Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86790 * 120.00322 * 2 1 4 4 H 1.48496 * 109.47323 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46925 * 299.99920 * 3 2 1 6 6 H 1.48498 * 109.47470 * 59.99693 * 3 2 1 7 7 C 1.38815 * 119.99423 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99407 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00107 * 0.02562 * 7 2 1 10 10 C 1.46509 * 119.99660 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49789 * 325.00163 * 10 9 7 12 12 C 1.53032 * 109.52284 * 204.91573 * 10 9 7 13 13 C 1.53032 * 109.54112 * 178.66821 * 12 10 9 14 14 C 1.53200 * 109.31312 * 61.36607 * 13 12 10 15 15 N 1.46931 * 108.77025 * 305.36784 * 14 13 12 16 16 C 1.34775 * 120.62913 * 233.58247 * 15 14 13 17 17 O 1.21614 * 119.99901 * 174.52775 * 16 15 14 18 18 C 1.47329 * 120.00142 * 354.53092 * 16 15 14 19 19 C 1.37906 * 126.80052 * 319.25048 * 18 16 15 20 20 N 1.34204 * 107.89423 * 179.87045 * 19 18 16 21 21 H 0.96995 * 125.16293 * 180.12979 * 20 19 18 22 22 N 1.39767 * 109.66369 * 0.40101 * 20 19 18 23 23 C 1.31389 * 109.07080 * 359.74872 * 22 20 19 24 24 C 1.48240 * 126.51097 * 180.02562 * 23 22 20 25 25 C 1.39386 * 119.73358 * 334.96021 * 24 23 22 26 26 C 1.38389 * 119.06667 * 179.97438 * 25 24 23 27 27 C 1.38798 * 118.51206 * 0.02562 * 26 25 24 28 28 C 1.38253 * 119.37258 * 359.97438 * 27 26 25 29 29 N 1.31749 * 120.90443 * 359.74364 * 28 27 26 30 30 C 1.46921 * 118.74088 * 53.61062 * 15 14 13 31 31 H 0.97008 * 119.99863 * 0.02562 * 1 2 3 32 32 H 0.96995 * 120.00551 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46346 * 298.69122 * 12 10 9 34 34 H 1.09000 * 109.46307 * 58.64464 * 12 10 9 35 35 H 1.09003 * 109.49965 * 301.41557 * 13 12 10 36 36 H 1.09001 * 109.53057 * 181.33258 * 13 12 10 37 37 H 1.09000 * 109.58515 * 185.58309 * 14 13 12 38 38 H 1.08991 * 109.58624 * 65.15012 * 14 13 12 39 39 H 1.08007 * 126.05693 * 0.02562 * 19 18 16 40 40 H 1.08001 * 120.46892 * 359.97438 * 25 24 23 41 41 H 1.07994 * 120.74385 * 180.02562 * 26 25 24 42 42 H 1.08003 * 120.31027 * 180.02562 * 27 26 25 43 43 H 1.08005 * 119.54677 * 180.02562 * 28 27 26 44 44 H 1.09002 * 109.58571 * 186.60331 * 30 15 14 45 45 H 1.08994 * 109.70579 * 66.24387 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0101 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9687 -3.5512 -0.5888 12 6 1.1807 -4.7538 -0.6071 13 6 1.9574 -6.0720 -0.6378 14 6 2.3196 -6.4802 0.7938 15 7 3.0390 -5.3705 1.4341 16 6 4.2425 -5.5718 2.0063 17 8 4.8727 -4.6286 2.4447 18 6 4.7947 -6.9344 2.1008 19 6 4.1038 -8.0857 2.4154 20 7 4.9731 -9.1079 2.3910 21 1 4.7513 -10.0343 2.5738 22 7 6.2476 -8.6338 2.0680 23 6 6.1886 -7.3341 1.8851 24 6 7.3169 -6.4415 1.5278 25 6 8.6209 -6.8117 1.8527 26 6 9.6639 -5.9683 1.5122 27 6 9.3687 -4.7805 0.8576 28 6 8.0520 -4.4759 0.5660 29 7 7.0779 -5.2992 0.8964 30 6 2.4211 -4.0375 1.4393 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0005 33 1 0.2816 -4.8761 -0.0031 34 1 0.9004 -4.4738 -1.6225 35 1 2.8692 -5.9437 -1.2211 36 1 1.3410 -6.8477 -1.0922 37 1 2.9567 -7.3643 0.7716 38 1 1.4096 -6.6968 1.3532 39 1 3.0494 -8.1533 2.6392 40 1 8.8145 -7.7436 2.3630 41 1 10.6845 -6.2284 1.7505 42 1 10.1603 -4.1010 0.5779 43 1 7.8192 -3.5526 0.0563 44 1 3.1253 -3.3100 1.8431 45 1 1.5198 -4.0526 2.0520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999330229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = 70.230276 kcal Electronic energy + Delta-G solvation = -29604.260906 eV Core-core repulsion = 25622.686726 eV Total energy + Delta-G solvation = -3981.574180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.34047 -40.82404 -40.55059 -38.41631 -36.15419 -34.05421 -33.89664 -33.38200 -32.68128 -31.63345 -31.07377 -29.66488 -26.61915 -25.85818 -25.26742 -24.52882 -23.42254 -23.20323 -21.75092 -21.29009 -20.38393 -19.16744 -18.62003 -17.85385 -17.63846 -17.03299 -16.76845 -16.66113 -16.53748 -16.07508 -15.67499 -15.52896 -15.39046 -15.19782 -14.87241 -14.72368 -14.63295 -14.21599 -13.95115 -13.81268 -13.69419 -13.55188 -13.07478 -12.90650 -12.72357 -12.47781 -12.21906 -12.16144 -11.98078 -11.85203 -11.64436 -11.30917 -11.25284 -11.09587 -10.85093 -10.77748 -10.34708 -9.94815 -9.65740 -9.49646 -8.95935 -7.97261 -5.25654 -0.24721 0.35818 0.61769 1.20887 1.44024 1.45345 1.55826 1.64447 2.02060 2.37969 2.55251 2.94623 2.99917 3.35985 3.54130 3.72552 3.80188 3.93204 4.02479 4.07363 4.11215 4.15546 4.18459 4.27753 4.32505 4.40331 4.40954 4.46858 4.61631 4.64995 4.77942 4.81226 4.92544 4.96071 4.99282 5.11899 5.15841 5.17629 5.24115 5.43314 5.47083 5.51666 5.71298 5.73772 6.17689 6.26335 6.39451 6.64765 7.05490 7.32713 7.42105 8.04925 8.31659 9.25685 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011112 B = 0.003536 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.275647 B = 7917.122125 C = 9871.490403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.242 4.242 8 H 0.061 0.939 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.021 0.979 12 C -0.115 4.115 13 C -0.122 4.122 14 C 0.100 3.900 15 N -0.604 5.604 16 C 0.591 3.409 17 O -0.578 6.578 18 C -0.288 4.288 19 C 0.132 3.868 20 N -0.436 5.436 21 H 0.466 0.534 22 N -0.281 5.281 23 C 0.146 3.854 24 C 0.161 3.839 25 C -0.145 4.145 26 C -0.074 4.074 27 C -0.155 4.155 28 C 0.079 3.921 29 N -0.484 5.484 30 C 0.115 3.885 31 H 0.253 0.747 32 H 0.378 0.622 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.238 0.762 40 H 0.154 0.846 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.042 0.958 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.743 -25.855 3.507 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.374 4.374 8 H 0.079 0.921 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.039 0.961 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.022 4.022 15 N -0.337 5.337 16 C 0.380 3.620 17 O -0.457 6.457 18 C -0.304 4.304 19 C -0.019 4.019 20 N -0.146 5.146 21 H 0.316 0.684 22 N -0.105 5.105 23 C -0.021 4.021 24 C 0.023 3.977 25 C -0.166 4.166 26 C -0.100 4.100 27 C -0.175 4.175 28 C -0.079 4.079 29 N -0.194 5.194 30 C -0.010 4.010 31 H 0.062 0.938 32 H 0.211 0.789 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.254 0.746 40 H 0.172 0.828 41 H 0.196 0.804 42 H 0.188 0.812 43 H 0.174 0.826 44 H 0.061 0.939 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.078 -26.068 3.517 29.376 hybrid contribution 0.074 1.815 0.265 1.836 sum 13.153 -24.253 3.781 27.848 Atomic orbital electron populations 1.69795 1.06217 1.26030 1.59346 1.25435 0.96387 1.00607 1.03489 0.85187 0.78001 0.80289 0.77022 1.20001 1.21345 1.21715 1.19525 0.90901 0.85581 1.41345 0.92112 1.42492 1.05486 1.00559 1.88353 1.20622 0.94245 0.86090 0.93180 0.96083 1.21710 0.98523 0.94331 1.00801 1.21859 1.00219 0.97002 0.96928 1.22237 0.97841 0.88878 0.93213 1.48049 1.18939 1.10358 1.56334 1.17572 0.79923 0.87592 0.76933 1.90732 1.59651 1.44872 1.50491 1.21167 0.93447 0.94122 1.21623 1.23560 0.98226 0.85220 0.94858 1.45927 1.04162 1.11090 1.53412 0.68402 1.77163 1.01510 1.09194 1.22637 1.21409 0.91749 0.90610 0.98379 1.18699 0.90635 0.91015 0.97308 1.22295 0.91747 1.01876 1.00700 1.21986 1.00873 0.92629 0.94485 1.22604 0.97744 0.98632 0.98524 1.23012 0.89494 0.98193 0.97222 1.67489 1.38305 1.02986 1.10580 1.22077 0.96404 0.83146 0.99400 0.93836 0.78923 0.90791 0.92431 0.93344 0.87006 0.87638 0.88269 0.74638 0.82837 0.80434 0.81168 0.82591 0.93888 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.89 13.06 21.65 0.28 -59.61 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 3 Si 0.97 48.59 29.55 68.60 2.03 50.62 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 7 C -0.24 -14.33 9.93 84.03 0.83 -13.50 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -38.45 5.13 -322.55 -1.65 -40.10 16 10 C 0.17 7.21 2.92 45.07 0.13 7.34 16 11 H 0.02 1.02 8.08 -2.39 -0.02 1.00 16 12 C -0.12 -3.64 5.35 30.62 0.16 -3.48 16 13 C -0.12 -2.78 6.08 30.67 0.19 -2.59 16 14 C 0.10 2.04 5.50 86.36 0.48 2.51 16 15 N -0.60 -19.55 2.97 -822.88 -2.45 -22.00 16 16 C 0.59 21.48 7.08 86.64 0.61 22.09 16 17 O -0.58 -27.18 15.23 -4.08 -0.06 -27.24 16 18 C -0.29 -7.90 5.38 -18.78 -0.10 -8.00 16 19 C 0.13 1.91 9.63 84.25 0.81 2.72 16 20 N -0.44 -5.38 7.20 -56.43 -0.41 -5.79 16 21 H 0.47 1.34 8.96 -213.54 -1.91 -0.57 16 22 N -0.28 -6.13 12.53 -44.55 -0.56 -6.68 16 23 C 0.15 4.17 7.11 44.06 0.31 4.48 16 24 C 0.16 4.96 6.63 41.95 0.28 5.24 16 25 C -0.15 -3.29 9.75 22.58 0.22 -3.07 16 26 C -0.07 -1.30 10.17 22.44 0.23 -1.07 16 27 C -0.15 -3.06 10.11 22.41 0.23 -2.83 16 28 C 0.08 2.27 11.17 84.71 0.95 3.21 16 29 N -0.48 -17.07 8.53 -184.89 -1.58 -18.65 16 30 C 0.12 4.73 6.03 86.36 0.52 5.25 16 31 H 0.25 15.13 8.31 -92.70 -0.77 14.36 16 32 H 0.38 20.65 7.80 -92.71 -0.72 19.93 16 33 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 1.62 4.82 -2.39 -0.01 1.61 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.24 1.11 7.36 -2.91 -0.02 1.09 16 40 H 0.15 2.81 8.04 -2.91 -0.02 2.78 16 41 H 0.18 1.57 8.06 -2.91 -0.02 1.54 16 42 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.04 2.16 7.00 -2.39 -0.02 2.14 16 45 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -90.25 375.08 0.33 -89.91 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -1.59 Total: 24.74 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 6.32 Total: 14.79 kcal Atomic # 7 Polarization: -146.46 SS G_CDS: -6.36 Total: -152.82 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.03 Total: 50.62 kcal Total: -90.25 0.33 -89.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999330229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.145 kcal (2) G-P(sol) polarization free energy of solvation -90.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds