Wall clock time and date at job start Sat Apr 11 2020 06:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48500 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00131 * 3 2 1 6 6 H 1.48502 * 109.47189 * 60.00382 * 3 2 1 7 7 C 1.38815 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00427 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.47374 * 125.58339 * 359.97438 * 9 7 2 11 11 C 1.54859 * 104.82163 * 155.30202 * 10 9 7 12 12 C 1.54911 * 101.76710 * 37.07717 * 11 10 9 13 13 N 1.46506 * 112.33392 * 86.21502 * 12 11 10 14 14 C 1.34776 * 119.99832 * 61.00870 * 13 12 11 15 15 O 1.21626 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.47206 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.37748 * 119.94136 * 180.02562 * 16 14 13 18 18 C 1.39865 * 119.93347 * 179.97438 * 17 16 14 19 19 C 1.36302 * 119.81760 * 0.02562 * 18 17 16 20 20 C 1.40774 * 119.70866 * 0.02562 * 19 18 17 21 21 N 1.32820 * 132.73959 * 179.97438 * 20 19 18 22 22 C 1.32373 * 109.74457 * 180.02562 * 21 20 19 23 23 N 1.31402 * 109.61380 * 359.97438 * 22 21 20 24 24 N 1.36553 * 119.87993 * 359.97438 * 20 19 18 25 25 C 1.53587 * 109.09301 * 211.32779 * 12 11 10 26 26 C 1.55464 * 106.05830 * 112.99616 * 25 12 11 27 27 C 1.54757 * 104.36323 * 335.36044 * 26 25 12 28 28 C 1.46978 * 125.58037 * 179.97438 * 9 7 2 29 29 H 1.09006 * 111.81332 * 59.07288 * 28 9 7 30 30 H 0.96996 * 120.00004 * 359.97438 * 1 2 3 31 31 H 1.09006 * 110.36647 * 36.46511 * 10 9 7 32 32 H 1.09000 * 110.36567 * 274.14133 * 10 9 7 33 33 H 1.09002 * 110.97123 * 278.95280 * 11 10 9 34 34 H 1.09006 * 110.96835 * 155.19244 * 11 10 9 35 35 H 0.97001 * 119.99838 * 241.01435 * 13 12 11 36 36 H 1.07996 * 120.03406 * 359.97438 * 17 16 14 37 37 H 1.07999 * 120.09081 * 179.72781 * 18 17 16 38 38 H 1.07995 * 120.14515 * 179.97438 * 19 18 17 39 39 H 1.08000 * 125.19566 * 179.97438 * 22 21 20 40 40 H 1.08999 * 110.01727 * 232.97159 * 25 12 11 41 41 H 1.09002 * 110.01443 * 354.35903 * 25 12 11 42 42 H 1.08996 * 110.50412 * 216.57080 * 26 25 12 43 43 H 1.09001 * 110.39395 * 94.09296 * 26 25 12 44 44 H 1.08991 * 110.67318 * 279.24836 * 27 26 25 45 45 H 1.09000 * 110.67126 * 156.10915 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 0.0005 11 6 -0.4037 -3.9233 -0.6254 12 6 0.7719 -4.7539 -0.0530 13 7 0.4659 -5.3175 1.2643 14 6 -0.5627 -6.1765 1.4073 15 8 -1.2366 -6.4842 0.4427 16 6 -0.8705 -6.7423 2.7310 17 6 -1.9218 -7.6206 2.8757 18 6 -2.2137 -8.1585 4.1333 19 6 -1.4562 -7.8106 5.2117 20 6 -0.3852 -6.9112 5.0511 21 7 0.5010 -6.4039 5.9004 22 6 1.3214 -5.5886 5.2567 23 7 0.9931 -5.5460 3.9851 24 7 -0.1110 -6.3933 3.8177 25 6 1.1657 -5.8349 -1.0705 26 6 2.5883 -5.4570 -1.5706 27 6 2.6830 -3.9296 -1.3403 28 6 1.9331 -3.7264 -0.0016 29 1 2.5748 -3.8806 0.8659 30 1 -0.4850 0.8400 0.0004 31 1 -0.5992 -1.7501 -0.6061 32 1 -0.5252 -2.4953 1.0200 33 1 -0.3554 -3.8772 -1.7134 34 1 -1.3620 -4.3249 -0.2957 35 1 1.0036 -5.0723 2.0335 36 1 -2.5199 -7.8935 2.0189 37 1 -3.0401 -8.8439 4.2505 38 1 -1.6772 -8.2224 6.1853 39 1 2.1363 -5.0419 5.7077 40 1 1.1695 -6.8142 -0.5918 41 1 0.4676 -5.8311 -1.9077 42 1 2.6952 -5.6905 -2.6299 43 1 3.3470 -5.9786 -0.9872 44 1 2.1869 -3.3876 -2.1453 45 1 3.7236 -3.6179 -1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000991659365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:57 Heat of formation + Delta-G solvation = 126.863803 kcal Electronic energy + Delta-G solvation = -30654.669893 eV Core-core repulsion = 26675.551527 eV Total energy + Delta-G solvation = -3979.118366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.94088 -40.30118 -38.64830 -37.44317 -34.40226 -34.11017 -33.13596 -31.40252 -31.21001 -30.28577 -29.67897 -26.71963 -26.37798 -24.81172 -23.84013 -23.71730 -22.89172 -21.27913 -20.01665 -19.83834 -18.87677 -18.14778 -17.61763 -17.06217 -16.80890 -16.52167 -16.07361 -15.62451 -14.98298 -14.70299 -14.69607 -14.35430 -14.01373 -13.52400 -13.25760 -13.21934 -12.97117 -12.85209 -12.39611 -12.23510 -11.92761 -11.80936 -11.71527 -11.46756 -11.18622 -11.00332 -10.84703 -10.71723 -10.56503 -10.44155 -10.23729 -10.07847 -9.96777 -9.86362 -9.83453 -9.66151 -9.49986 -8.71775 -8.65100 -8.50343 -6.84890 -5.63989 -3.07042 -0.04214 0.64662 1.71421 2.22664 2.83703 3.05991 3.27708 3.39429 3.44925 3.47417 3.66454 3.87868 4.44255 4.46994 4.50334 4.57124 4.86232 4.92722 5.06975 5.12499 5.31014 5.40924 5.52163 5.60366 5.64650 5.77207 5.82780 5.83958 5.93604 5.97025 6.05301 6.09381 6.13926 6.24620 6.32635 6.36013 6.39210 6.50812 6.58153 6.74480 6.77562 6.94335 7.08953 7.53929 7.62221 7.65542 7.75449 7.87467 8.26694 8.36662 9.21972 9.82951 10.47208 11.38860 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.003816 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.690036 B = 7335.794718 C = 8272.858301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.011 4.011 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.595 5.595 10 C 0.153 3.847 11 C -0.143 4.143 12 C 0.155 3.845 13 N -0.682 5.682 14 C 0.555 3.445 15 O -0.522 6.522 16 C 0.097 3.903 17 C -0.087 4.087 18 C -0.069 4.069 19 C -0.086 4.086 20 C 0.276 3.724 21 N -0.542 5.542 22 C 0.248 3.752 23 N -0.342 5.342 24 N -0.275 5.275 25 C -0.111 4.111 26 C -0.124 4.124 27 C -0.128 4.128 28 C 0.163 3.837 29 H 0.047 0.953 30 H 0.251 0.749 31 H 0.109 0.891 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.415 0.585 36 H 0.175 0.825 37 H 0.159 0.841 38 H 0.162 0.838 39 H 0.230 0.770 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -18.310 7.077 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.347 4.347 8 H 0.096 0.904 9 N -0.319 5.319 10 C 0.028 3.972 11 C -0.182 4.182 12 C 0.069 3.931 13 N -0.336 5.336 14 C 0.339 3.661 15 O -0.399 6.399 16 C -0.014 4.014 17 C -0.110 4.110 18 C -0.095 4.095 19 C -0.107 4.107 20 C 0.023 3.977 21 N -0.272 5.272 22 C -0.052 4.052 23 N -0.174 5.174 24 N -0.052 5.052 25 C -0.150 4.150 26 C -0.162 4.162 27 C -0.168 4.168 28 C 0.055 3.945 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.192 0.808 37 H 0.177 0.823 38 H 0.179 0.821 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.356 -17.757 6.287 18.983 hybrid contribution 0.606 0.960 0.601 1.284 sum -1.750 -16.797 6.887 18.238 Atomic orbital electron populations 1.69807 1.04893 1.24562 1.57657 1.24774 0.95666 0.97659 1.02494 0.86021 0.78657 0.83750 0.77204 1.20532 1.21782 1.21868 1.19089 0.90489 0.82256 1.42833 0.90414 1.44522 1.01747 0.99172 1.86436 1.21973 0.84471 0.92926 0.97831 1.23359 0.96602 0.98055 1.00178 1.21803 0.97386 0.92657 0.81229 1.46275 1.31111 1.43268 1.12911 1.17463 0.81984 0.80484 0.86203 1.90834 1.50040 1.60921 1.38064 1.20829 0.93995 1.00007 0.86599 1.21503 0.94887 0.94631 1.00006 1.21272 0.99015 0.98260 0.90913 1.20513 0.92230 0.96318 1.01639 1.21861 0.97244 0.96890 0.81728 1.70848 1.08173 1.17317 1.30872 1.26214 0.97733 0.94086 0.87120 1.78126 1.02508 1.16277 1.20455 1.47932 1.20629 1.28632 1.08002 1.22504 0.96974 0.97318 0.98204 1.22568 0.96132 0.97345 1.00191 1.22918 1.00465 0.93880 0.99519 1.21775 0.91511 0.85781 0.95415 0.93545 0.93835 0.87296 0.97541 0.91070 0.91400 0.74248 0.80785 0.82301 0.82092 0.75356 0.92332 0.90904 0.92093 0.92377 0.90554 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.93 10.07 55.49 0.56 -26.38 16 2 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.22 -5.97 10.01 -15.06 -0.15 -6.13 16 8 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 9 N -0.59 -14.99 3.03 -161.12 -0.49 -15.47 16 10 C 0.15 3.83 5.91 -2.58 -0.02 3.82 16 11 C -0.14 -2.98 5.71 -24.74 -0.14 -3.12 16 12 C 0.16 2.93 0.74 -129.37 -0.10 2.84 16 13 N -0.68 -12.22 5.22 -46.48 -0.24 -12.47 16 14 C 0.56 9.24 6.97 -12.62 -0.09 9.15 16 15 O -0.52 -9.27 14.09 5.25 0.07 -9.19 16 16 C 0.10 1.33 6.80 -82.05 -0.56 0.77 16 17 C -0.09 -0.83 9.58 -39.15 -0.38 -1.21 16 18 C -0.07 -0.46 10.04 -39.67 -0.40 -0.85 16 19 C -0.09 -0.71 10.09 -39.32 -0.40 -1.10 16 20 C 0.28 3.46 7.88 -156.37 -1.23 2.23 16 21 N -0.54 -7.23 11.24 -13.99 -0.16 -7.39 16 22 C 0.25 3.18 12.98 -91.99 -1.19 1.99 16 23 N -0.34 -5.20 9.99 29.25 0.29 -4.91 16 24 N -0.27 -3.92 3.93 -8.82 -0.03 -3.95 16 25 C -0.11 -1.84 5.41 -25.12 -0.14 -1.97 16 26 C -0.12 -1.89 6.87 -24.50 -0.17 -2.06 16 27 C -0.13 -2.35 6.22 -24.87 -0.15 -2.50 16 28 C 0.16 3.40 3.67 -65.60 -0.24 3.16 16 29 H 0.05 0.99 7.96 -51.93 -0.41 0.57 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.11 3.06 5.82 -51.93 -0.30 2.76 16 32 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 1.45 7.63 -51.93 -0.40 1.06 16 34 H 0.07 1.42 6.53 -51.93 -0.34 1.08 16 35 H 0.42 7.54 5.42 -40.82 -0.22 7.32 16 36 H 0.17 1.41 7.59 -52.49 -0.40 1.02 16 37 H 0.16 0.39 8.06 -52.49 -0.42 -0.03 16 38 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.23 1.98 8.06 -52.49 -0.42 1.56 16 40 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 41 H 0.07 1.20 7.37 -51.93 -0.38 0.82 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.53 8.09 -51.93 -0.42 1.11 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 359.66 15.07 5.42 5.42 Total: -1.00 -33.53 359.66 -10.81 -44.34 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -5.77 Total: 8.33 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -5.44 Total: 4.62 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -0.07 Total: -70.57 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.19 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.53 -10.81 -44.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991659365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.206 kcal (2) G-P(sol) polarization free energy of solvation -33.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds