Wall clock time and date at job start Sat Apr 11 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48499 * 109.46930 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47008 * 119.99888 * 3 2 1 7 7 C 1.38807 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99965 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45960 * 204.99657 * 10 9 7 12 12 C 1.53191 * 109.31176 * 178.62940 * 11 10 9 13 13 N 1.46927 * 108.77581 * 54.63829 * 12 11 10 14 14 C 1.34777 * 120.63215 * 126.36457 * 13 12 11 15 15 O 1.21552 * 119.99748 * 3.79454 * 14 13 12 16 16 C 1.47858 * 120.00083 * 183.78431 * 14 13 12 17 17 C 1.39623 * 120.11133 * 309.43030 * 16 14 13 18 18 C 1.37980 * 119.98153 * 179.97438 * 17 16 14 19 19 C 1.38259 * 120.22123 * 0.02562 * 18 17 16 20 20 C 1.38921 * 120.22574 * 359.97438 * 19 18 17 21 21 N 1.40225 * 119.99432 * 179.97438 * 20 19 18 22 22 C 1.34722 * 126.84082 * 5.00020 * 21 20 19 23 23 N 1.30853 * 108.02843 * 180.02562 * 22 21 20 24 24 C 1.33256 * 109.84524 * 0.02562 * 23 22 21 25 25 N 1.30750 * 109.00166 * 0.23361 * 24 23 22 26 26 C 1.38593 * 120.01166 * 0.25846 * 20 19 18 27 27 C 1.46926 * 118.73770 * 306.64113 * 13 12 11 28 28 C 1.52768 * 109.00802 * 53.31188 * 27 13 12 29 29 H 0.97004 * 120.00258 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99868 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.46329 * 324.97309 * 10 9 7 32 32 H 1.08996 * 109.49507 * 58.67780 * 11 10 9 33 33 H 1.09008 * 109.49844 * 298.58326 * 11 10 9 34 34 H 1.09000 * 109.58676 * 294.84923 * 12 11 10 35 35 H 1.09006 * 109.69928 * 174.49241 * 12 11 10 36 36 H 1.07994 * 120.00848 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.88722 * 180.02562 * 18 17 16 38 38 H 1.07997 * 119.88748 * 180.02562 * 19 18 17 39 39 H 1.07996 * 125.98455 * 0.02562 * 22 21 20 40 40 H 1.07997 * 125.49743 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.11182 * 179.72261 * 26 20 19 42 42 H 1.09001 * 109.58562 * 173.14276 * 27 13 12 43 43 H 1.08998 * 109.58855 * 293.57141 * 27 13 12 44 44 H 1.08999 * 109.56192 * 185.55463 * 28 27 13 45 45 H 1.09000 * 109.36037 * 65.49540 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1805 -4.7522 -0.6092 12 6 1.9619 -6.0695 -0.6389 13 7 2.4412 -6.3658 0.7180 14 6 2.1722 -7.5526 1.2974 15 8 1.5875 -8.4155 0.6722 16 6 2.5886 -7.8049 2.6935 17 6 3.9040 -7.5535 3.0885 18 6 4.2896 -7.7894 4.3921 19 6 3.3774 -8.2752 5.3106 20 6 2.0663 -8.5285 4.9272 21 7 1.1453 -9.0216 5.8626 22 6 1.3542 -9.2096 7.1802 23 7 0.2515 -9.6833 7.7015 24 6 -0.6778 -9.8114 6.7550 25 7 -0.1766 -9.4240 5.6112 26 6 1.6700 -8.2995 3.6191 27 6 3.2139 -5.3414 1.4337 28 6 2.4231 -4.0343 1.4381 29 1 -0.4851 0.8401 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9685 -3.5505 -0.5893 32 1 0.9016 -4.4716 -1.6248 33 1 0.2813 -4.8761 -0.0056 34 1 2.8123 -5.9748 -1.3142 35 1 1.3117 -6.8748 -0.9808 36 1 4.6192 -7.1736 2.3740 37 1 5.3073 -7.5940 4.6961 38 1 3.6849 -8.4576 6.3297 39 1 2.2712 -9.0052 7.7128 40 1 -1.6814 -10.1799 6.9073 41 1 0.6524 -8.5001 3.3183 42 1 3.3875 -5.6652 2.4599 43 1 4.1684 -5.1860 0.9309 44 1 3.0288 -3.2429 1.8795 45 1 1.5123 -4.1650 2.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996981051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:10 Heat of formation + Delta-G solvation = 111.233897 kcal Electronic energy + Delta-G solvation = -28783.646278 eV Core-core repulsion = 24803.850148 eV Total energy + Delta-G solvation = -3979.796130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.69611 -40.72340 -39.01977 -37.40705 -34.84766 -34.38788 -32.38509 -31.93852 -31.41914 -30.90009 -29.83670 -29.20212 -25.58031 -24.56693 -24.14298 -23.08771 -22.75118 -21.89170 -21.61061 -20.49873 -19.50537 -18.36059 -17.16412 -17.05613 -16.68891 -16.24723 -16.09579 -15.86539 -15.34540 -14.87327 -14.81862 -14.54869 -14.27144 -13.94836 -13.81698 -13.58755 -13.50121 -13.32479 -13.06452 -12.74756 -12.50073 -12.17922 -12.04144 -11.88128 -11.63571 -11.23012 -10.98556 -10.91225 -10.85960 -10.53652 -10.51163 -10.30816 -10.28144 -9.99792 -9.89047 -9.71743 -9.47974 -8.97555 -8.79788 -8.61641 -7.02937 -5.81833 -3.11546 0.19434 0.62584 1.52854 1.73587 2.49372 2.55028 2.87854 3.30690 3.39208 3.43766 3.45280 3.81666 3.94777 4.20017 4.35028 4.46542 4.53040 4.56042 4.63810 4.90705 5.01636 5.03156 5.23366 5.26698 5.31290 5.36077 5.47601 5.56289 5.57784 5.65409 5.73673 5.82760 5.86844 5.90986 5.92554 5.97704 6.09477 6.15600 6.30636 6.32446 6.44129 6.53650 6.54594 6.81792 6.97511 7.34609 7.58293 7.62826 8.03438 8.36174 9.47299 10.04531 10.39057 11.40562 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002478 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.265119 B =11294.520452 C =11959.744611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.179 3.821 11 C -0.140 4.140 12 C 0.116 3.884 13 N -0.595 5.595 14 C 0.558 3.442 15 O -0.537 6.537 16 C -0.094 4.094 17 C -0.091 4.091 18 C -0.096 4.096 19 C -0.116 4.116 20 C 0.143 3.857 21 N -0.329 5.329 22 C 0.261 3.739 23 N -0.538 5.538 24 C 0.206 3.794 25 N -0.309 5.309 26 C -0.062 4.062 27 C 0.097 3.903 28 C -0.152 4.152 29 H 0.256 0.744 30 H 0.384 0.616 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.141 0.859 37 H 0.144 0.856 38 H 0.136 0.864 39 H 0.223 0.777 40 H 0.224 0.776 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.136 -19.400 11.768 24.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 C -0.179 4.179 12 C -0.006 4.006 13 N -0.327 5.327 14 C 0.345 3.655 15 O -0.414 6.414 16 C -0.098 4.098 17 C -0.110 4.110 18 C -0.114 4.114 19 C -0.137 4.137 20 C 0.050 3.950 21 N -0.113 5.113 22 C -0.035 4.035 23 N -0.263 5.263 24 C -0.096 4.096 25 N -0.134 5.134 26 C -0.083 4.083 27 C -0.026 4.026 28 C -0.193 4.193 29 H 0.066 0.934 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.240 0.760 40 H 0.240 0.760 41 H 0.163 0.837 42 H 0.103 0.897 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.447 -19.768 11.065 24.178 hybrid contribution 0.293 1.171 0.228 1.229 sum 8.740 -18.596 11.293 23.447 Atomic orbital electron populations 1.69653 1.05142 1.25860 1.57333 1.24758 0.95498 0.97733 1.02871 0.86282 0.78539 0.83600 0.77827 1.21237 1.21694 1.21272 1.19172 0.90908 0.84079 1.43130 0.91218 1.42428 1.05817 0.99673 1.88490 1.20165 0.94465 0.86120 0.92368 1.22220 0.99238 0.93998 1.02420 1.21684 0.98957 0.98229 0.81721 1.48098 1.53536 1.14239 1.16863 1.18181 0.79237 0.82318 0.85722 1.90797 1.42040 1.44303 1.64303 1.19813 0.94603 1.01292 0.94109 1.21499 0.95017 0.97628 0.96861 1.20936 0.99799 0.98323 0.92379 1.20950 0.90456 1.01214 1.01106 1.17375 0.87835 1.01066 0.88680 1.47744 1.09752 1.46523 1.07288 1.26208 0.99747 0.95408 0.82100 1.70637 1.00134 1.22441 1.33125 1.26218 1.00628 0.97511 0.85258 1.78245 0.89913 1.21372 1.23886 1.20862 1.00963 0.96410 0.90054 1.22108 0.94708 0.88806 0.96996 1.22615 1.00152 0.94647 1.01882 0.93394 0.78242 0.93337 0.90323 0.91789 0.91194 0.89211 0.84168 0.83832 0.84574 0.76036 0.75972 0.83652 0.89746 0.91094 0.90485 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.81 29.55 -169.99 -5.02 16.78 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 8 H 0.07 1.78 7.83 -52.48 -0.41 1.37 16 9 N -0.72 -17.39 5.12 -53.38 -0.27 -17.67 16 10 C 0.18 3.29 2.73 -67.88 -0.19 3.10 16 11 C -0.14 -2.24 5.55 -26.61 -0.15 -2.38 16 12 C 0.12 1.60 6.43 -3.71 -0.02 1.57 16 13 N -0.60 -7.98 2.98 -174.13 -0.52 -8.50 16 14 C 0.56 7.99 7.24 -12.32 -0.09 7.90 16 15 O -0.54 -9.44 16.47 5.32 0.09 -9.35 16 16 C -0.09 -1.10 5.00 -104.99 -0.52 -1.62 16 17 C -0.09 -0.75 7.36 -39.16 -0.29 -1.04 16 18 C -0.10 -0.59 10.02 -39.67 -0.40 -0.98 16 19 C -0.12 -0.77 9.47 -39.32 -0.37 -1.14 16 20 C 0.14 1.42 6.68 -83.63 -0.56 0.86 16 21 N -0.33 -3.45 3.82 -11.84 -0.05 -3.49 16 22 C 0.26 2.14 11.97 -90.37 -1.08 1.06 16 23 N -0.54 -5.43 11.19 -15.75 -0.18 -5.60 16 24 C 0.21 2.04 13.03 -91.77 -1.20 0.84 16 25 N -0.31 -3.74 12.06 29.30 0.35 -3.39 16 26 C -0.06 -0.75 9.37 -38.99 -0.37 -1.12 16 27 C 0.10 1.16 5.34 -3.93 -0.02 1.14 16 28 C -0.15 -2.43 5.64 -26.83 -0.15 -2.58 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 30 H 0.38 10.00 7.80 -40.82 -0.32 9.69 16 31 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.09 1.28 7.02 -51.93 -0.36 0.92 16 36 H 0.14 0.94 7.07 -52.49 -0.37 0.57 16 37 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 38 H 0.14 0.43 6.82 -52.49 -0.36 0.07 16 39 H 0.22 0.73 7.12 -52.49 -0.37 0.35 16 40 H 0.22 1.35 8.06 -52.49 -0.42 0.92 16 41 H 0.15 2.01 7.74 -52.49 -0.41 1.61 16 42 H 0.08 0.87 4.56 -51.93 -0.24 0.63 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -35.25 374.14 -10.66 -45.91 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.78 Total: 8.06 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -5.65 Total: -1.41 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: 0.06 Total: -65.63 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.35 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.25 -10.66 -45.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996981051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.142 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds