Wall clock time and date at job start Sat Apr 11 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99749 * 2 1 4 4 H 1.48504 * 109.47201 * 269.99557 * 3 2 1 5 5 H 1.48499 * 109.47422 * 29.99697 * 3 2 1 6 6 H 1.48502 * 109.47332 * 149.99899 * 3 2 1 7 7 C 1.38814 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99794 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00095 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49249 * 324.93917 * 10 9 7 12 12 C 1.53040 * 109.52360 * 204.85349 * 10 9 7 13 13 C 1.53041 * 109.53578 * 178.66911 * 12 10 9 14 14 C 1.52754 * 109.38385 * 61.24020 * 13 12 10 15 15 N 1.46930 * 109.01111 * 305.58742 * 14 13 12 16 16 C 1.34778 * 120.62969 * 233.58581 * 15 14 13 17 17 O 1.21576 * 119.99375 * 183.51217 * 16 15 14 18 18 C 1.47655 * 120.00430 * 3.51230 * 16 15 14 19 19 C 1.40239 * 120.49514 * 309.79433 * 18 16 15 20 20 C 1.38016 * 118.35666 * 179.77138 * 19 18 16 21 21 C 1.39158 * 119.25552 * 0.49462 * 20 19 18 22 22 N 1.39496 * 119.52950 * 179.77413 * 21 20 19 23 23 C 1.37230 * 126.49633 * 184.72496 * 22 21 20 24 24 C 1.34586 * 106.82329 * 179.97438 * 23 22 21 25 25 N 1.34179 * 108.23413 * 359.74217 * 24 23 22 26 26 C 1.30450 * 109.38659 * 0.43275 * 25 24 23 27 27 N 1.32429 * 120.94297 * 359.49058 * 21 20 19 28 28 C 1.31639 * 121.80128 * 0.25461 * 27 21 20 29 29 C 1.46929 * 118.73500 * 53.30712 * 15 14 13 30 30 H 0.96993 * 120.00419 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00057 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46214 * 298.68694 * 12 10 9 33 33 H 1.09000 * 109.45639 * 58.64843 * 12 10 9 34 34 H 1.09002 * 109.49958 * 181.31722 * 13 12 10 35 35 H 1.09007 * 109.49499 * 301.38226 * 13 12 10 36 36 H 1.09001 * 109.51306 * 185.70645 * 14 13 12 37 37 H 1.09003 * 109.43450 * 65.42462 * 14 13 12 38 38 H 1.08002 * 120.81734 * 0.04343 * 19 18 16 39 39 H 1.08005 * 120.37420 * 180.24089 * 20 19 18 40 40 H 1.07998 * 126.58687 * 359.95803 * 23 22 21 41 41 H 1.08000 * 125.88445 * 180.02562 * 24 23 22 42 42 H 1.08002 * 125.72253 * 179.83352 * 26 25 24 43 43 H 1.08007 * 119.68363 * 179.97438 * 28 27 21 44 44 H 1.08997 * 109.58127 * 66.43494 * 29 15 14 45 45 H 1.08998 * 109.58482 * 186.85600 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5655 -3.2065 0.5910 12 6 5.5011 -2.2594 0.6079 13 6 6.2544 -3.5913 0.6385 14 6 6.4236 -4.1109 -0.7880 15 7 5.1049 -4.1778 -1.4326 16 6 4.6768 -5.3212 -2.0034 17 8 3.6117 -5.3464 -2.5890 18 6 5.5012 -6.5431 -1.9174 19 6 6.8603 -6.5103 -2.2615 20 6 7.5905 -7.6771 -2.1602 21 6 6.9575 -8.8406 -1.7336 22 7 7.6890 -10.0242 -1.6337 23 6 7.1948 -11.2650 -1.3187 24 6 8.2380 -12.1152 -1.3338 25 7 9.3407 -11.4211 -1.6542 26 6 9.0270 -10.1672 -1.8307 27 7 5.6719 -8.8391 -1.4159 28 6 4.9396 -7.7480 -1.4930 29 6 4.2594 -2.9761 -1.4376 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 6.0562 -1.5422 0.0034 33 1 5.3993 -1.8764 1.6233 34 1 7.2346 -3.4446 1.0922 35 1 5.6878 -4.3163 1.2229 36 1 6.8687 -5.1056 -0.7627 37 1 7.0694 -3.4334 -1.3466 38 1 7.3251 -5.5936 -2.5932 39 1 8.6405 -7.6879 -2.4131 40 1 6.1663 -11.5118 -1.1002 41 1 8.1943 -13.1746 -1.1285 42 1 9.7139 -9.3763 -2.0937 43 1 3.8938 -7.7858 -1.2257 44 1 4.7252 -2.2043 -2.0502 45 1 3.2771 -3.2223 -1.8407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999844881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:41 Heat of formation + Delta-G solvation = 101.849215 kcal Electronic energy + Delta-G solvation = -28740.278968 eV Core-core repulsion = 24760.075888 eV Total energy + Delta-G solvation = -3980.203080 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.81334 -41.07188 -39.58941 -37.53380 -35.01530 -34.54695 -33.39166 -32.39640 -31.46804 -30.81713 -29.79262 -28.84674 -26.09666 -24.66654 -24.46863 -23.78903 -22.03254 -21.71780 -21.36190 -20.69926 -19.54776 -19.24406 -17.69332 -17.58040 -16.93510 -16.34265 -16.06739 -15.76189 -15.26814 -14.94439 -14.60698 -14.46470 -14.37389 -14.28793 -14.12776 -13.98413 -13.90731 -13.69206 -13.36476 -13.08075 -12.79997 -12.67131 -12.53204 -11.81193 -11.41282 -11.16481 -11.01866 -10.88973 -10.81643 -10.62274 -10.50287 -10.43354 -10.34214 -10.01240 -9.89033 -9.65190 -9.27925 -9.20897 -8.93253 -8.57257 -7.38389 -5.83569 -3.21817 -0.05833 0.53517 1.64635 1.92290 2.52440 2.66749 2.87079 3.23656 3.30976 3.33395 3.40022 3.66689 3.93641 4.09810 4.19650 4.23681 4.35417 4.51568 4.61915 4.68236 4.84598 4.93621 4.99720 5.03307 5.11336 5.21393 5.25988 5.30633 5.34702 5.38680 5.59873 5.65701 5.66309 5.75496 5.80474 5.88808 5.95480 6.10721 6.21432 6.25425 6.45808 6.59526 6.60743 6.76278 7.16344 7.36010 7.50351 7.90728 8.05891 8.34716 9.11343 9.82933 10.00753 11.34180 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028522 B = 0.002170 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.477362 B =12903.089107 C =13357.914167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.596 5.596 16 C 0.559 3.441 17 O -0.523 6.523 18 C -0.178 4.178 19 C -0.019 4.019 20 C -0.184 4.184 21 C 0.358 3.642 22 N -0.413 5.413 23 C -0.022 4.022 24 C -0.031 4.031 25 N -0.477 5.477 26 C 0.194 3.806 27 N -0.497 5.497 28 C 0.187 3.813 29 C 0.092 3.908 30 H 0.261 0.739 31 H 0.363 0.637 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.154 0.846 39 H 0.150 0.850 40 H 0.184 0.816 41 H 0.177 0.823 42 H 0.213 0.787 43 H 0.178 0.822 44 H 0.064 0.936 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.404 -17.082 -2.465 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.330 5.330 16 C 0.344 3.656 17 O -0.399 6.399 18 C -0.185 4.185 19 C -0.045 4.045 20 C -0.206 4.206 21 C 0.130 3.870 22 N -0.095 5.095 23 C -0.151 4.151 24 C -0.175 4.175 25 N -0.194 5.194 26 C -0.088 4.088 27 N -0.208 5.208 28 C 0.028 3.972 29 C -0.032 4.032 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.172 0.828 39 H 0.168 0.832 40 H 0.201 0.799 41 H 0.195 0.805 42 H 0.229 0.771 43 H 0.195 0.805 44 H 0.082 0.918 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 20.906 -18.213 -2.554 27.844 hybrid contribution 0.123 2.364 -0.198 2.375 sum 21.030 -15.849 -2.753 26.477 Atomic orbital electron populations 1.69700 1.05127 1.25951 1.56778 1.24696 0.95236 0.97251 1.01647 0.86559 0.79180 0.84993 0.77801 1.21006 1.21659 1.20318 1.19081 0.80313 0.94875 1.43815 0.89031 1.42716 1.04166 1.01654 1.89793 1.20457 0.91013 0.89647 0.92681 0.92177 1.21872 0.96662 0.96323 1.01981 1.21800 1.01005 0.98263 0.95822 1.21943 0.84540 1.01814 0.94256 1.48196 1.18208 1.11511 1.55035 1.17931 0.85483 0.82510 0.79654 1.90871 1.22521 1.84398 1.42090 1.21105 0.95174 0.96668 1.05508 1.21683 0.91920 0.98328 0.92585 1.21465 1.02231 0.91519 1.05415 1.18340 0.89099 0.84844 0.94748 1.43140 1.08649 1.06236 1.51488 1.23017 1.01689 0.83218 1.07220 1.22437 0.87972 1.00416 1.06665 1.70338 1.29482 1.02363 1.17214 1.25387 0.81736 0.96723 1.04932 1.67086 1.04636 1.31120 1.17940 1.22743 0.99493 0.84659 0.90334 1.22816 0.95637 0.83854 1.00872 0.92928 0.80408 0.92038 0.91180 0.90750 0.91357 0.89991 0.90973 0.82796 0.83246 0.79903 0.80549 0.77069 0.80503 0.91766 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.97 55.49 0.78 -27.96 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.36 27.74 -169.99 -4.71 16.64 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 7 C -0.25 -6.86 10.41 -15.06 -0.16 -7.01 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.74 -16.46 4.93 -53.31 -0.26 -16.72 16 10 C 0.17 3.04 2.92 -67.81 -0.20 2.84 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C -0.13 -1.71 5.36 -26.69 -0.14 -1.86 16 13 C -0.13 -1.27 6.06 -26.84 -0.16 -1.43 16 14 C 0.10 0.87 5.37 -3.93 -0.02 0.85 16 15 N -0.60 -7.73 2.98 -174.22 -0.52 -8.25 16 16 C 0.56 7.74 7.26 -12.42 -0.09 7.65 16 17 O -0.52 -9.59 16.47 5.30 0.09 -9.50 16 18 C -0.18 -1.83 5.02 -104.81 -0.53 -2.35 16 19 C -0.02 -0.13 7.49 -38.91 -0.29 -0.42 16 20 C -0.18 -1.16 9.48 -39.32 -0.37 -1.53 16 21 C 0.36 3.17 7.49 -154.50 -1.16 2.02 16 22 N -0.41 -3.61 2.98 -63.81 -0.19 -3.80 16 23 C -0.02 -0.19 11.16 -16.43 -0.18 -0.38 16 24 C -0.03 -0.27 11.85 -17.82 -0.21 -0.48 16 25 N -0.48 -4.74 11.24 -14.46 -0.16 -4.90 16 26 C 0.19 1.50 11.89 -89.54 -1.06 0.44 16 27 N -0.50 -5.11 9.87 -11.99 -0.12 -5.23 16 28 C 0.19 1.93 10.90 -17.15 -0.19 1.74 16 29 C 0.09 1.53 6.01 -3.71 -0.02 1.51 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 7.84 5.66 -40.82 -0.23 7.61 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.57 4.54 -51.93 -0.24 0.33 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.15 0.75 7.10 -52.49 -0.37 0.37 16 39 H 0.15 0.44 6.75 -52.48 -0.35 0.08 16 40 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 41 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.21 0.76 7.05 -52.49 -0.37 0.39 16 43 H 0.18 1.73 8.06 -52.48 -0.42 1.31 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.10 1.99 7.02 -51.93 -0.36 1.63 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -35.55 370.66 -10.15 -45.70 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.74 Total: 6.73 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -4.88 Total: 1.72 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -0.48 Total: -66.86 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.71 Total: 16.64 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.55 -10.15 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999844881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.546 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds