Wall clock time and date at job start Sat Apr 11 2020 06:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99913 * 2 1 4 4 H 1.48505 * 109.47140 * 240.00311 * 3 2 1 5 5 H 1.48499 * 109.47260 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47411 * 120.00120 * 3 2 1 7 7 C 1.38809 * 120.00053 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00136 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00086 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00108 * 180.02562 * 9 7 2 11 11 C 1.53037 * 109.45801 * 155.00130 * 10 9 7 12 12 C 1.53194 * 109.30947 * 181.38553 * 11 10 9 13 13 N 1.46931 * 108.77695 * 305.36619 * 12 11 10 14 14 C 1.34779 * 120.63040 * 233.58925 * 13 12 11 15 15 O 1.21611 * 120.00036 * 6.38841 * 14 13 12 16 16 C 1.47412 * 120.00045 * 186.39155 * 14 13 12 17 17 C 1.41331 * 126.40853 * 29.15174 * 16 14 13 18 18 N 1.30477 * 108.06464 * 180.26538 * 17 16 14 19 19 N 1.39936 * 108.91577 * 0.02562 * 18 17 16 20 20 C 1.40171 * 125.77041 * 180.02562 * 19 18 17 21 21 C 1.39260 * 120.48476 * 0.02562 * 20 19 18 22 22 C 1.38508 * 118.36524 * 180.02562 * 21 20 19 23 23 C 1.38280 * 119.23013 * 359.97438 * 22 21 20 24 24 N 1.31861 * 120.90895 * 0.02562 * 23 22 21 25 25 C 1.31819 * 121.79796 * 359.65872 * 24 23 22 26 26 C 1.34533 * 108.45825 * 359.97438 * 19 18 17 27 27 C 1.46923 * 118.73870 * 53.85646 * 13 12 11 28 28 C 1.53042 * 109.45846 * 275.06998 * 10 9 7 29 29 H 0.97007 * 120.00126 * 359.97438 * 1 2 3 30 30 H 0.97002 * 120.00012 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.45854 * 35.02446 * 10 9 7 32 32 H 1.08996 * 109.49870 * 61.43623 * 11 10 9 33 33 H 1.08996 * 109.52341 * 301.35265 * 11 10 9 34 34 H 1.09001 * 109.58838 * 185.57767 * 12 11 10 35 35 H 1.08996 * 109.70328 * 65.22218 * 12 11 10 36 36 H 1.08003 * 125.96751 * 0.22867 * 17 16 14 37 37 H 1.07999 * 120.82317 * 359.97438 * 21 20 19 38 38 H 1.07999 * 120.38878 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.54726 * 180.02562 * 23 22 21 40 40 H 1.08001 * 119.67350 * 180.33234 * 25 24 23 41 41 H 1.08002 * 126.31474 * 179.97438 * 26 19 18 42 42 H 1.09006 * 109.58248 * 65.92992 * 27 13 12 43 43 H 1.08998 * 109.58761 * 186.35494 * 27 13 12 44 44 H 1.08999 * 109.49894 * 298.56622 * 28 10 9 45 45 H 1.09003 * 109.49996 * 58.66384 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.1804 -4.7521 0.6093 12 6 1.9620 -6.0694 0.6393 13 7 2.4415 -6.3658 -0.7175 14 6 2.1736 -7.5531 -1.2964 15 8 1.4335 -8.3451 -0.7452 16 6 2.7777 -7.8916 -2.5978 17 6 4.0189 -7.4304 -3.0918 18 7 4.1998 -7.9463 -4.2765 19 7 3.0994 -8.7503 -4.5940 20 6 2.9284 -9.4729 -5.7829 21 6 3.9002 -9.4334 -6.7796 22 6 3.6860 -10.1638 -7.9368 23 6 2.5240 -10.9027 -8.0636 24 7 1.6232 -10.9189 -7.1008 25 6 1.7907 -10.2432 -5.9814 26 6 2.2338 -8.7134 -3.5648 27 6 3.2238 -5.3457 -1.4289 28 6 2.4234 -4.0345 -1.4379 29 1 -0.4851 0.8401 0.0004 30 1 0.3555 -2.3881 -0.0005 31 1 2.9685 -3.5504 0.5893 32 1 0.2814 -4.8762 0.0055 33 1 0.9008 -4.4717 1.6247 34 1 1.3099 -6.8735 0.9802 35 1 2.8120 -5.9769 1.3152 36 1 4.6987 -6.7664 -2.5785 37 1 4.7984 -8.8471 -6.6537 38 1 4.4183 -10.1570 -8.7306 39 1 2.3519 -11.4744 -8.9635 40 1 1.0329 -10.2853 -5.2130 41 1 1.2875 -9.2306 -3.5060 42 1 4.1749 -5.1930 -0.9186 43 1 3.4045 -5.6722 -2.4530 44 1 1.5127 -4.1653 -2.0224 45 1 3.0290 -3.2430 -1.8794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996666111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:42 Heat of formation + Delta-G solvation = 88.332820 kcal Electronic energy + Delta-G solvation = -28480.047670 eV Core-core repulsion = 24499.258475 eV Total energy + Delta-G solvation = -3980.789195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.99200 -41.23955 -40.58970 -38.60932 -36.17160 -35.32122 -33.80700 -33.39860 -32.34661 -31.49494 -30.98819 -30.33600 -26.82823 -25.63006 -25.20083 -24.55080 -24.01602 -22.77145 -22.18598 -21.44939 -20.38705 -19.38657 -18.97413 -18.11393 -17.65828 -17.24820 -16.79732 -16.72212 -16.65085 -16.15306 -16.01575 -15.45369 -15.34912 -15.05593 -15.00756 -14.81737 -14.66044 -14.33300 -14.26311 -14.02412 -13.66612 -13.26781 -13.22020 -13.02547 -12.78350 -12.60410 -12.37203 -12.22308 -12.19834 -11.99617 -11.84263 -11.63324 -11.27688 -11.03542 -10.86345 -10.78135 -10.70918 -10.38563 -9.67755 -9.37710 -8.97721 -7.91081 -5.19639 -0.55170 0.05841 0.70955 0.99546 1.06103 1.49254 1.51881 1.57713 1.92638 2.26239 2.58721 2.67809 3.13590 3.29768 3.42165 3.53124 3.62111 3.71879 3.82718 3.86686 3.91038 3.97464 4.11683 4.19635 4.22377 4.29247 4.38454 4.42135 4.49060 4.56113 4.66584 4.79921 4.86781 4.88635 4.90316 4.99862 5.05960 5.10377 5.20050 5.35566 5.37980 5.52294 5.56921 5.65818 5.78399 6.26191 6.30404 6.42435 6.76652 7.14121 7.36305 8.13065 8.35464 9.32491 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016127 B = 0.002199 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.811076 B =12727.380885 C =13606.844187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.973 5.973 2 C -0.081 4.081 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.301 1.301 6 H -0.277 1.277 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.739 5.739 10 C 0.172 3.828 11 C -0.128 4.128 12 C 0.125 3.875 13 N -0.599 5.599 14 C 0.595 3.405 15 O -0.585 6.585 16 C -0.289 4.289 17 C 0.097 3.903 18 N -0.306 5.306 19 N -0.311 5.311 20 C 0.082 3.918 21 C -0.080 4.080 22 C -0.136 4.136 23 C 0.088 3.912 24 N -0.482 5.482 25 C 0.082 3.918 26 C 0.123 3.877 27 C 0.105 3.895 28 C -0.140 4.140 29 H 0.249 0.751 30 H 0.369 0.631 31 H 0.055 0.945 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.153 0.847 38 H 0.181 0.819 39 H 0.195 0.805 40 H 0.173 0.827 41 H 0.209 0.791 42 H 0.100 0.900 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.226 -23.418 -14.273 29.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.624 5.624 2 C -0.273 4.273 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.228 1.228 6 H -0.203 1.203 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.378 5.378 10 C 0.064 3.936 11 C -0.167 4.167 12 C 0.002 3.998 13 N -0.331 5.331 14 C 0.385 3.615 15 O -0.466 6.466 16 C -0.303 4.303 17 C -0.091 4.091 18 N -0.124 5.124 19 N -0.084 5.084 20 C -0.012 4.012 21 C -0.107 4.107 22 C -0.156 4.156 23 C -0.069 4.069 24 N -0.190 5.190 25 C -0.077 4.077 26 C -0.024 4.024 27 C -0.017 4.017 28 C -0.181 4.181 29 H 0.057 0.943 30 H 0.200 0.800 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.244 0.756 37 H 0.171 0.829 38 H 0.198 0.802 39 H 0.212 0.788 40 H 0.190 0.810 41 H 0.226 0.774 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.057 0.943 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.014 -24.295 -15.153 30.679 hybrid contribution -0.300 1.984 1.023 2.252 sum 10.714 -22.311 -14.130 28.500 Atomic orbital electron populations 1.69824 1.06727 1.25910 1.59980 1.25568 0.96305 1.01160 1.04254 0.85239 0.77129 0.79321 0.78249 1.20320 1.22775 1.20285 1.19617 0.91557 0.85022 1.40291 0.90081 1.42688 1.05374 1.01145 1.88609 1.20449 0.94477 0.84559 0.94084 1.22059 0.98512 0.94711 1.01437 1.21565 0.99310 0.96283 0.82614 1.47969 1.53872 1.14401 1.16824 1.17422 0.79442 0.81010 0.83638 1.90742 1.39295 1.50787 1.65813 1.20227 1.00378 1.11079 0.98632 1.24854 0.95846 0.96941 0.91459 1.77231 1.06872 1.10738 1.17519 1.45590 1.15028 1.35243 1.12492 1.18945 0.98971 0.97458 0.85866 1.21645 0.98511 0.98428 0.92136 1.22519 0.99592 0.95584 0.97871 1.23532 0.89274 0.96198 0.97871 1.67834 1.31400 1.18815 1.00943 1.22814 0.94979 0.93208 0.96742 1.23311 0.96632 0.96290 0.86153 1.22385 0.94568 0.86234 0.98533 1.22526 0.99587 0.96675 0.99294 0.94270 0.79981 0.92677 0.93552 0.90817 0.89636 0.89019 0.75581 0.82949 0.80175 0.78838 0.81007 0.77413 0.88224 0.87826 0.94335 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 2 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 3 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 4 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.23 -12.48 9.93 84.03 0.83 -11.64 16 8 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 9 N -0.74 -36.20 5.12 -322.81 -1.65 -37.85 16 10 C 0.17 6.30 2.73 45.02 0.12 6.42 16 11 C -0.13 -4.11 5.55 30.67 0.17 -3.94 16 12 C 0.12 3.28 6.44 86.36 0.56 3.83 16 13 N -0.60 -15.27 2.97 -821.94 -2.44 -17.71 16 14 C 0.60 16.39 7.62 86.66 0.66 17.05 16 15 O -0.58 -19.82 16.44 -4.07 -0.07 -19.88 16 16 C -0.29 -6.54 5.55 -20.14 -0.11 -6.66 16 17 C 0.10 1.83 9.58 85.65 0.82 2.65 16 18 N -0.31 -6.37 11.85 -56.23 -0.67 -7.03 16 19 N -0.31 -6.18 3.77 -185.90 -0.70 -6.88 16 20 C 0.08 1.39 6.70 38.19 0.26 1.65 16 21 C -0.08 -1.08 9.77 22.58 0.22 -0.86 16 22 C -0.14 -1.12 10.11 22.34 0.23 -0.89 16 23 C 0.09 0.87 11.18 84.70 0.95 1.82 16 24 N -0.48 -7.59 10.35 -195.33 -2.02 -9.61 16 25 C 0.08 1.30 10.62 84.83 0.90 2.20 16 26 C 0.12 2.49 10.73 84.24 0.90 3.39 16 27 C 0.11 2.34 5.23 86.51 0.45 2.80 16 28 C -0.14 -4.44 5.67 30.82 0.17 -4.26 16 29 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 30 H 0.37 19.96 7.80 -92.71 -0.72 19.24 16 31 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.09 2.37 7.00 -2.39 -0.02 2.35 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.23 2.89 6.45 -2.91 -0.02 2.87 16 37 H 0.15 1.98 7.77 -2.91 -0.02 1.96 16 38 H 0.18 0.20 8.06 -2.91 -0.02 0.18 16 39 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.17 2.14 6.74 -2.91 -0.02 2.12 16 41 H 0.21 3.22 7.04 -2.91 -0.02 3.20 16 42 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.10 1.99 4.16 -2.39 -0.01 1.98 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.36 373.47 2.68 -72.68 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.31 Total: 28.73 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 7.60 Total: 9.43 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -7.20 Total: -138.41 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.07 Total: -19.88 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.36 2.68 -72.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996666111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.015 kcal (2) G-P(sol) polarization free energy of solvation -75.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds