Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48497 * 109.47010 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46840 * 239.99717 * 3 2 1 6 6 H 1.48500 * 109.46943 * 119.99901 * 3 2 1 7 7 C 1.38816 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99743 * 214.47958 * 7 2 1 9 9 N 1.36933 * 120.00080 * 34.47758 * 7 2 1 10 10 C 1.43466 * 118.93985 * 203.95409 * 9 7 2 11 11 C 1.53797 * 107.95882 * 273.60809 * 10 9 7 12 12 C 1.47134 * 111.84468 * 281.66965 * 11 10 9 13 13 N 1.48218 * 110.34450 * 58.29122 * 12 11 10 14 14 C 1.34780 * 119.96371 * 102.47123 * 13 12 11 15 15 O 1.21578 * 120.00360 * 357.36053 * 14 13 12 16 16 C 1.47625 * 119.99638 * 177.36416 * 14 13 12 17 17 C 1.39620 * 120.19180 * 111.27969 * 16 14 13 18 18 C 1.37859 * 119.92115 * 179.97438 * 17 16 14 19 19 C 1.38506 * 120.29959 * 359.97438 * 18 17 16 20 20 C 1.38105 * 120.38571 * 0.02562 * 19 18 17 21 21 C 1.38720 * 120.07263 * 359.79053 * 20 19 18 22 22 N 1.39814 * 120.15334 * 180.24949 * 21 20 19 23 23 C 1.36330 * 126.86312 * 2.04389 * 22 21 20 24 24 C 1.34959 * 106.77363 * 179.97438 * 23 22 21 25 25 N 1.33373 * 109.01937 * 359.97438 * 24 23 22 26 26 N 1.28771 * 109.92856 * 359.75077 * 25 24 23 27 27 C 1.43615 * 120.06310 * 282.49981 * 13 12 11 28 28 C 1.48860 * 118.93993 * 23.68017 * 9 7 2 29 29 H 0.97001 * 120.00152 * 185.82467 * 1 2 3 30 30 H 1.09001 * 109.76249 * 33.22688 * 10 9 7 31 31 H 1.08997 * 109.76600 * 153.94441 * 10 9 7 32 32 H 1.09006 * 109.00283 * 42.27620 * 11 10 9 33 33 H 1.08993 * 109.00958 * 161.05539 * 11 10 9 34 34 H 1.09000 * 109.32689 * 178.56036 * 12 11 10 35 35 H 1.09003 * 109.32188 * 298.20710 * 12 11 10 36 36 H 1.08008 * 120.04375 * 359.95862 * 17 16 14 37 37 H 1.07996 * 119.85215 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.80850 * 180.02562 * 19 18 17 39 39 H 1.07996 * 119.96583 * 180.02562 * 20 19 18 40 40 H 1.07995 * 126.60936 * 359.97438 * 23 22 21 41 41 H 1.08000 * 125.48628 * 179.97438 * 24 23 22 42 42 H 1.09005 * 108.87382 * 211.44301 * 27 13 12 43 43 H 1.09001 * 108.87418 * 329.97513 * 27 13 12 44 44 H 1.08993 * 109.48302 * 260.62863 * 28 9 7 45 45 H 1.08997 * 109.48017 * 20.66332 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1040 1.6963 -1.2125 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 2.9480 -1.2846 0.5290 9 7 1.5060 -2.2836 -0.6723 10 6 1.9068 -3.6006 -0.2683 11 6 3.2147 -3.9439 -1.0009 12 6 2.9721 -4.3434 -2.3961 13 7 2.2745 -3.2600 -3.1284 14 6 2.9632 -2.4656 -3.9718 15 8 4.1644 -2.6068 -4.0954 16 6 2.2589 -1.4242 -4.7455 17 6 2.4751 -0.0738 -4.4643 18 6 1.8148 0.8942 -5.1906 19 6 0.9373 0.5336 -6.1997 20 6 0.7141 -0.7984 -6.4885 21 6 1.3729 -1.7853 -5.7700 22 7 1.1522 -3.1341 -6.0644 23 6 0.3535 -3.6364 -7.0485 24 6 0.4383 -4.9810 -6.9707 25 7 1.2615 -5.3076 -5.9734 26 7 1.7135 -4.2414 -5.4104 27 6 0.8655 -3.0554 -2.9398 28 6 0.5547 -2.0552 -1.7943 29 1 -0.4850 -0.8357 0.0853 30 1 2.0713 -3.6215 0.8090 31 1 1.1333 -4.3200 -0.5369 32 1 3.8673 -3.0708 -0.9900 33 1 3.7101 -4.7621 -0.4784 34 1 3.9250 -4.5520 -2.8825 35 1 2.3547 -5.2415 -2.4119 36 1 3.1586 0.2122 -3.6784 37 1 1.9832 1.9384 -4.9724 38 1 0.4245 1.2985 -6.7641 39 1 0.0287 -1.0719 -7.2770 40 1 -0.2338 -3.0678 -7.7543 41 1 -0.0773 -5.6800 -7.6126 42 1 0.4373 -2.6744 -3.8669 43 1 0.3989 -4.0118 -2.7034 44 1 -0.4657 -2.2062 -1.4423 45 1 0.6652 -1.0352 -2.1626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989800795.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 126.895866 kcal Electronic energy + Delta-G solvation = -31930.466120 eV Core-core repulsion = 27951.349144 eV Total energy + Delta-G solvation = -3979.116976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.30786 -41.55743 -39.86962 -38.64993 -36.19962 -35.58186 -34.58188 -32.86897 -32.36811 -31.63455 -30.70417 -29.30945 -27.24694 -25.70175 -25.51507 -24.99712 -23.68847 -22.46663 -22.27870 -21.59884 -20.54192 -19.51281 -19.14574 -18.29141 -17.74577 -16.89987 -16.82558 -16.68478 -16.21969 -16.17967 -15.89877 -15.72394 -15.48044 -15.07723 -15.00334 -14.68809 -14.66537 -14.38116 -14.11823 -13.98345 -13.65374 -13.15688 -13.00124 -12.89624 -12.69892 -12.54941 -12.42789 -12.26369 -12.15680 -12.10958 -12.05638 -11.92692 -11.89396 -11.44001 -11.02159 -10.39563 -10.32752 -10.14751 -9.64391 -9.50801 -8.93923 -8.30578 -5.31335 -0.60167 0.02881 0.82593 1.09884 1.53020 1.53850 1.56418 1.61465 1.78327 2.03271 2.57815 2.62017 3.07829 3.25206 3.33003 3.50844 3.59924 3.81006 3.93079 3.99380 4.03632 4.09161 4.12555 4.22840 4.24685 4.29307 4.32605 4.37336 4.45626 4.56247 4.60379 4.70733 4.75922 4.88390 4.92871 5.04085 5.04631 5.08067 5.17819 5.24498 5.33587 5.35534 5.51253 5.62159 5.84628 5.87960 6.35172 6.43164 7.07187 7.09351 7.11801 7.80274 8.19321 8.93740 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.005837 C = 0.004609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.300842 B = 4795.801566 C = 6073.263797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.052 4.052 3 Si 1.084 2.916 4 H -0.281 1.281 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.365 4.365 8 H 0.034 0.966 9 N -0.603 5.603 10 C 0.162 3.838 11 C -0.152 4.152 12 C 0.139 3.861 13 N -0.552 5.552 14 C 0.574 3.426 15 O -0.593 6.593 16 C -0.138 4.138 17 C -0.081 4.081 18 C -0.113 4.113 19 C -0.065 4.065 20 C -0.114 4.114 21 C 0.142 3.858 22 N -0.331 5.331 23 C 0.040 3.960 24 C -0.079 4.079 25 N -0.268 5.268 26 N -0.100 5.100 27 C 0.119 3.881 28 C 0.154 3.846 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.029 0.971 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.159 0.841 38 H 0.190 0.810 39 H 0.188 0.812 40 H 0.251 0.749 41 H 0.226 0.774 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.019 0.981 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.333 -2.467 -19.366 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.252 4.252 3 Si 0.910 3.090 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.495 4.495 8 H 0.052 0.948 9 N -0.326 5.326 10 C 0.035 3.965 11 C -0.192 4.192 12 C 0.018 3.982 13 N -0.279 5.279 14 C 0.362 3.638 15 O -0.475 6.475 16 C -0.143 4.143 17 C -0.100 4.100 18 C -0.131 4.131 19 C -0.083 4.083 20 C -0.134 4.134 21 C 0.049 3.951 22 N -0.113 5.113 23 C -0.109 4.109 24 C -0.235 4.235 25 N -0.136 5.136 26 N -0.076 5.076 27 C -0.007 4.007 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.125 0.875 37 H 0.177 0.823 38 H 0.207 0.793 39 H 0.205 0.795 40 H 0.267 0.733 41 H 0.243 0.757 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.037 0.963 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.967 -1.518 -18.330 18.816 hybrid contribution 0.069 -1.426 0.267 1.452 sum -3.897 -2.943 -18.063 18.711 Atomic orbital electron populations 1.70920 1.07367 1.29019 1.48479 1.26619 0.96126 1.03607 0.98819 0.83288 0.74634 0.73970 0.77141 1.20639 1.21004 1.21130 1.19900 1.03103 0.93126 1.33343 0.94836 1.43836 1.53231 1.01966 1.33582 1.20397 0.93764 0.86181 0.96202 1.21653 1.00395 1.00663 0.96530 1.20500 0.97562 0.88709 0.91473 1.46949 1.08750 1.31404 1.40778 1.18269 0.86110 0.80407 0.78992 1.90671 1.15944 1.72063 1.68861 1.19653 1.00610 0.94966 0.99103 1.21146 0.99089 0.90784 0.99030 1.21609 0.95915 1.00390 0.95234 1.21701 0.95234 0.95992 0.95403 1.21382 1.00230 0.91222 1.00580 1.17716 0.98942 0.80228 0.98194 1.48212 1.32597 1.05987 1.24511 1.24517 0.96450 0.96107 0.93841 1.24000 1.03619 0.95216 1.00640 1.74351 1.09748 1.21275 1.08257 1.82509 1.20117 0.86618 1.18386 1.21608 0.81366 0.99566 0.98149 1.21931 0.91396 0.97034 0.86897 0.93661 0.94381 0.93159 0.95186 0.89476 0.91505 0.89892 0.87471 0.82290 0.79288 0.79473 0.73308 0.75735 0.91240 0.91316 0.96281 0.94163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.00 12.66 21.65 0.27 -53.73 16 2 C -0.05 -2.96 4.37 84.86 0.37 -2.59 16 3 Si 1.08 51.02 30.03 68.60 2.06 53.08 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 7 C -0.37 -20.83 9.05 84.04 0.76 -20.07 16 8 H 0.03 2.02 8.02 -2.91 -0.02 2.00 16 9 N -0.60 -30.44 2.41 -697.39 -1.68 -32.12 16 10 C 0.16 7.01 5.63 87.21 0.49 7.51 16 11 C -0.15 -6.11 5.64 29.04 0.16 -5.94 16 12 C 0.14 5.41 5.68 84.22 0.48 5.89 16 13 N -0.55 -22.69 1.24 -834.16 -1.03 -23.72 16 14 C 0.57 25.27 5.26 86.72 0.46 25.73 16 15 O -0.59 -30.27 16.56 -3.96 -0.07 -30.34 16 16 C -0.14 -5.05 4.55 -19.99 -0.09 -5.14 16 17 C -0.08 -2.80 9.78 22.51 0.22 -2.58 16 18 C -0.11 -2.65 10.02 22.24 0.22 -2.42 16 19 C -0.07 -1.01 10.03 22.30 0.22 -0.78 16 20 C -0.11 -1.87 9.47 22.35 0.21 -1.66 16 21 C 0.14 3.90 5.34 38.45 0.21 4.10 16 22 N -0.33 -8.83 3.17 -186.57 -0.59 -9.43 16 23 C 0.04 0.63 10.92 83.24 0.91 1.54 16 24 C -0.08 -1.47 11.86 83.70 0.99 -0.47 16 25 N -0.27 -8.02 12.33 -58.72 -0.72 -8.74 16 26 N -0.10 -3.41 9.01 37.02 0.33 -3.07 16 27 C 0.12 4.65 4.12 87.67 0.36 5.01 16 28 C 0.15 7.17 5.20 86.68 0.45 7.62 16 29 H 0.25 15.29 7.04 -92.71 -0.65 14.63 16 30 H 0.04 1.70 8.02 -2.39 -0.02 1.68 16 31 H 0.05 1.97 7.59 -2.39 -0.02 1.96 16 32 H 0.03 1.44 7.91 -2.38 -0.02 1.42 16 33 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 34 H 0.07 2.76 7.15 -2.39 -0.02 2.75 16 35 H 0.08 2.85 8.05 -2.39 -0.02 2.83 16 36 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 37 H 0.16 2.92 8.06 -2.91 -0.02 2.90 16 38 H 0.19 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.19 1.06 6.85 -2.91 -0.02 1.04 16 40 H 0.25 0.65 7.18 -2.91 -0.02 0.63 16 41 H 0.23 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.07 2.54 4.74 -2.38 -0.01 2.53 16 43 H 0.07 2.53 7.72 -2.39 -0.02 2.52 16 44 H 0.02 0.93 7.41 -2.39 -0.02 0.92 16 45 H 0.04 2.09 6.96 -2.39 -0.02 2.07 16 Total: -1.00 -84.90 360.65 6.14 -78.77 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.13 Total: 13.55 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 6.43 Total: 15.74 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -3.42 Total: -130.81 kcal Atomic # 8 Polarization: -30.27 SS G_CDS: -0.07 Total: -30.34 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.06 Total: 53.08 kcal Total: -84.90 6.14 -78.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989800795.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.663 kcal (2) G-P(sol) polarization free energy of solvation -84.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds