Wall clock time and date at job start Sat Apr 11 2020 06:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 119.99749 * 2 1 4 4 H 1.48504 * 109.47201 * 269.99557 * 3 2 1 5 5 H 1.48499 * 109.47422 * 29.99697 * 3 2 1 6 6 H 1.48502 * 109.47332 * 149.99899 * 3 2 1 7 7 C 1.38814 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99794 * 0.02562 * 7 2 1 9 9 N 1.36934 * 119.99891 * 180.02562 * 7 2 1 10 10 C 1.46503 * 120.00095 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49249 * 324.93917 * 10 9 7 12 12 C 1.53040 * 109.52360 * 204.85349 * 10 9 7 13 13 C 1.53041 * 109.53578 * 178.66911 * 12 10 9 14 14 C 1.52754 * 109.38385 * 61.24020 * 13 12 10 15 15 N 1.46930 * 109.01111 * 305.58742 * 14 13 12 16 16 C 1.34778 * 120.62969 * 233.58581 * 15 14 13 17 17 O 1.21576 * 119.99375 * 183.51217 * 16 15 14 18 18 C 1.47655 * 120.00430 * 3.51230 * 16 15 14 19 19 C 1.40239 * 120.49514 * 309.79433 * 18 16 15 20 20 C 1.38016 * 118.35666 * 179.77138 * 19 18 16 21 21 C 1.39158 * 119.25552 * 0.49462 * 20 19 18 22 22 N 1.39496 * 119.52950 * 179.77413 * 21 20 19 23 23 C 1.37230 * 126.49633 * 184.72496 * 22 21 20 24 24 C 1.34586 * 106.82329 * 179.97438 * 23 22 21 25 25 N 1.34179 * 108.23413 * 359.74217 * 24 23 22 26 26 C 1.30450 * 109.38659 * 0.43275 * 25 24 23 27 27 N 1.32429 * 120.94297 * 359.49058 * 21 20 19 28 28 C 1.31639 * 121.80128 * 0.25461 * 27 21 20 29 29 C 1.46929 * 118.73500 * 53.30712 * 15 14 13 30 30 H 0.96993 * 120.00419 * 0.02562 * 1 2 3 31 31 H 0.96999 * 120.00057 * 359.97438 * 9 7 2 32 32 H 1.08995 * 109.46214 * 298.68694 * 12 10 9 33 33 H 1.09000 * 109.45639 * 58.64843 * 12 10 9 34 34 H 1.09002 * 109.49958 * 181.31722 * 13 12 10 35 35 H 1.09007 * 109.49499 * 301.38226 * 13 12 10 36 36 H 1.09001 * 109.51306 * 185.70645 * 14 13 12 37 37 H 1.09003 * 109.43450 * 65.42462 * 14 13 12 38 38 H 1.08002 * 120.81734 * 0.04343 * 19 18 16 39 39 H 1.08005 * 120.37420 * 180.24089 * 20 19 18 40 40 H 1.07998 * 126.58687 * 359.95803 * 23 22 21 41 41 H 1.08000 * 125.88445 * 180.02562 * 24 23 22 42 42 H 1.08002 * 125.72253 * 179.83352 * 26 25 24 43 43 H 1.08007 * 119.68363 * 179.97438 * 28 27 21 44 44 H 1.08997 * 109.58127 * 66.43494 * 29 15 14 45 45 H 1.08998 * 109.58482 * 186.85600 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1122 -2.4708 0.0011 11 1 3.5655 -3.2065 0.5910 12 6 5.5011 -2.2594 0.6079 13 6 6.2544 -3.5913 0.6385 14 6 6.4236 -4.1109 -0.7880 15 7 5.1049 -4.1778 -1.4326 16 6 4.6768 -5.3212 -2.0034 17 8 3.6117 -5.3464 -2.5890 18 6 5.5012 -6.5431 -1.9174 19 6 6.8603 -6.5103 -2.2615 20 6 7.5905 -7.6771 -2.1602 21 6 6.9575 -8.8406 -1.7336 22 7 7.6890 -10.0242 -1.6337 23 6 7.1948 -11.2650 -1.3187 24 6 8.2380 -12.1152 -1.3338 25 7 9.3407 -11.4211 -1.6542 26 6 9.0270 -10.1672 -1.8307 27 7 5.6719 -8.8391 -1.4159 28 6 4.9396 -7.7480 -1.4930 29 6 4.2594 -2.9761 -1.4376 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0007 32 1 6.0562 -1.5422 0.0034 33 1 5.3993 -1.8764 1.6233 34 1 7.2346 -3.4446 1.0922 35 1 5.6878 -4.3163 1.2229 36 1 6.8687 -5.1056 -0.7627 37 1 7.0694 -3.4334 -1.3466 38 1 7.3251 -5.5936 -2.5932 39 1 8.6405 -7.6879 -2.4131 40 1 6.1663 -11.5118 -1.1002 41 1 8.1943 -13.1746 -1.1285 42 1 9.7139 -9.3763 -2.0937 43 1 3.8938 -7.7858 -1.2257 44 1 4.7252 -2.2043 -2.0502 45 1 3.2771 -3.2223 -1.8407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999844881.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:40 Heat of formation + Delta-G solvation = 78.622785 kcal Electronic energy + Delta-G solvation = -28741.286141 eV Core-core repulsion = 24760.075888 eV Total energy + Delta-G solvation = -3981.210254 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.42099 -41.92153 -40.52547 -38.77189 -36.43828 -35.38676 -34.32464 -33.68029 -32.96222 -31.62573 -30.47190 -30.24166 -27.07017 -25.80186 -25.25728 -25.06479 -23.16529 -22.61670 -22.03994 -21.81001 -20.60883 -19.90431 -19.55009 -18.58686 -17.72136 -17.30551 -16.85132 -16.71556 -16.35797 -16.28295 -15.76717 -15.50433 -15.37341 -15.00481 -14.93621 -14.90001 -14.80347 -14.70212 -14.34181 -14.25487 -14.04858 -13.88433 -13.66731 -13.32496 -12.97333 -12.58544 -12.12167 -12.01517 -11.94539 -11.83714 -11.81335 -11.39366 -11.37714 -11.25946 -11.12541 -11.04198 -10.78510 -9.99521 -9.85162 -9.55147 -9.28225 -8.04709 -5.41154 -0.73878 -0.06364 0.98973 1.30890 1.36729 1.42225 1.49325 1.52358 1.88048 2.05797 2.47157 2.52699 3.01756 3.25549 3.28566 3.42776 3.50753 3.60331 3.66749 3.84620 3.94112 4.02721 4.06907 4.10970 4.24522 4.35456 4.38858 4.44428 4.52719 4.57989 4.67947 4.71069 4.76276 4.84091 4.88994 4.99075 5.06004 5.12287 5.16358 5.36002 5.41828 5.44678 5.61861 5.73840 6.02523 6.18635 6.30264 6.53196 6.90397 6.98061 7.04866 7.77136 7.98892 9.16897 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.028522 B = 0.002170 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.477362 B =12903.089107 C =13357.914167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.242 1.242 7 C -0.237 4.237 8 H 0.045 0.955 9 N -0.743 5.743 10 C 0.168 3.832 11 H 0.028 0.972 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.092 3.908 15 N -0.593 5.593 16 C 0.557 3.443 17 O -0.583 6.583 18 C -0.188 4.188 19 C -0.005 4.005 20 C -0.162 4.162 21 C 0.348 3.652 22 N -0.419 5.419 23 C -0.042 4.042 24 C -0.037 4.037 25 N -0.513 5.513 26 C 0.205 3.795 27 N -0.517 5.517 28 C 0.174 3.826 29 C 0.105 3.895 30 H 0.258 0.742 31 H 0.371 0.629 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.054 0.946 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.189 0.811 39 H 0.197 0.803 40 H 0.185 0.815 41 H 0.192 0.808 42 H 0.256 0.744 43 H 0.164 0.836 44 H 0.077 0.923 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.400 -16.244 -2.650 31.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.166 1.166 7 C -0.368 4.368 8 H 0.063 0.937 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.047 0.953 12 C -0.160 4.160 13 C -0.163 4.163 14 C -0.029 4.029 15 N -0.324 5.324 16 C 0.345 3.655 17 O -0.464 6.464 18 C -0.194 4.194 19 C -0.031 4.031 20 C -0.183 4.183 21 C 0.119 3.881 22 N -0.102 5.102 23 C -0.171 4.171 24 C -0.180 4.180 25 N -0.230 5.230 26 C -0.076 4.076 27 N -0.229 5.229 28 C 0.015 3.985 29 C -0.020 4.020 30 H 0.067 0.933 31 H 0.205 0.795 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.134 0.866 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.206 0.794 39 H 0.214 0.786 40 H 0.202 0.798 41 H 0.209 0.791 42 H 0.271 0.729 43 H 0.181 0.819 44 H 0.095 0.905 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 27.000 -17.431 -2.713 32.252 hybrid contribution -1.729 1.906 -0.134 2.577 sum 25.271 -15.524 -2.847 29.795 Atomic orbital electron populations 1.69917 1.07490 1.26874 1.59206 1.25645 0.96201 1.01782 1.02170 0.85297 0.78832 0.78713 0.78203 1.20311 1.22448 1.16591 1.18945 0.82783 0.93093 1.42003 0.93737 1.42635 1.02271 1.03782 1.89931 1.20653 0.93247 0.87039 0.93178 0.95344 1.21804 0.93599 0.99109 1.01466 1.21817 1.02272 0.95648 0.96545 1.22370 0.82402 1.04401 0.93701 1.48208 1.19324 1.09994 1.54903 1.18496 0.84982 0.83566 0.78483 1.90840 1.25378 1.85361 1.44816 1.20757 0.96485 0.94414 1.07759 1.22016 0.89989 1.00040 0.91006 1.21900 1.04049 0.89565 1.02795 1.18724 0.88790 0.85822 0.94753 1.43277 1.09123 1.06080 1.51745 1.23167 1.02013 0.83756 1.08147 1.22758 0.87806 1.01277 1.06183 1.70354 1.30107 1.03675 1.18822 1.26266 0.81609 0.97078 1.02654 1.67005 1.05943 1.31042 1.18919 1.22555 0.99322 0.85153 0.91436 1.22264 0.94306 0.85748 0.99711 0.93287 0.79465 0.89943 0.91582 0.86573 0.92701 0.87182 0.87602 0.79380 0.78597 0.79818 0.79104 0.72851 0.81888 0.90476 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.01 13.97 21.65 0.30 -63.71 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 3 Si 0.96 44.36 27.74 68.60 1.90 46.26 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 6 H -0.24 -9.63 6.52 99.48 0.65 -8.98 16 7 C -0.24 -13.61 10.41 84.03 0.87 -12.74 16 8 H 0.04 2.90 8.06 -2.91 -0.02 2.88 16 9 N -0.74 -33.23 4.93 -322.57 -1.59 -34.82 16 10 C 0.17 5.98 2.92 45.07 0.13 6.11 16 11 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 12 C -0.12 -2.84 5.36 30.62 0.16 -2.67 16 13 C -0.12 -1.89 6.06 30.53 0.19 -1.71 16 14 C 0.09 1.21 5.37 86.22 0.46 1.67 16 15 N -0.59 -14.71 2.98 -823.36 -2.45 -17.17 16 16 C 0.56 15.65 7.26 86.73 0.63 16.28 16 17 O -0.58 -23.14 16.47 -3.96 -0.07 -23.21 16 18 C -0.19 -3.61 5.02 -19.99 -0.10 -3.71 16 19 C 0.00 -0.04 7.49 22.70 0.17 0.13 16 20 C -0.16 -1.19 9.48 22.44 0.21 -0.98 16 21 C 0.35 5.20 7.49 132.89 1.00 6.20 16 22 N -0.42 -6.27 2.98 -355.79 -1.06 -7.33 16 23 C -0.04 -0.70 11.16 83.01 0.93 0.23 16 24 C -0.04 -0.60 11.85 83.50 0.99 0.39 16 25 N -0.51 -9.03 11.24 -199.65 -2.24 -11.28 16 26 C 0.21 2.42 11.89 179.97 2.14 4.56 16 27 N -0.52 -10.36 9.87 -191.84 -1.89 -12.25 16 28 C 0.17 3.68 10.90 85.04 0.93 4.60 16 29 C 0.11 3.56 6.01 86.36 0.52 4.08 16 30 H 0.26 15.92 8.31 -92.71 -0.77 15.15 16 31 H 0.37 15.32 5.66 -92.71 -0.52 14.80 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 36 H 0.11 0.90 4.54 -2.39 -0.01 0.89 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.19 0.55 7.10 -2.91 -0.02 0.53 16 39 H 0.20 -0.38 6.75 -2.91 -0.02 -0.40 16 40 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16 41 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.26 0.29 7.05 -2.91 -0.02 0.27 16 43 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 44 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.05 2.03 7.02 -2.39 -0.02 2.02 16 Total: -1.00 -87.34 370.66 3.04 -84.30 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.45 Total: 20.23 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: 9.69 Total: 18.97 kcal Atomic # 7 Polarization: -137.62 SS G_CDS: -8.94 Total: -146.55 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.07 Total: -23.21 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Total: -87.34 3.04 -84.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999844881.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.923 kcal (2) G-P(sol) polarization free energy of solvation -87.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds