Wall clock time and date at job start Sat Apr 11 2020 06:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00396 * 2 1 4 4 H 1.48498 * 109.47431 * 239.99955 * 3 2 1 5 5 H 1.48497 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46752 * 120.00125 * 3 2 1 7 7 C 1.38813 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99694 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.49297 * 127.09751 * 0.02562 * 9 7 2 11 11 C 1.57757 * 106.66715 * 188.75205 * 10 9 7 12 12 C 1.52140 * 100.12553 * 23.21754 * 11 10 9 13 13 N 1.46496 * 111.09332 * 74.40725 * 12 11 10 14 14 C 1.34774 * 120.00000 * 78.35729 * 13 12 11 15 15 O 1.21571 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.47691 * 119.99806 * 179.97438 * 14 13 12 17 17 C 1.39981 * 120.38583 * 0.02576 * 16 14 13 18 18 N 1.31380 * 121.15917 * 179.97438 * 17 16 14 19 19 C 1.32546 * 121.79491 * 359.68969 * 18 17 16 20 20 N 1.37579 * 133.56383 * 179.64189 * 19 18 17 21 21 H 0.97001 * 126.23952 * 0.74370 * 20 19 18 22 22 C 1.36174 * 107.52691 * 180.47221 * 20 19 18 23 23 N 1.30064 * 110.10759 * 0.22912 * 22 20 19 24 24 C 1.35768 * 109.43667 * 359.97438 * 23 22 20 25 25 C 1.39490 * 133.74938 * 180.02562 * 24 23 22 26 26 C 1.51228 * 122.09737 * 208.58472 * 12 11 10 27 27 C 1.55690 * 104.60698 * 141.91988 * 26 12 11 28 28 C 1.56280 * 105.93852 * 352.75489 * 27 26 12 29 29 C 1.42699 * 127.10823 * 180.02562 * 9 7 2 30 30 H 1.09004 * 107.77509 * 256.38640 * 29 9 7 31 31 H 0.97003 * 119.99191 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.05346 * 307.89803 * 10 9 7 33 33 H 1.08998 * 110.04877 * 69.38084 * 10 9 7 34 34 H 1.09005 * 111.09338 * 265.71941 * 11 10 9 35 35 H 1.09001 * 111.84027 * 141.02297 * 11 10 9 36 36 H 0.97004 * 119.99793 * 258.36096 * 13 12 11 37 37 H 1.08000 * 119.41517 * 359.97438 * 17 16 14 38 38 H 1.07994 * 124.94615 * 180.26544 * 22 20 19 39 39 H 1.08005 * 120.97383 * 359.97323 * 25 24 23 40 40 H 1.08998 * 110.40770 * 260.70653 * 26 12 11 41 41 H 1.09004 * 110.41022 * 23.02621 * 26 12 11 42 42 H 1.09001 * 110.15600 * 111.86999 * 27 26 12 43 43 H 1.08999 * 110.16175 * 233.63196 * 27 26 12 44 44 H 1.09000 * 110.97099 * 93.85539 * 28 27 26 45 45 H 1.08999 * 110.96942 * 217.58516 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6961 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1561 -2.5726 -0.0028 11 6 -0.4207 -4.1108 0.2262 12 6 0.8795 -4.5070 0.9097 13 7 0.9136 -4.0308 2.2946 14 6 0.2350 -4.6936 3.2520 15 8 -0.4050 -5.6870 2.9664 16 6 0.2698 -4.2138 4.6484 17 6 1.0045 -3.0712 4.9864 18 7 1.0456 -2.6307 6.2234 19 6 0.3929 -3.2393 7.2035 20 7 0.2720 -3.0012 8.5531 21 1 0.6798 -2.2716 9.0455 22 6 -0.5294 -3.9728 9.0707 23 7 -0.9031 -4.7915 8.1317 24 6 -0.3656 -4.3978 6.9488 25 6 -0.4319 -4.8935 5.6466 26 6 1.4521 -5.9024 0.8003 27 6 2.9908 -5.6885 0.6977 28 6 3.2018 -4.1456 0.5665 29 6 1.8806 -3.7027 -0.0018 30 1 1.7857 -4.1038 -1.0108 31 1 -0.4849 0.8401 0.0004 32 1 -0.6053 -1.9950 0.8051 33 1 -0.5707 -2.2605 -0.9613 34 1 -0.5415 -4.6336 -0.7226 35 1 -1.2764 -4.2822 0.8793 36 1 1.4245 -3.2383 2.5226 37 1 1.5471 -2.5426 4.2166 38 1 -0.8138 -4.0517 10.1096 39 1 -1.0075 -5.7781 5.4173 40 1 1.2075 -6.4844 1.6888 41 1 1.0752 -6.3989 -0.0940 42 1 3.4824 -6.0598 1.5970 43 1 3.3830 -6.1975 -0.1827 44 1 3.3787 -3.6918 1.5416 45 1 4.0179 -3.9205 -0.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990892476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:31 Heat of formation + Delta-G solvation = 98.071319 kcal Electronic energy + Delta-G solvation = -30345.301044 eV Core-core repulsion = 26364.934143 eV Total energy + Delta-G solvation = -3980.366902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.53491 -40.56239 -38.84860 -37.48805 -34.41304 -33.82556 -33.18684 -31.82721 -31.34364 -30.24153 -29.40829 -26.92673 -25.86852 -24.46054 -24.03903 -23.89473 -21.98545 -20.96684 -20.47882 -19.64989 -18.99122 -18.69500 -17.91969 -16.93515 -16.49527 -16.09035 -15.89767 -15.59628 -14.89237 -14.58379 -14.47488 -14.25216 -14.00775 -13.94189 -13.60412 -13.35624 -13.09597 -12.66633 -12.60932 -12.34371 -11.87193 -11.45059 -11.41963 -11.29475 -11.26100 -11.03048 -10.92183 -10.78953 -10.53280 -10.33568 -10.05350 -9.96179 -9.81166 -9.70262 -9.36335 -9.13845 -9.03527 -8.78251 -8.70400 -8.47244 -6.90451 -5.78127 -3.13285 0.61357 0.74712 2.29810 2.52856 3.07490 3.36378 3.40266 3.41900 3.42890 3.88362 3.94510 4.19249 4.42651 4.53265 4.64022 4.77102 4.86525 4.91695 5.19448 5.24534 5.32899 5.45857 5.55784 5.59636 5.74253 5.80393 5.91912 5.92921 5.95557 6.01794 6.16773 6.24460 6.30058 6.32570 6.38618 6.45922 6.50182 6.63663 6.80100 6.81336 6.90259 7.15885 7.40801 7.49131 7.56994 7.65528 7.74392 7.98739 8.15962 8.59416 9.09686 9.76162 10.44979 11.33677 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003978 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.219869 B = 7036.190800 C = 8654.875589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.002 4.002 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.234 4.234 8 H 0.079 0.921 9 N -0.586 5.586 10 C 0.178 3.822 11 C -0.141 4.141 12 C 0.133 3.867 13 N -0.682 5.682 14 C 0.567 3.433 15 O -0.543 6.543 16 C -0.191 4.191 17 C 0.181 3.819 18 N -0.485 5.485 19 C 0.254 3.746 20 N -0.589 5.589 21 H 0.430 0.570 22 C 0.271 3.729 23 N -0.481 5.481 24 C -0.011 4.011 25 C 0.044 3.956 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.114 4.114 29 C 0.158 3.842 30 H 0.025 0.975 31 H 0.254 0.746 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.404 0.596 37 H 0.174 0.826 38 H 0.226 0.774 39 H 0.155 0.845 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.187 -8.507 14.159 16.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.362 4.362 8 H 0.097 0.903 9 N -0.309 5.309 10 C 0.054 3.946 11 C -0.180 4.180 12 C 0.045 3.955 13 N -0.333 5.333 14 C 0.352 3.648 15 O -0.422 6.422 16 C -0.199 4.199 17 C 0.012 3.988 18 N -0.197 5.197 19 C 0.018 3.982 20 N -0.204 5.204 21 H 0.269 0.731 22 C -0.017 4.017 23 N -0.200 5.200 24 C -0.131 4.131 25 C 0.017 3.983 26 C -0.154 4.154 27 C -0.155 4.155 28 C -0.153 4.153 29 C 0.048 3.952 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.241 0.759 37 H 0.191 0.809 38 H 0.242 0.758 39 H 0.173 0.827 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.606 -8.944 14.225 16.880 hybrid contribution 0.859 1.843 0.156 2.039 sum 2.465 -7.102 14.381 16.227 Atomic orbital electron populations 1.69904 1.04895 1.25327 1.56236 1.24783 0.95593 0.97607 1.01906 0.86260 0.78524 0.83390 0.77927 1.21200 1.21685 1.21097 1.18964 0.90265 0.82198 1.44761 0.90284 1.43680 1.01716 0.99276 1.86236 1.22287 0.83133 0.88328 1.00821 1.23065 0.96121 0.99646 0.99169 1.21573 0.98482 0.94327 0.81099 1.45638 1.50019 1.30176 1.07436 1.17703 0.79615 0.83544 0.83916 1.90733 1.42792 1.26097 1.82553 1.20829 1.04128 0.99528 0.95421 1.22901 0.93284 0.91427 0.91188 1.66438 1.21623 1.32205 0.99441 1.19186 0.98081 0.94760 0.86181 1.42855 1.43921 1.27716 1.05930 0.73067 1.25487 0.91090 0.84874 1.00281 1.70476 1.24488 1.27153 0.97854 1.19553 1.02407 0.96930 0.94178 1.20832 0.92591 0.97405 0.87514 1.21913 0.94659 0.96116 1.02717 1.22818 0.95884 0.95864 1.00942 1.21828 0.97785 0.94594 1.01072 1.20863 0.91658 0.87335 0.95351 0.95817 0.93591 0.91631 0.94602 0.91509 0.91500 0.75907 0.80942 0.75811 0.82734 0.90485 0.91151 0.92304 0.91999 0.91623 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.59 10.55 55.49 0.59 -25.00 16 2 C 0.00 -0.05 5.49 -17.43 -0.10 -0.14 16 3 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.23 -5.96 10.28 -15.06 -0.15 -6.12 16 8 H 0.08 1.95 7.83 -52.48 -0.41 1.54 16 9 N -0.59 -13.57 3.04 -161.72 -0.49 -14.06 16 10 C 0.18 4.11 5.37 0.11 0.00 4.11 16 11 C -0.14 -2.71 6.41 -24.57 -0.16 -2.86 16 12 C 0.13 2.34 0.42 -130.72 -0.06 2.29 16 13 N -0.68 -11.57 4.26 -47.56 -0.20 -11.77 16 14 C 0.57 9.56 7.17 -12.40 -0.09 9.47 16 15 O -0.54 -10.30 14.52 5.30 0.08 -10.22 16 16 C -0.19 -2.88 5.89 -104.85 -0.62 -3.50 16 17 C 0.18 2.62 10.69 -17.09 -0.18 2.43 16 18 N -0.48 -7.04 10.36 -11.96 -0.12 -7.17 16 19 C 0.25 3.37 8.45 -155.63 -1.31 2.05 16 20 N -0.59 -5.09 6.20 -13.22 -0.08 -5.18 16 21 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 22 C 0.27 2.11 12.97 -89.69 -1.16 0.95 16 23 N -0.48 -5.93 11.29 -12.02 -0.14 -6.06 16 24 C -0.01 -0.16 7.23 -84.69 -0.61 -0.77 16 25 C 0.04 0.65 9.75 -38.58 -0.38 0.27 16 26 C -0.12 -1.79 5.97 -26.19 -0.16 -1.95 16 27 C -0.12 -1.62 6.94 -23.54 -0.16 -1.78 16 28 C -0.11 -1.83 6.45 -26.22 -0.17 -2.00 16 29 C 0.16 3.03 2.61 -68.74 -0.18 2.85 16 30 H 0.02 0.49 7.99 -51.93 -0.42 0.08 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.07 1.69 7.05 -51.93 -0.37 1.32 16 33 H 0.04 0.91 7.98 -51.93 -0.41 0.50 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.07 1.31 7.78 -51.93 -0.40 0.91 16 36 H 0.40 6.85 5.99 -40.82 -0.24 6.61 16 37 H 0.17 2.33 6.39 -52.49 -0.34 2.00 16 38 H 0.23 0.47 8.06 -52.49 -0.42 0.05 16 39 H 0.16 2.20 7.72 -52.48 -0.41 1.79 16 40 H 0.08 1.27 6.20 -51.93 -0.32 0.95 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.05 7.51 -51.93 -0.39 0.66 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 361.68 15.07 5.45 5.45 Total: -1.00 -32.67 361.68 -11.18 -43.85 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -5.74 Total: 8.79 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -5.49 Total: 5.30 kcal Atomic # 7 Polarization: -68.79 SS G_CDS: -0.45 Total: -69.24 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.08 Total: -10.22 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.67 -11.18 -43.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990892476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.922 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds