Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86790 * 120.00322 * 2 1 4 4 H 1.48496 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46925 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47470 * 59.99693 * 3 2 1 7 7 C 1.38815 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99407 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99660 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49789 * 325.00163 * 10 9 7 12 12 C 1.53032 * 109.52284 * 204.91573 * 10 9 7 13 13 C 1.53032 * 109.54112 * 178.66821 * 12 10 9 14 14 C 1.53200 * 109.31312 * 61.36607 * 13 12 10 15 15 N 1.46931 * 108.77025 * 305.36784 * 14 13 12 16 16 C 1.34775 * 120.62913 * 233.58247 * 15 14 13 17 17 O 1.21614 * 119.99901 * 174.52775 * 16 15 14 18 18 C 1.47329 * 120.00142 * 354.53092 * 16 15 14 19 19 C 1.37906 * 126.80052 * 319.25048 * 18 16 15 20 20 N 1.34204 * 107.89423 * 179.87045 * 19 18 16 21 21 H 0.96995 * 125.16293 * 180.12979 * 20 19 18 22 22 N 1.39767 * 109.66369 * 0.40101 * 20 19 18 23 23 C 1.31389 * 109.07080 * 359.74872 * 22 20 19 24 24 C 1.48240 * 126.51097 * 180.02562 * 23 22 20 25 25 C 1.39386 * 119.73358 * 334.96021 * 24 23 22 26 26 C 1.38389 * 119.06667 * 179.97438 * 25 24 23 27 27 C 1.38798 * 118.51206 * 0.02562 * 26 25 24 28 28 C 1.38253 * 119.37258 * 359.97438 * 27 26 25 29 29 N 1.31749 * 120.90443 * 359.74364 * 28 27 26 30 30 C 1.46921 * 118.74088 * 53.61062 * 15 14 13 31 31 H 0.97008 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00551 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46346 * 298.69122 * 12 10 9 34 34 H 1.09000 * 109.46307 * 58.64464 * 12 10 9 35 35 H 1.09003 * 109.49965 * 301.41557 * 13 12 10 36 36 H 1.09001 * 109.53057 * 181.33258 * 13 12 10 37 37 H 1.09000 * 109.58515 * 185.58309 * 14 13 12 38 38 H 1.08991 * 109.58624 * 65.15012 * 14 13 12 39 39 H 1.08007 * 126.05693 * 0.02562 * 19 18 16 40 40 H 1.08001 * 120.46892 * 359.97438 * 25 24 23 41 41 H 1.07994 * 120.74385 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.31027 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.54677 * 180.02562 * 28 27 26 44 44 H 1.09002 * 109.58571 * 186.60331 * 30 15 14 45 45 H 1.08994 * 109.70579 * 66.24387 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9687 -3.5512 -0.5888 12 6 1.1807 -4.7538 -0.6071 13 6 1.9574 -6.0720 -0.6378 14 6 2.3196 -6.4802 0.7938 15 7 3.0390 -5.3705 1.4341 16 6 4.2425 -5.5718 2.0063 17 8 4.8727 -4.6286 2.4447 18 6 4.7947 -6.9344 2.1008 19 6 4.1038 -8.0857 2.4154 20 7 4.9731 -9.1079 2.3910 21 1 4.7513 -10.0343 2.5738 22 7 6.2476 -8.6338 2.0680 23 6 6.1886 -7.3341 1.8851 24 6 7.3169 -6.4415 1.5278 25 6 8.6209 -6.8117 1.8527 26 6 9.6639 -5.9683 1.5122 27 6 9.3687 -4.7805 0.8576 28 6 8.0520 -4.4759 0.5660 29 7 7.0779 -5.2992 0.8964 30 6 2.4211 -4.0375 1.4393 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 0.2816 -4.8761 -0.0031 34 1 0.9004 -4.4738 -1.6225 35 1 2.8692 -5.9437 -1.2211 36 1 1.3410 -6.8477 -1.0922 37 1 2.9567 -7.3643 0.7716 38 1 1.4096 -6.6968 1.3532 39 1 3.0494 -8.1533 2.6392 40 1 8.8145 -7.7436 2.3630 41 1 10.6845 -6.2284 1.7505 42 1 10.1603 -4.1010 0.5779 43 1 7.8192 -3.5526 0.0563 44 1 3.1253 -3.3100 1.8431 45 1 1.5198 -4.0526 2.0520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999330229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 97.935743 kcal Electronic energy + Delta-G solvation = -29603.059507 eV Core-core repulsion = 25622.686726 eV Total energy + Delta-G solvation = -3980.372781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.44134 -39.89210 -39.28393 -36.94852 -34.37446 -33.17236 -32.49664 -32.22877 -31.15950 -30.43956 -30.19823 -28.00827 -25.33163 -24.40166 -23.88143 -23.62282 -22.34170 -21.74468 -20.77996 -20.01861 -19.24768 -17.64635 -17.00195 -16.94791 -16.49401 -16.09618 -15.71612 -15.45419 -15.16314 -14.65471 -14.41372 -14.27734 -13.97075 -13.81538 -13.65916 -13.48144 -13.21905 -13.20529 -12.93062 -12.51160 -12.28589 -12.14414 -11.89909 -11.29809 -11.24787 -10.96429 -10.78995 -10.61527 -10.48704 -10.39309 -10.09580 -9.90439 -9.71831 -9.65264 -9.47147 -9.40608 -9.02327 -8.98104 -8.64358 -8.13413 -6.91022 -5.71894 -3.00727 0.65010 1.23023 1.45185 2.18938 2.36172 3.24784 3.49209 3.55438 3.57200 3.58972 3.85906 3.89792 4.35048 4.64923 4.65280 4.75269 4.83115 4.95309 4.98539 5.03749 5.13419 5.22103 5.24014 5.38885 5.43479 5.57341 5.60834 5.65343 5.73297 5.86905 5.89461 5.99008 6.05723 6.12756 6.15905 6.27968 6.32269 6.46074 6.58028 6.62271 6.80602 6.91989 6.96244 7.15244 7.20281 7.80795 7.89358 7.98121 8.46647 8.71310 9.58551 10.13506 10.48920 11.50734 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003536 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.275647 B = 7917.122125 C = 9871.490403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.073 0.927 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.104 3.896 15 N -0.605 5.605 16 C 0.594 3.406 17 O -0.520 6.520 18 C -0.240 4.240 19 C 0.090 3.910 20 N -0.463 5.463 21 H 0.444 0.556 22 N -0.275 5.275 23 C 0.166 3.834 24 C 0.195 3.805 25 C -0.144 4.144 26 C -0.082 4.082 27 C -0.166 4.166 28 C 0.111 3.889 29 N -0.436 5.436 30 C 0.098 3.902 31 H 0.254 0.746 32 H 0.384 0.616 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.191 0.809 40 H 0.137 0.863 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.161 0.839 44 H 0.090 0.910 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.325 -22.348 3.084 25.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.091 0.909 9 N -0.360 5.360 10 C 0.058 3.942 11 H 0.070 0.930 12 C -0.163 4.163 13 C -0.168 4.168 14 C -0.019 4.019 15 N -0.339 5.339 16 C 0.380 3.620 17 O -0.395 6.395 18 C -0.256 4.256 19 C -0.058 4.058 20 N -0.171 5.171 21 H 0.289 0.711 22 N -0.098 5.098 23 C -0.002 4.002 24 C 0.057 3.943 25 C -0.165 4.165 26 C -0.107 4.107 27 C -0.187 4.187 28 C -0.048 4.048 29 N -0.145 5.145 30 C -0.026 4.026 31 H 0.064 0.936 32 H 0.218 0.782 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.208 0.792 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.155 0.845 43 H 0.179 0.821 44 H 0.109 0.891 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.642 -22.453 3.108 25.954 hybrid contribution 0.155 0.838 0.390 0.937 sum 12.797 -21.615 3.498 25.362 Atomic orbital electron populations 1.69676 1.05102 1.25492 1.58015 1.24725 0.95491 0.97667 1.02971 0.86131 0.79028 0.84124 0.77084 1.20402 1.21952 1.21890 1.19347 0.91185 0.83967 1.42248 0.90926 1.42390 1.05754 0.99677 1.88165 1.20496 0.94854 0.86222 0.92676 0.92995 1.21807 0.98595 0.94243 1.01664 1.21866 1.00833 0.98039 0.96050 1.21843 0.96382 0.89808 0.93901 1.48043 1.18846 1.10803 1.56226 1.17020 0.80356 0.86513 0.78095 1.90776 1.58146 1.42595 1.47994 1.21413 0.92543 0.94650 1.16990 1.23074 0.96862 0.87109 0.98761 1.45873 1.05407 1.10058 1.55720 0.71134 1.77215 0.99756 1.10416 1.22405 1.21261 0.91553 0.89842 0.97549 1.18315 0.88903 0.90906 0.96220 1.22024 0.92388 1.00978 1.01120 1.21486 0.99444 0.93692 0.96121 1.22288 0.98539 0.97940 0.99886 1.22806 0.88018 0.98059 0.95921 1.67606 1.36453 1.01582 1.08819 1.22669 0.97477 0.81694 1.00753 0.93638 0.78185 0.92180 0.91600 0.91571 0.91364 0.90368 0.91815 0.79215 0.84519 0.84592 0.84538 0.82147 0.89117 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.97 29.55 -169.99 -5.02 17.94 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 7 C -0.24 -6.70 9.93 -15.06 -0.15 -6.85 16 8 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.72 -18.17 5.13 -53.30 -0.27 -18.44 16 10 C 0.17 3.45 2.92 -67.81 -0.20 3.25 16 11 H 0.05 1.16 8.08 -51.93 -0.42 0.74 16 12 C -0.12 -2.01 5.35 -26.70 -0.14 -2.16 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.10 1.23 5.50 -3.70 -0.02 1.21 16 15 N -0.60 -9.77 2.97 -174.07 -0.52 -10.29 16 16 C 0.59 10.44 7.08 -12.56 -0.09 10.35 16 17 O -0.52 -11.30 15.23 5.26 0.08 -11.22 16 18 C -0.24 -3.40 5.38 -102.95 -0.55 -3.95 16 19 C 0.09 0.83 9.63 -16.64 -0.16 0.67 16 20 N -0.46 -3.75 7.20 30.81 0.22 -3.53 16 21 H 0.44 1.72 8.96 -182.85 -1.64 0.08 16 22 N -0.27 -3.26 12.53 34.57 0.43 -2.83 16 23 C 0.17 2.39 7.11 -80.57 -0.57 1.81 16 24 C 0.20 2.89 6.63 -82.96 -0.55 2.34 16 25 C -0.14 -1.67 9.75 -39.10 -0.38 -2.05 16 26 C -0.08 -0.78 10.17 -39.32 -0.40 -1.18 16 27 C -0.17 -1.68 10.11 -39.37 -0.40 -2.08 16 28 C 0.11 1.47 11.17 -17.58 -0.20 1.27 16 29 N -0.44 -7.13 8.53 -9.79 -0.08 -7.21 16 30 C 0.10 1.92 6.03 -3.71 -0.02 1.90 16 31 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 4.82 -51.93 -0.25 0.52 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.19 1.04 7.36 -52.48 -0.39 0.66 16 40 H 0.14 1.34 8.04 -52.49 -0.42 0.92 16 41 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 43 H 0.16 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -37.26 375.08 -10.03 -47.29 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -7.15 Total: 8.02 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -4.09 Total: 2.27 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: 0.51 Total: -69.96 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.26 -10.03 -47.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999330229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.225 kcal (2) G-P(sol) polarization free energy of solvation -37.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds