Wall clock time and date at job start Sat Apr 11 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00396 * 2 1 4 4 H 1.48498 * 109.47431 * 239.99955 * 3 2 1 5 5 H 1.48497 * 109.47285 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46752 * 120.00125 * 3 2 1 7 7 C 1.38813 * 119.99491 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99694 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.49297 * 127.09751 * 0.02562 * 9 7 2 11 11 C 1.57757 * 106.66715 * 188.75205 * 10 9 7 12 12 C 1.52140 * 100.12553 * 23.21754 * 11 10 9 13 13 N 1.46496 * 111.09332 * 74.40725 * 12 11 10 14 14 C 1.34774 * 120.00000 * 78.35729 * 13 12 11 15 15 O 1.21571 * 120.00233 * 0.02562 * 14 13 12 16 16 C 1.47691 * 119.99806 * 179.97438 * 14 13 12 17 17 C 1.39981 * 120.38583 * 0.02576 * 16 14 13 18 18 N 1.31380 * 121.15917 * 179.97438 * 17 16 14 19 19 C 1.32546 * 121.79491 * 359.68969 * 18 17 16 20 20 N 1.37579 * 133.56383 * 179.64189 * 19 18 17 21 21 H 0.97001 * 126.23952 * 0.74370 * 20 19 18 22 22 C 1.36174 * 107.52691 * 180.47221 * 20 19 18 23 23 N 1.30064 * 110.10759 * 0.22912 * 22 20 19 24 24 C 1.35768 * 109.43667 * 359.97438 * 23 22 20 25 25 C 1.39490 * 133.74938 * 180.02562 * 24 23 22 26 26 C 1.51228 * 122.09737 * 208.58472 * 12 11 10 27 27 C 1.55690 * 104.60698 * 141.91988 * 26 12 11 28 28 C 1.56280 * 105.93852 * 352.75489 * 27 26 12 29 29 C 1.42699 * 127.10823 * 180.02562 * 9 7 2 30 30 H 1.09004 * 107.77509 * 256.38640 * 29 9 7 31 31 H 0.97003 * 119.99191 * 359.97438 * 1 2 3 32 32 H 1.09000 * 110.05346 * 307.89803 * 10 9 7 33 33 H 1.08998 * 110.04877 * 69.38084 * 10 9 7 34 34 H 1.09005 * 111.09338 * 265.71941 * 11 10 9 35 35 H 1.09001 * 111.84027 * 141.02297 * 11 10 9 36 36 H 0.97004 * 119.99793 * 258.36096 * 13 12 11 37 37 H 1.08000 * 119.41517 * 359.97438 * 17 16 14 38 38 H 1.07994 * 124.94615 * 180.26544 * 22 20 19 39 39 H 1.08005 * 120.97383 * 359.97323 * 25 24 23 40 40 H 1.08998 * 110.40770 * 260.70653 * 26 12 11 41 41 H 1.09004 * 110.41022 * 23.02621 * 26 12 11 42 42 H 1.09001 * 110.15600 * 111.86999 * 27 26 12 43 43 H 1.08999 * 110.16175 * 233.63196 * 27 26 12 44 44 H 1.09000 * 110.97099 * 93.85539 * 28 27 26 45 45 H 1.08999 * 110.96942 * 217.58516 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6961 1.2126 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1561 -2.5726 -0.0028 11 6 -0.4207 -4.1108 0.2262 12 6 0.8795 -4.5070 0.9097 13 7 0.9136 -4.0308 2.2946 14 6 0.2350 -4.6936 3.2520 15 8 -0.4050 -5.6870 2.9664 16 6 0.2698 -4.2138 4.6484 17 6 1.0045 -3.0712 4.9864 18 7 1.0456 -2.6307 6.2234 19 6 0.3929 -3.2393 7.2035 20 7 0.2720 -3.0012 8.5531 21 1 0.6798 -2.2716 9.0455 22 6 -0.5294 -3.9728 9.0707 23 7 -0.9031 -4.7915 8.1317 24 6 -0.3656 -4.3978 6.9488 25 6 -0.4319 -4.8935 5.6466 26 6 1.4521 -5.9024 0.8003 27 6 2.9908 -5.6885 0.6977 28 6 3.2018 -4.1456 0.5665 29 6 1.8806 -3.7027 -0.0018 30 1 1.7857 -4.1038 -1.0108 31 1 -0.4849 0.8401 0.0004 32 1 -0.6053 -1.9950 0.8051 33 1 -0.5707 -2.2605 -0.9613 34 1 -0.5415 -4.6336 -0.7226 35 1 -1.2764 -4.2822 0.8793 36 1 1.4245 -3.2383 2.5226 37 1 1.5471 -2.5426 4.2166 38 1 -0.8138 -4.0517 10.1096 39 1 -1.0075 -5.7781 5.4173 40 1 1.2075 -6.4844 1.6888 41 1 1.0752 -6.3989 -0.0940 42 1 3.4824 -6.0598 1.5970 43 1 3.3830 -6.1975 -0.1827 44 1 3.3787 -3.6918 1.5416 45 1 4.0179 -3.9205 -0.1201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990892476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:30 Heat of formation + Delta-G solvation = 77.662203 kcal Electronic energy + Delta-G solvation = -30346.186050 eV Core-core repulsion = 26364.934143 eV Total energy + Delta-G solvation = -3981.251908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.44117 -41.98408 -40.08257 -38.73073 -36.10005 -34.77438 -34.55209 -33.56536 -32.46924 -31.65334 -30.63773 -28.49349 -27.32322 -25.96112 -25.45742 -24.94051 -22.90655 -22.31126 -21.92696 -21.21230 -20.27085 -19.70050 -19.09833 -18.29968 -18.01179 -17.33563 -17.00452 -16.84047 -16.32827 -16.19803 -15.70955 -15.64978 -15.46751 -15.05292 -14.98036 -14.54644 -14.24790 -14.12937 -14.00733 -13.70707 -13.45529 -13.01498 -12.92773 -12.81403 -12.60153 -12.29871 -12.22726 -12.18667 -12.08409 -12.01469 -11.76160 -11.52168 -11.34498 -11.14407 -10.78079 -10.65092 -10.35880 -10.12970 -9.86905 -9.71947 -8.83527 -7.80053 -5.15555 -0.43555 -0.29802 1.50208 1.51118 1.52314 1.58322 1.68375 1.86835 2.13530 2.53621 2.72927 3.03107 3.14375 3.32073 3.40441 3.59391 3.66198 3.72073 3.80096 3.92837 4.13384 4.14577 4.24172 4.31765 4.43928 4.46549 4.62959 4.66108 4.67506 4.82546 4.86305 4.90998 4.97638 5.01627 5.10900 5.16736 5.27348 5.29760 5.32039 5.53574 5.59801 5.64357 5.70553 5.81466 6.11588 6.21623 6.56225 6.62189 6.68821 7.08487 7.23203 7.81068 8.53075 9.31195 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003978 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.219869 B = 7036.190800 C = 8654.875589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.058 4.058 3 Si 0.969 3.031 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.274 1.274 7 C -0.231 4.231 8 H 0.089 0.911 9 N -0.597 5.597 10 C 0.190 3.810 11 C -0.130 4.130 12 C 0.139 3.861 13 N -0.682 5.682 14 C 0.570 3.430 15 O -0.566 6.566 16 C -0.198 4.198 17 C 0.173 3.827 18 N -0.494 5.494 19 C 0.240 3.760 20 N -0.575 5.575 21 H 0.447 0.553 22 C 0.308 3.692 23 N -0.523 5.523 24 C -0.021 4.021 25 C 0.034 3.966 26 C -0.111 4.111 27 C -0.104 4.104 28 C -0.110 4.110 29 C 0.148 3.852 30 H 0.021 0.979 31 H 0.244 0.756 32 H 0.032 0.968 33 H 0.002 0.998 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.403 0.597 37 H 0.176 0.824 38 H 0.286 0.714 39 H 0.151 0.849 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 -9.348 16.465 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.252 4.252 3 Si 0.799 3.201 4 H -0.207 1.207 5 H -0.229 1.229 6 H -0.200 1.200 7 C -0.360 4.360 8 H 0.107 0.893 9 N -0.321 5.321 10 C 0.065 3.935 11 C -0.169 4.169 12 C 0.052 3.948 13 N -0.332 5.332 14 C 0.357 3.643 15 O -0.447 6.447 16 C -0.206 4.206 17 C 0.004 3.996 18 N -0.206 5.206 19 C 0.002 3.998 20 N -0.191 5.191 21 H 0.291 0.709 22 C 0.020 3.980 23 N -0.243 5.243 24 C -0.140 4.140 25 C 0.006 3.994 26 C -0.150 4.150 27 C -0.142 4.142 28 C -0.148 4.148 29 C 0.039 3.961 30 H 0.038 0.962 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.020 0.980 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.240 0.760 37 H 0.192 0.808 38 H 0.301 0.699 39 H 0.169 0.831 40 H 0.088 0.912 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.294 -9.794 16.553 19.514 hybrid contribution 0.294 2.084 -0.409 2.144 sum 3.587 -7.710 16.144 18.247 Atomic orbital electron populations 1.70122 1.06302 1.25116 1.58250 1.25503 0.96248 1.00595 1.02807 0.85289 0.77141 0.79495 0.78225 1.20745 1.22949 1.19961 1.19345 0.90883 0.83042 1.42697 0.89294 1.43780 1.01833 1.00382 1.86062 1.21962 0.83331 0.90548 0.97650 1.22925 0.97017 0.96820 1.00116 1.21550 0.96646 0.95579 0.81073 1.45623 1.50125 1.30164 1.07265 1.17899 0.78840 0.83003 0.84515 1.90709 1.43758 1.27145 1.83086 1.20604 1.05351 1.00248 0.94413 1.22871 0.93721 0.91444 0.91590 1.66444 1.22052 1.32440 0.99677 1.19466 0.97907 0.94701 0.87718 1.42968 1.43612 1.28377 1.04138 0.70915 1.26758 0.87509 0.82140 1.01573 1.70511 1.26560 1.29350 0.97911 1.19699 1.02540 0.97206 0.94583 1.20846 0.92807 0.97489 0.88208 1.21909 0.95915 0.94217 1.02929 1.22754 0.94451 0.94141 1.02808 1.21842 0.96000 0.96095 1.00897 1.21062 0.94158 0.85272 0.95611 0.96204 0.94658 0.94973 0.97999 0.89968 0.92191 0.75976 0.80760 0.69869 0.83140 0.91188 0.90044 0.90751 0.89792 0.91690 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.21 10.55 21.65 0.23 -54.98 16 2 C -0.06 -3.14 5.49 84.86 0.47 -2.67 16 3 Si 0.97 43.97 29.55 68.60 2.03 46.00 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.23 -11.88 10.28 84.03 0.86 -11.02 16 8 H 0.09 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.60 -28.19 3.04 -665.55 -2.02 -30.22 16 10 C 0.19 9.18 5.37 87.52 0.47 9.65 16 11 C -0.13 -5.09 6.41 32.00 0.21 -4.89 16 12 C 0.14 4.88 0.42 4.32 0.00 4.88 16 13 N -0.68 -23.44 4.26 -422.67 -1.80 -25.24 16 14 C 0.57 19.68 7.17 86.74 0.62 20.31 16 15 O -0.57 -21.86 14.52 -3.94 -0.06 -21.92 16 16 C -0.20 -6.14 5.89 -20.01 -0.12 -6.26 16 17 C 0.17 5.09 10.69 85.18 0.91 6.00 16 18 N -0.49 -14.17 10.36 -191.76 -1.99 -16.16 16 19 C 0.24 6.06 8.45 133.91 1.13 7.19 16 20 N -0.57 -8.17 6.20 -195.73 -1.21 -9.38 16 21 H 0.45 3.13 8.96 -92.71 -0.83 2.30 16 22 C 0.31 3.59 12.97 180.02 2.33 5.93 16 23 N -0.52 -11.86 11.29 -191.94 -2.17 -14.02 16 24 C -0.02 -0.58 7.23 39.46 0.29 -0.29 16 25 C 0.03 1.03 9.75 22.92 0.22 1.25 16 26 C -0.11 -3.27 5.97 30.94 0.18 -3.08 16 27 C -0.10 -2.57 6.94 32.66 0.23 -2.35 16 28 C -0.11 -3.31 6.45 30.92 0.20 -3.11 16 29 C 0.15 5.59 2.61 46.46 0.12 5.71 16 30 H 0.02 0.80 7.99 -2.39 -0.02 0.78 16 31 H 0.24 14.11 8.31 -92.71 -0.77 13.33 16 32 H 0.03 1.75 7.05 -2.39 -0.02 1.74 16 33 H 0.00 0.10 7.98 -2.39 -0.02 0.08 16 34 H 0.08 2.95 8.14 -2.38 -0.02 2.93 16 35 H 0.06 2.43 7.78 -2.39 -0.02 2.41 16 36 H 0.40 13.98 5.99 -92.71 -0.55 13.43 16 37 H 0.18 4.89 6.39 -2.91 -0.02 4.87 16 38 H 0.29 -0.56 8.06 -2.91 -0.02 -0.58 16 39 H 0.15 4.47 7.72 -2.91 -0.02 4.45 16 40 H 0.07 2.21 6.20 -2.39 -0.01 2.19 16 41 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 42 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.06 1.97 7.51 -2.39 -0.02 1.95 16 45 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -74.04 361.68 0.81 -73.24 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: -0.33 Total: 25.46 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 8.13 Total: 27.23 kcal Atomic # 7 Polarization: -141.04 SS G_CDS: -8.97 Total: -150.01 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.06 Total: -21.92 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -74.04 0.81 -73.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990892476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.899 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds