Wall clock time and date at job start Sat Apr 11 2020 06:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47354 * 239.99867 * 3 2 1 5 5 H 1.48496 * 109.47347 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46996 * 120.00196 * 3 2 1 7 7 C 1.38804 * 120.00451 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99649 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99754 * 180.02562 * 9 7 2 11 11 C 1.53072 * 109.43973 * 84.79444 * 10 9 7 12 12 C 1.53193 * 109.29242 * 181.23422 * 11 10 9 13 13 N 1.46924 * 108.89349 * 305.58067 * 12 11 10 14 14 C 1.34782 * 120.63142 * 233.51093 * 13 12 11 15 15 O 1.21632 * 119.99588 * 0.92318 * 14 13 12 16 16 C 1.47148 * 120.00121 * 180.91503 * 14 13 12 17 17 C 1.37071 * 127.21235 * 27.99930 * 16 14 13 18 18 N 1.33307 * 106.37521 * 179.90369 * 17 16 14 19 19 N 1.28503 * 109.49845 * 0.37581 * 18 17 16 20 20 N 1.28720 * 110.66694 * 359.76146 * 19 18 17 21 21 C 1.40084 * 126.05405 * 179.97438 * 20 19 18 22 22 C 1.38868 * 120.06655 * 131.22105 * 21 20 19 23 23 C 1.38118 * 119.92975 * 179.69309 * 22 21 20 24 24 C 1.38281 * 120.06715 * 0.57946 * 23 22 21 25 25 C 1.38288 * 120.13877 * 359.72034 * 24 23 22 26 26 C 1.38105 * 120.07212 * 359.97438 * 25 24 23 27 27 C 1.46923 * 118.74072 * 53.53537 * 13 12 11 28 28 C 1.53035 * 109.45972 * 205.00224 * 10 9 7 29 29 H 0.96997 * 120.00564 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99974 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.45859 * 324.97352 * 10 9 7 32 32 H 1.08997 * 109.39341 * 61.36538 * 11 10 9 33 33 H 1.08994 * 109.62498 * 301.24947 * 11 10 9 34 34 H 1.09005 * 109.59039 * 185.72139 * 12 11 10 35 35 H 1.09005 * 109.58530 * 65.43977 * 12 11 10 36 36 H 1.08001 * 126.81430 * 0.02562 * 17 16 14 37 37 H 1.08005 * 120.03644 * 359.97352 * 22 21 20 38 38 H 1.07998 * 119.96441 * 180.29419 * 23 22 21 39 39 H 1.07998 * 119.93256 * 179.74134 * 24 23 22 40 40 H 1.08003 * 119.96565 * 180.02562 * 25 24 23 41 41 H 1.07997 * 120.03928 * 180.02562 * 26 25 24 42 42 H 1.09005 * 109.58492 * 66.17955 * 27 13 12 43 43 H 1.09004 * 109.58963 * 186.45786 * 27 13 12 44 44 H 1.09003 * 109.49899 * 58.66976 * 28 10 9 45 45 H 1.09010 * 109.52056 * 298.59533 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6567 -0.0005 11 6 2.4263 -4.0324 1.4370 12 6 3.2188 -5.3435 1.4303 13 7 2.4413 -6.3657 0.7168 14 6 2.1732 -7.5530 1.2957 15 8 2.5617 -7.7799 2.4258 16 6 1.4105 -8.5744 0.5608 17 6 1.3506 -8.7463 -0.7978 18 7 0.5459 -9.7878 -1.0097 19 7 0.1211 -10.2378 0.1165 20 7 0.6051 -9.5511 1.0918 21 6 0.3540 -9.7627 2.4536 22 6 1.4087 -9.8187 3.3551 23 6 1.1575 -10.0211 4.6980 24 6 -0.1420 -10.1798 5.1435 25 6 -1.1941 -10.1308 4.2474 26 6 -0.9498 -9.9224 2.9041 27 6 1.9620 -6.0694 -0.6401 28 6 1.1806 -4.7522 -0.6104 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 0.0002 31 1 2.9685 -3.5503 -0.5904 32 1 1.5157 -4.1608 2.0220 33 1 3.0341 -3.2422 1.8776 34 1 3.3959 -5.6687 2.4556 35 1 4.1727 -5.1913 0.9253 36 1 1.8566 -8.1564 -1.5477 37 1 2.4242 -9.6996 3.0071 38 1 1.9770 -10.0600 5.4003 39 1 -0.3357 -10.3422 6.1935 40 1 -2.2079 -10.2547 4.5984 41 1 -1.7719 -9.8837 2.2048 42 1 2.8124 -5.9746 -1.3154 43 1 1.3119 -6.8748 -0.9821 44 1 0.9016 -4.4715 -1.6261 45 1 0.2811 -4.8763 -0.0072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997049660.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:12 Heat of formation + Delta-G solvation = 112.390007 kcal Electronic energy + Delta-G solvation = -29509.253175 eV Core-core repulsion = 25529.507179 eV Total energy + Delta-G solvation = -3979.745997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.75590 -41.19856 -40.30849 -38.79285 -36.37212 -35.69310 -34.10687 -33.19871 -32.12285 -31.63035 -31.11197 -30.84584 -27.04606 -25.83122 -25.07756 -24.56496 -24.15127 -23.32263 -22.82639 -21.56216 -20.65543 -19.48387 -18.93427 -18.58585 -17.90679 -17.40520 -17.15468 -16.77347 -16.43566 -16.06405 -15.69666 -15.47229 -15.38764 -15.35551 -15.02986 -14.75042 -14.52945 -14.41352 -14.09064 -13.85422 -13.61955 -13.16767 -12.99745 -12.89273 -12.79627 -12.61738 -12.44509 -12.39196 -12.23189 -12.20139 -11.95916 -11.80975 -11.68006 -11.40696 -11.18627 -10.88344 -10.63013 -10.06501 -9.94488 -9.76898 -9.00031 -7.92525 -5.21043 -0.59239 0.23166 0.26623 0.78698 1.07514 1.49065 1.51128 1.57012 1.66854 1.86740 2.56531 2.57627 2.99769 3.29791 3.40971 3.60657 3.73334 3.77123 3.79121 3.83757 4.04394 4.11264 4.12906 4.14530 4.30054 4.33558 4.38976 4.40627 4.49913 4.58010 4.72435 4.74428 4.81888 4.83687 4.92397 4.95076 5.09796 5.18082 5.20289 5.26491 5.39484 5.41036 5.47526 5.53596 5.56563 5.83959 6.11939 6.29382 6.76731 7.07098 7.35546 8.11938 8.33619 9.30903 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.002665 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.074206 B =10505.325806 C =11120.809949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.969 3.031 4 H -0.276 1.276 5 H -0.300 1.300 6 H -0.279 1.279 7 C -0.235 4.235 8 H 0.080 0.920 9 N -0.738 5.738 10 C 0.172 3.828 11 C -0.139 4.139 12 C 0.126 3.874 13 N -0.581 5.581 14 C 0.591 3.409 15 O -0.551 6.551 16 C -0.072 4.072 17 C 0.006 3.994 18 N -0.284 5.284 19 N -0.074 5.074 20 N -0.207 5.207 21 C 0.061 3.939 22 C -0.077 4.077 23 C -0.117 4.117 24 C -0.088 4.088 25 C -0.114 4.114 26 C -0.101 4.101 27 C 0.088 3.912 28 C -0.131 4.131 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.059 0.941 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.247 0.753 37 H 0.134 0.866 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.133 0.867 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.085 0.915 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.491 -23.029 6.008 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.202 1.202 5 H -0.227 1.227 6 H -0.205 1.205 7 C -0.367 4.367 8 H 0.098 0.902 9 N -0.377 5.377 10 C 0.064 3.936 11 C -0.180 4.180 12 C 0.004 3.996 13 N -0.312 5.312 14 C 0.377 3.623 15 O -0.430 6.430 16 C -0.204 4.204 17 C -0.153 4.153 18 N -0.146 5.146 19 N -0.053 5.053 20 N 0.002 4.998 21 C -0.029 4.029 22 C -0.097 4.097 23 C -0.135 4.135 24 C -0.106 4.106 25 C -0.132 4.132 26 C -0.120 4.120 27 C -0.034 4.034 28 C -0.170 4.170 29 H 0.058 0.942 30 H 0.201 0.799 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.115 0.885 36 H 0.263 0.737 37 H 0.152 0.848 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.151 0.849 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.104 0.896 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.942 -24.186 6.135 25.125 hybrid contribution 0.329 2.239 0.251 2.277 sum 3.271 -21.947 6.387 23.090 Atomic orbital electron populations 1.69808 1.06680 1.25960 1.59867 1.25529 0.96261 1.01054 1.04111 0.85273 0.77183 0.79469 0.78225 1.20191 1.22704 1.20532 1.19605 0.91530 0.85089 1.40472 0.90204 1.42668 1.05385 1.01103 1.88556 1.20465 0.94797 0.84826 0.93504 1.22476 0.99387 0.96144 1.00012 1.21690 0.94059 0.85511 0.98314 1.47876 1.52676 1.13026 1.17643 1.16731 0.79322 0.81443 0.84814 1.90773 1.54369 1.79248 1.18624 1.22199 1.05210 0.98109 0.94927 1.24813 0.99862 0.97101 0.93491 1.74913 1.12462 1.11024 1.16237 1.78366 1.19253 1.17430 0.90211 1.44914 1.28832 1.18850 1.07179 1.17942 0.96307 1.10866 0.77750 1.21456 0.98486 0.95751 0.94022 1.21418 0.98944 0.99182 0.93969 1.21848 0.91736 0.95192 1.01862 1.21449 1.01708 0.99076 0.90952 1.21244 0.93664 0.98993 0.98132 1.22681 1.00722 0.97754 0.82233 1.22080 0.98305 0.94488 1.02080 0.94218 0.79890 0.92328 0.94570 0.91745 0.89626 0.88495 0.73732 0.84828 0.82657 0.81561 0.81727 0.84904 0.86767 0.86872 0.89636 0.93582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.70 13.06 21.65 0.28 -58.42 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.24 -12.41 9.93 84.03 0.83 -11.58 16 8 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 9 N -0.74 -35.14 5.12 -322.77 -1.65 -36.79 16 10 C 0.17 5.99 2.73 45.03 0.12 6.11 16 11 C -0.14 -4.51 5.67 30.68 0.17 -4.34 16 12 C 0.13 3.14 6.43 86.36 0.56 3.69 16 13 N -0.58 -13.64 2.97 -823.08 -2.45 -16.09 16 14 C 0.59 15.52 7.56 86.58 0.65 16.17 16 15 O -0.55 -16.54 12.24 -4.13 -0.05 -16.59 16 16 C -0.07 -1.79 6.42 40.36 0.26 -1.53 16 17 C 0.01 0.13 9.72 84.19 0.82 0.95 16 18 N -0.28 -7.49 12.34 -57.47 -0.71 -8.20 16 19 N -0.07 -2.09 12.99 37.02 0.48 -1.61 16 20 N -0.21 -5.56 3.46 -176.72 -0.61 -6.18 16 21 C 0.06 1.50 6.03 38.12 0.23 1.73 16 22 C -0.08 -1.77 7.77 22.39 0.17 -1.59 16 23 C -0.12 -1.94 10.04 22.25 0.22 -1.72 16 24 C -0.09 -1.14 10.04 22.29 0.22 -0.91 16 25 C -0.11 -1.63 10.04 22.25 0.22 -1.41 16 26 C -0.10 -2.06 9.87 22.39 0.22 -1.84 16 27 C 0.09 1.70 5.45 86.36 0.47 2.17 16 28 C -0.13 -3.62 5.55 30.67 0.17 -3.45 16 29 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.37 19.41 7.80 -92.71 -0.72 18.68 16 31 H 0.06 1.96 8.08 -2.39 -0.02 1.94 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.09 2.24 7.00 -2.38 -0.02 2.22 16 35 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 36 H 0.25 3.06 6.06 -2.91 -0.02 3.04 16 37 H 0.13 3.41 6.20 -2.91 -0.02 3.39 16 38 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 41 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 42 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.11 1.89 3.57 -2.39 -0.01 1.88 16 44 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -72.09 367.72 3.45 -68.64 By element: Atomic # 1 Polarization: 29.30 SS G_CDS: 0.31 Total: 29.61 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.82 Total: -1.41 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -4.66 Total: -127.28 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.05 Total: -16.59 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -72.09 3.45 -68.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997049660.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.031 kcal (2) G-P(sol) polarization free energy of solvation -72.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds