Wall clock time and date at job start Sat Apr 11 2020 06:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86794 * 120.00283 * 2 1 4 4 H 1.48500 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47305 * 300.00131 * 3 2 1 6 6 H 1.48502 * 109.47189 * 60.00382 * 3 2 1 7 7 C 1.38815 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00427 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99882 * 359.97438 * 7 2 1 10 10 C 1.47374 * 125.58339 * 359.97438 * 9 7 2 11 11 C 1.54859 * 104.82163 * 155.30202 * 10 9 7 12 12 C 1.54911 * 101.76710 * 37.07717 * 11 10 9 13 13 N 1.46506 * 112.33392 * 86.21502 * 12 11 10 14 14 C 1.34776 * 119.99832 * 61.00870 * 13 12 11 15 15 O 1.21626 * 119.99995 * 0.02562 * 14 13 12 16 16 C 1.47206 * 119.99846 * 180.02562 * 14 13 12 17 17 C 1.37748 * 119.94136 * 180.02562 * 16 14 13 18 18 C 1.39865 * 119.93347 * 179.97438 * 17 16 14 19 19 C 1.36302 * 119.81760 * 0.02562 * 18 17 16 20 20 C 1.40774 * 119.70866 * 0.02562 * 19 18 17 21 21 N 1.32820 * 132.73959 * 179.97438 * 20 19 18 22 22 C 1.32373 * 109.74457 * 180.02562 * 21 20 19 23 23 N 1.31402 * 109.61380 * 359.97438 * 22 21 20 24 24 N 1.36553 * 119.87993 * 359.97438 * 20 19 18 25 25 C 1.53587 * 109.09301 * 211.32779 * 12 11 10 26 26 C 1.55464 * 106.05830 * 112.99616 * 25 12 11 27 27 C 1.54757 * 104.36323 * 335.36044 * 26 25 12 28 28 C 1.46978 * 125.58037 * 179.97438 * 9 7 2 29 29 H 1.09006 * 111.81332 * 59.07288 * 28 9 7 30 30 H 0.96996 * 120.00004 * 359.97438 * 1 2 3 31 31 H 1.09006 * 110.36647 * 36.46511 * 10 9 7 32 32 H 1.09000 * 110.36567 * 274.14133 * 10 9 7 33 33 H 1.09002 * 110.97123 * 278.95280 * 11 10 9 34 34 H 1.09006 * 110.96835 * 155.19244 * 11 10 9 35 35 H 0.97001 * 119.99838 * 241.01435 * 13 12 11 36 36 H 1.07996 * 120.03406 * 359.97438 * 17 16 14 37 37 H 1.07999 * 120.09081 * 179.72781 * 18 17 16 38 38 H 1.07995 * 120.14515 * 179.97438 * 19 18 17 39 39 H 1.08000 * 125.19566 * 179.97438 * 22 21 20 40 40 H 1.08999 * 110.01727 * 232.97159 * 25 12 11 41 41 H 1.09002 * 110.01443 * 354.35903 * 25 12 11 42 42 H 1.08996 * 110.50412 * 216.57080 * 26 25 12 43 43 H 1.09001 * 110.39395 * 94.09296 * 26 25 12 44 44 H 1.08991 * 110.67318 * 279.24836 * 27 26 25 45 45 H 1.09000 * 110.67126 * 156.10915 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1412 -2.5314 0.0005 11 6 -0.4037 -3.9233 -0.6254 12 6 0.7719 -4.7539 -0.0530 13 7 0.4659 -5.3175 1.2643 14 6 -0.5627 -6.1765 1.4073 15 8 -1.2366 -6.4842 0.4427 16 6 -0.8705 -6.7423 2.7310 17 6 -1.9218 -7.6206 2.8757 18 6 -2.2137 -8.1585 4.1333 19 6 -1.4562 -7.8106 5.2117 20 6 -0.3852 -6.9112 5.0511 21 7 0.5010 -6.4039 5.9004 22 6 1.3214 -5.5886 5.2567 23 7 0.9931 -5.5460 3.9851 24 7 -0.1110 -6.3933 3.8177 25 6 1.1657 -5.8349 -1.0705 26 6 2.5883 -5.4570 -1.5706 27 6 2.6830 -3.9296 -1.3403 28 6 1.9331 -3.7264 -0.0016 29 1 2.5748 -3.8806 0.8659 30 1 -0.4850 0.8400 0.0004 31 1 -0.5992 -1.7501 -0.6061 32 1 -0.5252 -2.4953 1.0200 33 1 -0.3554 -3.8772 -1.7134 34 1 -1.3620 -4.3249 -0.2957 35 1 1.0036 -5.0723 2.0335 36 1 -2.5199 -7.8935 2.0189 37 1 -3.0401 -8.8439 4.2505 38 1 -1.6772 -8.2224 6.1853 39 1 2.1363 -5.0419 5.7077 40 1 1.1695 -6.8142 -0.5918 41 1 0.4676 -5.8311 -1.9077 42 1 2.6952 -5.6905 -2.6299 43 1 3.3470 -5.9786 -0.9872 44 1 2.1869 -3.3876 -2.1453 45 1 3.7236 -3.6179 -1.2495 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000991659365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:56 Heat of formation + Delta-G solvation = 106.542023 kcal Electronic energy + Delta-G solvation = -30655.551111 eV Core-core repulsion = 26675.551527 eV Total energy + Delta-G solvation = -3979.999585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.84484 -41.71118 -39.95275 -38.45054 -36.10396 -35.30409 -34.32623 -33.32329 -32.08896 -31.62413 -30.99310 -28.46619 -27.84936 -25.87816 -25.71669 -24.58453 -23.89128 -22.69191 -21.69498 -21.20764 -20.34273 -19.21436 -18.90059 -18.62122 -17.86162 -17.49109 -17.17681 -16.90502 -16.70864 -16.17145 -15.96261 -15.66899 -15.22421 -15.13202 -14.84800 -14.56198 -14.01070 -13.95630 -13.64686 -13.60945 -13.32855 -13.16168 -12.98183 -12.88460 -12.77079 -12.70485 -12.39680 -12.31334 -12.02933 -11.96469 -11.77313 -11.70199 -11.56339 -11.39237 -11.31601 -11.02974 -10.77764 -10.74563 -10.10833 -9.45147 -8.91837 -7.77574 -5.23063 -0.87832 -0.15514 0.83709 1.26852 1.45001 1.45740 1.56130 1.79226 1.88817 2.35326 2.47609 2.81781 2.98473 3.30343 3.32759 3.55045 3.57163 3.78011 3.88168 3.89473 3.91076 4.05213 4.29579 4.32253 4.36779 4.40833 4.49748 4.58381 4.74332 4.77463 4.80859 4.89122 4.94088 5.02872 5.05863 5.09193 5.16452 5.21276 5.25286 5.26587 5.40746 5.45696 5.47728 5.58295 5.59471 5.76546 6.25935 6.37146 6.75354 6.95229 7.07765 7.75418 8.40040 9.24361 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012668 B = 0.003816 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.690036 B = 7335.794718 C = 8272.858301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.069 4.069 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.297 1.297 7 C -0.226 4.226 8 H 0.085 0.915 9 N -0.610 5.610 10 C 0.164 3.836 11 C -0.129 4.129 12 C 0.162 3.838 13 N -0.693 5.693 14 C 0.554 3.446 15 O -0.541 6.541 16 C 0.046 3.954 17 C -0.056 4.056 18 C -0.048 4.048 19 C -0.076 4.076 20 C 0.257 3.743 21 N -0.560 5.560 22 C 0.243 3.757 23 N -0.387 5.387 24 N -0.284 5.284 25 C -0.104 4.104 26 C -0.109 4.109 27 C -0.121 4.121 28 C 0.154 3.846 29 H 0.042 0.958 30 H 0.245 0.755 31 H 0.077 0.923 32 H -0.031 1.031 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.413 0.587 36 H 0.192 0.808 37 H 0.216 0.784 38 H 0.197 0.803 39 H 0.256 0.744 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -21.244 7.631 22.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.808 3.192 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.224 1.224 7 C -0.355 4.355 8 H 0.102 0.898 9 N -0.334 5.334 10 C 0.039 3.961 11 C -0.168 4.168 12 C 0.076 3.924 13 N -0.347 5.347 14 C 0.340 3.660 15 O -0.420 6.420 16 C -0.064 4.064 17 C -0.079 4.079 18 C -0.073 4.073 19 C -0.097 4.097 20 C 0.005 3.995 21 N -0.291 5.291 22 C -0.056 4.056 23 N -0.220 5.220 24 N -0.061 5.061 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.161 4.161 28 C 0.047 3.953 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.095 0.905 32 H -0.013 1.013 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.255 0.745 36 H 0.209 0.791 37 H 0.233 0.767 38 H 0.214 0.786 39 H 0.272 0.728 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.473 -20.739 6.841 21.978 hybrid contribution 0.533 1.772 0.534 1.926 sum -1.940 -18.968 7.374 20.443 Atomic orbital electron populations 1.70064 1.06377 1.24742 1.59064 1.25611 0.96496 1.00959 1.02990 0.84987 0.78247 0.79447 0.76537 1.18807 1.21861 1.22397 1.19461 0.91013 0.83301 1.41714 0.89755 1.44721 1.01853 1.00495 1.86344 1.21618 0.84697 0.94511 0.95297 1.23164 0.97626 0.95867 1.00130 1.21679 0.95203 0.92966 0.82589 1.46336 1.32089 1.44010 1.12287 1.17867 0.80986 0.79678 0.87505 1.90797 1.50383 1.61631 1.39144 1.20726 0.96876 1.03453 0.85360 1.22030 0.92244 0.91536 1.02079 1.21862 0.99373 0.97504 0.88539 1.21152 0.90257 0.94376 1.03873 1.22654 0.98240 0.97591 0.81014 1.70836 1.08851 1.18008 1.31375 1.26776 0.98210 0.94000 0.86656 1.78000 1.04096 1.18088 1.21810 1.47869 1.20650 1.28919 1.08630 1.22452 0.97881 0.96571 0.97364 1.22512 0.95576 0.94518 1.02128 1.22762 1.00020 0.96373 0.96965 1.22009 0.92472 0.84248 0.96591 0.94057 0.94543 0.90540 1.01299 0.90549 0.91648 0.74521 0.79104 0.76725 0.78581 0.72789 0.91584 0.90735 0.89506 0.90587 0.92468 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.43 10.07 21.65 0.22 -58.21 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 46.49 29.55 68.60 2.03 48.51 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 7 C -0.23 -12.72 10.01 84.03 0.84 -11.88 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.50 16 9 N -0.61 -32.02 3.03 -663.68 -2.01 -34.03 16 10 C 0.16 8.75 5.91 86.85 0.51 9.27 16 11 C -0.13 -5.58 5.71 31.88 0.18 -5.40 16 12 C 0.16 6.22 0.74 5.19 0.00 6.23 16 13 N -0.69 -25.62 5.22 -419.20 -2.19 -27.80 16 14 C 0.55 18.62 6.97 86.60 0.60 19.22 16 15 O -0.54 -19.11 14.09 -4.11 -0.06 -19.17 16 16 C 0.05 1.24 6.80 40.56 0.28 1.52 16 17 C -0.06 -0.90 9.58 22.55 0.22 -0.69 16 18 C -0.05 -0.39 10.04 22.21 0.22 -0.17 16 19 C -0.08 -0.96 10.09 22.44 0.23 -0.73 16 20 C 0.26 6.14 7.88 134.16 1.06 7.20 16 21 N -0.56 -14.73 11.24 -198.16 -2.23 -16.96 16 22 C 0.24 6.40 12.98 180.83 2.35 8.74 16 23 N -0.39 -12.26 9.99 -61.37 -0.61 -12.88 16 24 N -0.28 -8.11 3.93 -181.80 -0.71 -8.82 16 25 C -0.10 -3.30 5.41 31.64 0.17 -3.13 16 26 C -0.11 -3.08 6.87 32.04 0.22 -2.86 16 27 C -0.12 -4.39 6.22 31.80 0.20 -4.19 16 28 C 0.15 6.53 3.67 46.24 0.17 6.70 16 29 H 0.04 1.81 7.96 -2.38 -0.02 1.79 16 30 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.08 4.59 5.82 -2.38 -0.01 4.58 16 32 H -0.03 -1.84 8.14 -2.39 -0.02 -1.86 16 33 H 0.08 3.20 7.63 -2.39 -0.02 3.18 16 34 H 0.06 2.85 6.53 -2.38 -0.02 2.83 16 35 H 0.41 15.74 5.42 -92.71 -0.50 15.23 16 36 H 0.19 2.44 7.59 -2.91 -0.02 2.41 16 37 H 0.22 -0.54 8.06 -2.91 -0.02 -0.56 16 38 H 0.20 1.09 8.06 -2.91 -0.02 1.06 16 39 H 0.26 4.57 8.06 -2.91 -0.02 4.55 16 40 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 41 H 0.07 2.35 7.37 -2.39 -0.02 2.33 16 42 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 2.29 8.09 -2.39 -0.02 2.27 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -78.90 359.66 2.68 -76.21 By element: Atomic # 1 Polarization: 26.26 SS G_CDS: 0.53 Total: 26.79 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 7.71 Total: 26.34 kcal Atomic # 7 Polarization: -151.16 SS G_CDS: -7.53 Total: -158.69 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.06 Total: -19.17 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.90 2.68 -76.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000991659365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.755 kcal (2) G-P(sol) polarization free energy of solvation -78.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds