Wall clock time and date at job start Sat Apr 11 2020 06:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99869 * 2 1 4 4 H 1.48499 * 109.46930 * 239.99946 * 3 2 1 5 5 H 1.48504 * 109.47073 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47008 * 119.99888 * 3 2 1 7 7 C 1.38807 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99769 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99965 * 179.97438 * 9 7 2 11 11 C 1.53039 * 109.45960 * 204.99657 * 10 9 7 12 12 C 1.53191 * 109.31176 * 178.62940 * 11 10 9 13 13 N 1.46927 * 108.77581 * 54.63829 * 12 11 10 14 14 C 1.34777 * 120.63215 * 126.36457 * 13 12 11 15 15 O 1.21552 * 119.99748 * 3.79454 * 14 13 12 16 16 C 1.47858 * 120.00083 * 183.78431 * 14 13 12 17 17 C 1.39623 * 120.11133 * 309.43030 * 16 14 13 18 18 C 1.37980 * 119.98153 * 179.97438 * 17 16 14 19 19 C 1.38259 * 120.22123 * 0.02562 * 18 17 16 20 20 C 1.38921 * 120.22574 * 359.97438 * 19 18 17 21 21 N 1.40225 * 119.99432 * 179.97438 * 20 19 18 22 22 C 1.34722 * 126.84082 * 5.00020 * 21 20 19 23 23 N 1.30853 * 108.02843 * 180.02562 * 22 21 20 24 24 C 1.33256 * 109.84524 * 0.02562 * 23 22 21 25 25 N 1.30750 * 109.00166 * 0.23361 * 24 23 22 26 26 C 1.38593 * 120.01166 * 0.25846 * 20 19 18 27 27 C 1.46926 * 118.73770 * 306.64113 * 13 12 11 28 28 C 1.52768 * 109.00802 * 53.31188 * 27 13 12 29 29 H 0.97004 * 120.00258 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99868 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.46329 * 324.97309 * 10 9 7 32 32 H 1.08996 * 109.49507 * 58.67780 * 11 10 9 33 33 H 1.09008 * 109.49844 * 298.58326 * 11 10 9 34 34 H 1.09000 * 109.58676 * 294.84923 * 12 11 10 35 35 H 1.09006 * 109.69928 * 174.49241 * 12 11 10 36 36 H 1.07994 * 120.00848 * 0.02562 * 17 16 14 37 37 H 1.07997 * 119.88722 * 180.02562 * 18 17 16 38 38 H 1.07997 * 119.88748 * 180.02562 * 19 18 17 39 39 H 1.07996 * 125.98455 * 0.02562 * 22 21 20 40 40 H 1.07997 * 125.49743 * 179.97438 * 24 23 22 41 41 H 1.07992 * 120.11182 * 179.72261 * 26 20 19 42 42 H 1.09001 * 109.58562 * 173.14276 * 27 13 12 43 43 H 1.08998 * 109.58855 * 293.57141 * 27 13 12 44 44 H 1.08999 * 109.56192 * 185.55463 * 28 27 13 45 45 H 1.09000 * 109.36037 * 65.49540 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.1805 -4.7522 -0.6092 12 6 1.9619 -6.0695 -0.6389 13 7 2.4412 -6.3658 0.7180 14 6 2.1722 -7.5526 1.2974 15 8 1.5875 -8.4155 0.6722 16 6 2.5886 -7.8049 2.6935 17 6 3.9040 -7.5535 3.0885 18 6 4.2896 -7.7894 4.3921 19 6 3.3774 -8.2752 5.3106 20 6 2.0663 -8.5285 4.9272 21 7 1.1453 -9.0216 5.8626 22 6 1.3542 -9.2096 7.1802 23 7 0.2515 -9.6833 7.7015 24 6 -0.6778 -9.8114 6.7550 25 7 -0.1766 -9.4240 5.6112 26 6 1.6700 -8.2995 3.6191 27 6 3.2139 -5.3414 1.4337 28 6 2.4231 -4.0343 1.4381 29 1 -0.4851 0.8401 0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.9685 -3.5505 -0.5893 32 1 0.9016 -4.4716 -1.6248 33 1 0.2813 -4.8761 -0.0056 34 1 2.8123 -5.9748 -1.3142 35 1 1.3117 -6.8748 -0.9808 36 1 4.6192 -7.1736 2.3740 37 1 5.3073 -7.5940 4.6961 38 1 3.6849 -8.4576 6.3297 39 1 2.2712 -9.0052 7.7128 40 1 -1.6814 -10.1799 6.9073 41 1 0.6524 -8.5001 3.3183 42 1 3.3875 -5.6652 2.4599 43 1 4.1684 -5.1860 0.9309 44 1 3.0288 -3.2429 1.8795 45 1 1.5123 -4.1650 2.0224 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996981051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:09 Heat of formation + Delta-G solvation = 89.908781 kcal Electronic energy + Delta-G solvation = -28784.571004 eV Core-core repulsion = 24803.850148 eV Total energy + Delta-G solvation = -3980.720856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.38389 -41.70641 -39.87152 -38.71224 -36.23576 -35.35186 -33.86460 -32.90423 -32.32887 -31.86864 -31.06495 -30.41302 -26.92141 -25.51673 -25.15914 -24.38849 -23.88533 -22.81162 -22.34839 -21.63403 -20.56924 -19.38233 -19.00169 -17.99801 -17.36422 -17.11163 -16.92895 -16.81088 -16.64878 -16.16994 -15.71800 -15.51028 -15.39794 -15.19848 -15.08170 -14.82035 -14.68583 -14.32047 -14.19988 -13.75512 -13.42731 -13.32896 -13.19480 -12.87390 -12.79424 -12.64703 -12.57870 -12.25274 -12.22052 -12.04433 -11.85725 -11.68774 -11.34408 -11.23831 -11.10817 -11.03789 -10.84243 -10.18554 -9.76846 -9.49402 -9.00678 -7.92624 -5.21891 -0.43961 -0.09061 0.87918 1.08900 1.48597 1.50276 1.51503 1.57457 1.82503 1.90142 2.56999 2.59913 3.16468 3.32840 3.40671 3.48108 3.70742 3.78390 3.84816 3.90006 4.00480 4.02706 4.07582 4.14745 4.30696 4.32316 4.37694 4.45612 4.59874 4.72781 4.75676 4.79542 4.83731 4.89655 4.98539 5.04404 5.11433 5.21057 5.25329 5.26942 5.30545 5.45996 5.52686 5.54775 5.58987 5.93914 6.25920 6.28772 6.89556 6.94421 7.34226 8.09879 8.32768 9.31055 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.002478 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.265119 B =11294.520452 C =11959.744611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.081 4.081 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.302 1.302 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.740 5.740 10 C 0.174 3.826 11 C -0.129 4.129 12 C 0.122 3.878 13 N -0.595 5.595 14 C 0.556 3.444 15 O -0.581 6.581 16 C -0.116 4.116 17 C -0.089 4.089 18 C -0.078 4.078 19 C -0.098 4.098 20 C 0.128 3.872 21 N -0.340 5.340 22 C 0.271 3.729 23 N -0.562 5.562 24 C 0.205 3.795 25 N -0.361 5.361 26 C -0.090 4.090 27 C 0.106 3.894 28 C -0.142 4.142 29 H 0.249 0.751 30 H 0.368 0.632 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.162 0.838 37 H 0.191 0.809 38 H 0.182 0.818 39 H 0.273 0.727 40 H 0.248 0.752 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.694 -19.773 13.882 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.273 4.273 3 Si 0.802 3.198 4 H -0.203 1.203 5 H -0.229 1.229 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.101 0.899 9 N -0.379 5.379 10 C 0.065 3.935 11 C -0.169 4.169 12 C 0.000 4.000 13 N -0.326 5.326 14 C 0.345 3.655 15 O -0.462 6.462 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.096 4.096 19 C -0.119 4.119 20 C 0.036 3.964 21 N -0.125 5.125 22 C -0.022 4.022 23 N -0.288 5.288 24 C -0.097 4.097 25 N -0.186 5.186 26 C -0.112 4.112 27 C -0.016 4.016 28 C -0.182 4.182 29 H 0.057 0.943 30 H 0.199 0.801 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.180 0.820 37 H 0.208 0.792 38 H 0.199 0.801 39 H 0.289 0.711 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.120 0.880 44 H 0.090 0.910 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 13.069 -20.169 13.186 27.412 hybrid contribution -1.100 1.192 -0.377 1.665 sum 11.969 -18.976 12.808 25.835 Atomic orbital electron populations 1.69833 1.06838 1.25971 1.59929 1.25591 0.96278 1.01254 1.04128 0.85223 0.77120 0.79165 0.78339 1.20260 1.22862 1.20074 1.19623 0.91597 0.84916 1.40421 0.89907 1.42691 1.05344 1.01174 1.88648 1.20436 0.94424 0.84459 0.94154 1.22078 0.98466 0.94729 1.01577 1.21594 0.99464 0.96213 0.82765 1.48161 1.53411 1.14358 1.16669 1.18700 0.78223 0.81870 0.86735 1.90761 1.44036 1.45798 1.65651 1.19628 0.96360 1.03760 0.92258 1.21807 0.93392 0.96979 0.98587 1.21492 1.01519 0.95751 0.90841 1.21522 0.88387 0.98617 1.03349 1.17652 0.89255 1.01709 0.87799 1.47823 1.09343 1.47066 1.08228 1.27211 1.00676 0.93138 0.81224 1.70668 1.00950 1.23716 1.33516 1.26777 1.01642 0.96469 0.84775 1.78202 0.91628 1.23278 1.25534 1.20653 0.99749 0.98830 0.91927 1.22187 0.94581 0.85963 0.98892 1.22394 0.99688 0.96905 0.99261 0.94257 0.80076 0.92463 0.90660 0.93845 0.88668 0.90090 0.82036 0.79199 0.80108 0.71126 0.73659 0.87476 0.87309 0.87983 0.90950 0.94618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 3 Si 0.97 44.94 29.55 68.60 2.03 46.97 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.74 -36.13 5.12 -322.80 -1.65 -37.78 16 10 C 0.17 6.31 2.73 45.02 0.12 6.43 16 11 C -0.13 -4.24 5.55 30.67 0.17 -4.07 16 12 C 0.12 3.32 6.43 86.36 0.55 3.87 16 13 N -0.60 -15.45 2.98 -823.11 -2.45 -17.90 16 14 C 0.56 16.13 7.24 86.79 0.63 16.76 16 15 O -0.58 -21.59 16.47 -3.88 -0.06 -21.66 16 16 C -0.12 -2.63 5.00 -20.10 -0.10 -2.73 16 17 C -0.09 -1.14 7.36 22.54 0.17 -0.97 16 18 C -0.08 -0.51 10.02 22.21 0.22 -0.29 16 19 C -0.10 -0.83 9.47 22.44 0.21 -0.62 16 20 C 0.13 2.37 6.68 38.05 0.25 2.63 16 21 N -0.34 -6.87 3.82 -191.36 -0.73 -7.60 16 22 C 0.27 3.78 11.97 180.26 2.16 5.94 16 23 N -0.56 -10.67 11.19 -203.74 -2.28 -12.95 16 24 C 0.21 4.11 13.03 180.75 2.35 6.47 16 25 N -0.36 -9.15 12.06 -61.22 -0.74 -9.89 16 26 C -0.09 -2.27 9.37 22.65 0.21 -2.06 16 27 C 0.11 2.26 5.34 86.22 0.46 2.72 16 28 C -0.14 -4.40 5.64 30.53 0.17 -4.23 16 29 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.37 20.00 7.80 -92.71 -0.72 19.28 16 31 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 2.38 7.02 -2.38 -0.02 2.37 16 36 H 0.16 1.35 7.07 -2.91 -0.02 1.33 16 37 H 0.19 -0.38 8.06 -2.91 -0.02 -0.41 16 38 H 0.18 -0.14 6.82 -2.91 -0.02 -0.16 16 39 H 0.27 0.38 7.12 -2.91 -0.02 0.35 16 40 H 0.25 3.07 8.06 -2.91 -0.02 3.04 16 41 H 0.11 3.40 7.74 -2.91 -0.02 3.38 16 42 H 0.11 1.86 4.56 -2.39 -0.01 1.85 16 43 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -83.52 374.14 3.59 -79.93 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 0.31 Total: 26.04 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: 8.89 Total: 14.21 kcal Atomic # 7 Polarization: -137.91 SS G_CDS: -7.57 Total: -145.49 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -83.52 3.59 -79.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996981051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.837 kcal (2) G-P(sol) polarization free energy of solvation -83.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds