Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48497 * 109.47010 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46840 * 239.99717 * 3 2 1 6 6 H 1.48500 * 109.46943 * 119.99901 * 3 2 1 7 7 C 1.38816 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99743 * 214.47958 * 7 2 1 9 9 N 1.36933 * 120.00080 * 34.47758 * 7 2 1 10 10 C 1.43466 * 118.93985 * 203.95409 * 9 7 2 11 11 C 1.53797 * 107.95882 * 273.60809 * 10 9 7 12 12 C 1.47134 * 111.84468 * 281.66965 * 11 10 9 13 13 N 1.48218 * 110.34450 * 58.29122 * 12 11 10 14 14 C 1.34780 * 119.96371 * 102.47123 * 13 12 11 15 15 O 1.21578 * 120.00360 * 357.36053 * 14 13 12 16 16 C 1.47625 * 119.99638 * 177.36416 * 14 13 12 17 17 C 1.39620 * 120.19180 * 111.27969 * 16 14 13 18 18 C 1.37859 * 119.92115 * 179.97438 * 17 16 14 19 19 C 1.38506 * 120.29959 * 359.97438 * 18 17 16 20 20 C 1.38105 * 120.38571 * 0.02562 * 19 18 17 21 21 C 1.38720 * 120.07263 * 359.79053 * 20 19 18 22 22 N 1.39814 * 120.15334 * 180.24949 * 21 20 19 23 23 C 1.36330 * 126.86312 * 2.04389 * 22 21 20 24 24 C 1.34959 * 106.77363 * 179.97438 * 23 22 21 25 25 N 1.33373 * 109.01937 * 359.97438 * 24 23 22 26 26 N 1.28771 * 109.92856 * 359.75077 * 25 24 23 27 27 C 1.43615 * 120.06310 * 282.49981 * 13 12 11 28 28 C 1.48860 * 118.93993 * 23.68017 * 9 7 2 29 29 H 0.97001 * 120.00152 * 185.82467 * 1 2 3 30 30 H 1.09001 * 109.76249 * 33.22688 * 10 9 7 31 31 H 1.08997 * 109.76600 * 153.94441 * 10 9 7 32 32 H 1.09006 * 109.00283 * 42.27620 * 11 10 9 33 33 H 1.08993 * 109.00958 * 161.05539 * 11 10 9 34 34 H 1.09000 * 109.32689 * 178.56036 * 12 11 10 35 35 H 1.09003 * 109.32188 * 298.20710 * 12 11 10 36 36 H 1.08008 * 120.04375 * 359.95862 * 17 16 14 37 37 H 1.07996 * 119.85215 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.80850 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.96583 * 180.02562 * 20 19 18 40 40 H 1.07995 * 126.60936 * 359.97438 * 23 22 21 41 41 H 1.08000 * 125.48628 * 179.97438 * 24 23 22 42 42 H 1.09005 * 108.87382 * 211.44301 * 27 13 12 43 43 H 1.09001 * 108.87418 * 329.97513 * 27 13 12 44 44 H 1.08993 * 109.48302 * 260.62863 * 28 9 7 45 45 H 1.08997 * 109.48017 * 20.66332 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.9480 -1.2846 0.5290 9 7 1.5060 -2.2836 -0.6723 10 6 1.9068 -3.6006 -0.2683 11 6 3.2147 -3.9439 -1.0009 12 6 2.9721 -4.3434 -2.3961 13 7 2.2745 -3.2600 -3.1284 14 6 2.9632 -2.4656 -3.9718 15 8 4.1644 -2.6068 -4.0954 16 6 2.2589 -1.4242 -4.7455 17 6 2.4751 -0.0738 -4.4643 18 6 1.8148 0.8942 -5.1906 19 6 0.9373 0.5336 -6.1997 20 6 0.7141 -0.7984 -6.4885 21 6 1.3729 -1.7853 -5.7700 22 7 1.1522 -3.1341 -6.0644 23 6 0.3535 -3.6364 -7.0485 24 6 0.4383 -4.9810 -6.9707 25 7 1.2615 -5.3076 -5.9734 26 7 1.7135 -4.2414 -5.4104 27 6 0.8655 -3.0554 -2.9398 28 6 0.5547 -2.0552 -1.7943 29 1 -0.4850 -0.8357 0.0853 30 1 2.0713 -3.6215 0.8090 31 1 1.1333 -4.3200 -0.5369 32 1 3.8673 -3.0708 -0.9900 33 1 3.7101 -4.7621 -0.4784 34 1 3.9250 -4.5520 -2.8825 35 1 2.3547 -5.2415 -2.4119 36 1 3.1586 0.2122 -3.6784 37 1 1.9832 1.9384 -4.9724 38 1 0.4245 1.2985 -6.7641 39 1 0.0287 -1.0719 -7.2770 40 1 -0.2338 -3.0678 -7.7543 41 1 -0.0773 -5.6800 -7.6126 42 1 0.4373 -2.6744 -3.8669 43 1 0.3989 -4.0118 -2.7034 44 1 -0.4657 -2.2062 -1.4423 45 1 0.6652 -1.0352 -2.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989800795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = 148.548415 kcal Electronic energy + Delta-G solvation = -31929.527195 eV Core-core repulsion = 27951.349144 eV Total energy + Delta-G solvation = -3978.178051 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.35547 -40.20133 -38.62493 -36.92626 -34.69077 -34.26954 -32.94897 -31.37891 -30.81788 -30.68339 -29.70828 -27.55755 -25.54560 -24.53256 -23.91235 -23.59691 -22.35116 -21.47996 -21.16672 -19.74767 -19.26357 -18.21780 -17.45850 -16.75226 -16.27079 -15.84932 -15.55615 -15.47165 -15.18247 -14.65169 -14.49043 -14.26074 -13.91830 -13.87179 -13.56011 -13.25305 -13.21375 -12.88066 -12.58525 -12.38659 -12.07957 -11.95238 -11.76381 -11.43557 -11.32072 -11.21954 -11.12016 -11.01863 -10.71216 -10.31001 -10.25774 -10.19988 -10.02107 -9.55308 -9.48597 -9.44005 -9.08466 -8.54483 -8.22983 -7.97558 -6.90198 -6.13333 -3.15861 0.36995 1.03718 1.77859 2.00097 2.45036 3.04999 3.39123 3.46808 3.49479 3.67511 3.68096 4.21027 4.30315 4.57275 4.60854 4.76528 4.84751 4.93418 5.04754 5.10293 5.17543 5.26462 5.36610 5.44960 5.54813 5.63134 5.69354 5.77593 5.88201 5.94057 6.00129 6.07444 6.11058 6.16786 6.25036 6.31516 6.43003 6.44039 6.54032 6.71622 6.75999 6.81480 6.93933 7.02334 7.24952 7.96025 8.05015 8.08775 8.55214 8.63306 9.14336 9.86192 10.26923 11.14572 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.005837 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.300842 B = 4795.801566 C = 6073.263797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.015 4.015 3 Si 1.041 2.959 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.293 1.293 7 C -0.357 4.357 8 H 0.055 0.945 9 N -0.591 5.591 10 C 0.164 3.836 11 C -0.168 4.168 12 C 0.139 3.861 13 N -0.552 5.552 14 C 0.578 3.422 15 O -0.546 6.546 16 C -0.098 4.098 17 C -0.049 4.049 18 C -0.111 4.111 19 C -0.085 4.085 20 C -0.132 4.132 21 C 0.153 3.847 22 N -0.320 5.320 23 C 0.017 3.983 24 C -0.075 4.075 25 N -0.237 5.237 26 N -0.035 5.035 27 C 0.098 3.902 28 C 0.142 3.858 29 H 0.267 0.733 30 H 0.047 0.953 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.143 0.857 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.194 0.806 41 H 0.188 0.812 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -3.170 -15.930 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.218 4.218 3 Si 0.871 3.129 4 H -0.211 1.211 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.486 4.486 8 H 0.073 0.927 9 N -0.313 5.313 10 C 0.036 3.964 11 C -0.209 4.209 12 C 0.017 3.983 13 N -0.281 5.281 14 C 0.364 3.636 15 O -0.425 6.425 16 C -0.103 4.103 17 C -0.068 4.068 18 C -0.130 4.130 19 C -0.104 4.104 20 C -0.153 4.153 21 C 0.060 3.940 22 N -0.102 5.102 23 C -0.132 4.132 24 C -0.229 4.229 25 N -0.107 5.107 26 N -0.012 5.012 27 C -0.028 4.028 28 C 0.016 3.984 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.161 0.839 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.153 0.847 40 H 0.211 0.789 41 H 0.205 0.795 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.431 -2.180 -14.916 15.143 hybrid contribution -0.668 -1.169 -0.694 1.514 sum -2.098 -3.349 -15.610 16.103 Atomic orbital electron populations 1.70810 1.06890 1.29909 1.46447 1.25551 0.96008 1.01057 0.99193 0.83870 0.75395 0.77060 0.76538 1.21149 1.22104 1.21950 1.19848 1.04015 0.91590 1.33152 0.92723 1.43679 1.53015 1.01549 1.33078 1.20286 0.92619 0.87004 0.96516 1.21845 1.01983 1.01343 0.95751 1.20494 0.97511 0.87940 0.92329 1.46906 1.08627 1.31500 1.41050 1.17668 0.86452 0.80202 0.79250 1.90735 1.13868 1.70574 1.67303 1.19793 0.97912 0.95699 0.96916 1.21252 0.97643 0.89868 0.98019 1.21290 0.96194 1.00316 0.95197 1.21093 0.97304 0.94885 0.97133 1.20732 1.01366 0.92141 1.01037 1.17440 0.98998 0.79102 0.98440 1.48073 1.32039 1.06440 1.23612 1.23512 0.98470 0.96005 0.95216 1.23214 1.04518 0.93770 1.01410 1.74394 1.08613 1.20984 1.06723 1.82506 1.17356 0.85555 1.15830 1.21891 0.81447 1.00379 0.99118 1.22096 0.92441 0.97447 0.86452 0.92266 0.93515 0.95185 0.91166 0.92546 0.90370 0.92079 0.83871 0.84353 0.84389 0.84725 0.78922 0.79498 0.92647 0.92210 0.95225 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 12.66 55.49 0.70 -25.24 16 2 C -0.01 -0.41 4.37 -17.43 -0.08 -0.48 16 3 Si 1.04 24.62 30.03 -169.99 -5.11 19.51 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.36 -9.75 9.05 -15.06 -0.14 -9.89 16 8 H 0.05 1.55 8.02 -52.48 -0.42 1.13 16 9 N -0.59 -14.33 2.41 -171.78 -0.41 -14.74 16 10 C 0.16 3.46 5.63 -5.23 -0.03 3.43 16 11 C -0.17 -3.26 5.64 -29.13 -0.16 -3.43 16 12 C 0.14 2.60 5.68 -5.91 -0.03 2.57 16 13 N -0.55 -10.92 1.24 -177.63 -0.22 -11.14 16 14 C 0.58 12.02 5.26 -12.43 -0.07 11.96 16 15 O -0.55 -12.90 16.56 5.30 0.09 -12.81 16 16 C -0.10 -1.74 4.55 -104.82 -0.48 -2.22 16 17 C -0.05 -0.81 9.78 -39.20 -0.38 -1.19 16 18 C -0.11 -1.40 10.02 -39.62 -0.40 -1.80 16 19 C -0.09 -0.87 10.03 -39.53 -0.40 -1.27 16 20 C -0.13 -1.42 9.47 -39.45 -0.37 -1.80 16 21 C 0.15 2.25 5.34 -83.31 -0.44 1.81 16 22 N -0.32 -4.62 3.17 -10.32 -0.03 -4.66 16 23 C 0.02 0.18 10.92 -16.72 -0.18 -0.01 16 24 C -0.07 -0.82 11.86 -18.05 -0.21 -1.03 16 25 N -0.24 -3.67 12.33 30.09 0.37 -3.30 16 26 N -0.03 -0.60 9.01 60.35 0.54 -0.05 16 27 C 0.10 1.88 4.12 -4.40 -0.02 1.86 16 28 C 0.14 3.21 5.20 -1.56 -0.01 3.20 16 29 H 0.27 7.80 7.04 -40.82 -0.29 7.51 16 30 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 31 H 0.03 0.59 7.59 -51.93 -0.39 0.20 16 32 H 0.07 1.59 7.91 -51.93 -0.41 1.18 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.52 7.15 -51.93 -0.37 1.15 16 35 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.14 2.57 8.06 -52.48 -0.42 2.14 16 37 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 39 H 0.13 0.94 6.85 -52.49 -0.36 0.58 16 40 H 0.19 1.01 7.18 -52.49 -0.38 0.63 16 41 H 0.19 1.28 8.06 -52.49 -0.42 0.86 16 42 H 0.06 1.01 4.74 -51.93 -0.25 0.77 16 43 H 0.06 1.11 7.72 -51.93 -0.40 0.71 16 44 H 0.03 0.70 7.41 -51.93 -0.38 0.32 16 45 H 0.07 1.69 6.96 -51.93 -0.36 1.33 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -34.70 360.65 -7.79 -42.49 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -5.76 Total: 2.77 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -3.40 Total: 1.72 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: 0.95 Total: -59.12 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.11 Total: 19.51 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.70 -7.79 -42.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989800795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.040 kcal (2) G-P(sol) polarization free energy of solvation -34.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds