Wall clock time and date at job start Sat Apr 11 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99534 * 2 1 4 4 H 1.48512 * 109.47012 * 240.27601 * 3 2 1 5 5 H 1.48495 * 109.47562 * 0.27847 * 3 2 1 6 6 H 1.48502 * 109.46860 * 120.28255 * 3 2 1 7 7 C 1.38810 * 120.00353 * 180.28001 * 2 1 3 8 8 H 1.08003 * 120.00234 * 179.72098 * 7 2 1 9 9 N 1.36937 * 119.99638 * 359.71949 * 7 2 1 10 10 C 1.46503 * 119.99787 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49916 * 34.93757 * 10 9 7 12 12 C 1.53039 * 109.49886 * 155.00153 * 10 9 7 13 13 C 1.53042 * 109.54133 * 181.31770 * 12 10 9 14 14 C 1.53190 * 109.31213 * 298.63504 * 13 12 10 15 15 N 1.46927 * 108.77321 * 54.63627 * 14 13 12 16 16 C 1.34776 * 120.63156 * 126.41827 * 15 14 13 17 17 O 1.21589 * 120.00201 * 174.57283 * 16 15 14 18 18 C 1.47589 * 119.99906 * 354.56821 * 16 15 14 19 19 C 1.39979 * 120.59605 * 305.12467 * 18 16 15 20 20 C 1.38351 * 118.34737 * 180.02562 * 19 18 16 21 21 C 1.38387 * 119.45284 * 359.97438 * 20 19 18 22 22 N 1.31840 * 121.18369 * 359.97438 * 21 20 19 23 23 C 1.32255 * 121.80227 * 359.74881 * 22 21 20 24 24 N 1.39358 * 119.79630 * 180.26426 * 23 22 21 25 25 C 1.35933 * 126.11001 * 333.81306 * 24 23 22 26 26 C 1.35230 * 107.60364 * 179.97438 * 25 24 23 27 27 C 1.40011 * 107.97222 * 0.02562 * 26 25 24 28 28 N 1.30781 * 108.37982 * 359.75657 * 27 26 25 29 29 C 1.46929 * 118.73652 * 306.38668 * 15 14 13 30 30 H 0.97000 * 119.99920 * 359.71949 * 1 2 3 31 31 H 0.96996 * 120.00391 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.45866 * 301.33916 * 12 10 9 33 33 H 1.09000 * 109.45779 * 61.30787 * 12 10 9 34 34 H 1.09002 * 109.49086 * 58.58751 * 13 12 10 35 35 H 1.08995 * 109.49958 * 178.68190 * 13 12 10 36 36 H 1.08995 * 109.58580 * 174.41678 * 14 13 12 37 37 H 1.08999 * 109.58289 * 294.70554 * 14 13 12 38 38 H 1.08005 * 120.82443 * 359.97438 * 19 18 16 39 39 H 1.07996 * 120.26735 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.40459 * 179.97438 * 21 20 19 41 41 H 1.08001 * 126.19981 * 359.97438 * 25 24 23 42 42 H 1.08001 * 126.01428 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.80588 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.58770 * 293.82254 * 29 15 14 45 45 H 1.09007 * 109.58554 * 173.39995 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2160 5 1 1.2851 2.7465 0.0068 6 1 3.1090 1.6935 1.2091 7 6 2.0103 -1.2021 -0.0059 8 1 3.0904 -1.2020 -0.0104 9 7 1.3257 -2.3880 -0.0059 10 6 2.0582 -3.6567 -0.0126 11 1 2.9723 -3.5522 0.5718 12 6 1.1842 -4.7545 0.5981 13 6 1.9606 -6.0732 0.6216 14 6 2.3140 -6.4786 -0.8127 15 7 3.0301 -5.3681 -1.4552 16 6 4.2301 -5.5688 -2.0350 17 8 4.7673 -4.6669 -2.6485 18 6 4.8921 -6.8833 -1.9251 19 6 5.1271 -7.4601 -0.6715 20 6 5.7515 -8.6937 -0.6227 21 6 6.1217 -9.3162 -1.8020 22 7 5.8896 -8.7550 -2.9721 23 6 5.2914 -7.5800 -3.0752 24 7 5.0619 -7.0278 -4.3340 25 6 5.7817 -7.2746 -5.4604 26 6 5.2372 -6.5463 -6.4614 27 6 4.1538 -5.8320 -5.9360 28 7 4.0451 -6.1228 -4.6656 29 6 2.4128 -4.0348 -1.4541 30 1 -0.4850 0.8400 0.0041 31 1 0.3557 -2.3881 -0.0021 32 1 0.9101 -4.4763 1.6158 33 1 0.2816 -4.8753 -0.0009 34 1 2.8758 -5.9461 1.1999 35 1 1.3461 -6.8491 1.0781 36 1 2.9509 -7.3630 -0.7960 37 1 1.4007 -6.6963 -1.3664 38 1 4.8291 -6.9543 0.2350 39 1 5.9484 -9.1670 0.3279 40 1 6.6095 -10.2790 -1.7629 41 1 6.6339 -7.9330 -5.5413 42 1 5.5787 -6.5198 -7.4856 43 1 3.5137 -5.1590 -6.4872 44 1 1.5074 -4.0508 -2.0610 45 1 3.1148 -3.3068 -1.8607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999859541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:48 Heat of formation + Delta-G solvation = 118.001216 kcal Electronic energy + Delta-G solvation = -29997.584321 eV Core-core repulsion = 26018.081644 eV Total energy + Delta-G solvation = -3979.502677 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.78058 -40.46880 -39.30336 -37.17822 -34.56591 -33.88505 -33.03344 -32.10768 -31.13905 -30.45742 -29.73368 -28.21121 -25.84668 -24.37161 -24.14953 -23.81061 -21.88256 -21.41407 -21.05714 -20.40202 -19.10963 -18.52251 -17.32876 -17.09272 -16.98542 -15.94328 -15.77748 -15.34524 -14.85135 -14.72156 -14.52144 -14.26524 -14.11373 -13.84788 -13.74765 -13.45879 -13.43813 -13.38453 -12.87788 -12.81341 -12.62840 -12.36029 -12.19348 -11.38183 -11.08852 -10.85110 -10.82549 -10.73381 -10.61581 -10.52018 -10.27777 -10.22403 -10.15604 -9.82083 -9.71998 -9.48776 -9.26865 -9.04370 -8.52172 -8.26815 -6.98798 -5.77684 -3.07357 0.27959 0.62376 1.90687 2.00863 2.75163 2.84338 3.13367 3.42212 3.46943 3.50438 3.52517 3.97682 4.21397 4.40857 4.47882 4.59257 4.63052 4.83889 4.90115 4.91700 4.99778 5.08006 5.24777 5.31755 5.49478 5.51128 5.57441 5.58638 5.62918 5.64311 5.78956 5.83016 5.93059 5.99381 6.04836 6.16713 6.21620 6.36440 6.45427 6.51908 6.77056 6.84098 6.91188 7.03979 7.18201 7.63215 7.70733 7.71904 8.39736 8.44774 9.52266 10.06169 10.41513 11.44506 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003344 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.044542 B = 8369.947745 C = 9600.472203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.105 3.895 15 N -0.595 5.595 16 C 0.573 3.427 17 O -0.517 6.517 18 C -0.163 4.163 19 C -0.027 4.027 20 C -0.187 4.187 21 C 0.143 3.857 22 N -0.505 5.505 23 C 0.407 3.593 24 N -0.329 5.329 25 C 0.072 3.928 26 C -0.259 4.259 27 C 0.062 3.938 28 N -0.252 5.252 29 C 0.099 3.901 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.171 0.829 41 H 0.178 0.822 42 H 0.155 0.845 43 H 0.191 0.809 44 H 0.061 0.939 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 -23.670 -4.245 26.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.019 4.019 15 N -0.328 5.328 16 C 0.358 3.642 17 O -0.392 6.392 18 C -0.171 4.171 19 C -0.053 4.053 20 C -0.208 4.208 21 C -0.015 4.015 22 N -0.217 5.217 23 C 0.179 3.821 24 N -0.108 5.108 25 C -0.068 4.068 26 C -0.287 4.287 27 C -0.128 4.128 28 N -0.068 5.068 29 C -0.025 4.025 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.167 0.833 40 H 0.188 0.812 41 H 0.195 0.805 42 H 0.173 0.827 43 H 0.208 0.792 44 H 0.080 0.920 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.000 -23.231 -4.206 25.639 hybrid contribution 0.368 1.112 -0.111 1.176 sum 10.368 -22.119 -4.317 24.807 Atomic orbital electron populations 1.69651 1.05114 1.25879 1.57383 1.24733 0.95497 0.97711 1.02623 0.86275 0.78572 0.83423 0.77993 1.21102 1.21654 1.21221 1.19219 0.91047 0.83998 1.43146 0.91144 1.42361 1.05803 0.99549 1.88060 1.20505 0.94866 0.86463 0.92456 0.93227 1.21821 0.98773 0.93990 1.01831 1.21899 1.00855 0.98396 0.95638 1.21788 0.97105 0.89154 0.93830 1.48049 1.18348 1.10961 1.55465 1.17567 0.81321 0.86194 0.79135 1.90804 1.64591 1.43554 1.40262 1.20679 1.05468 0.97793 0.93162 1.21782 0.92900 0.93997 0.96630 1.22117 1.01587 0.96446 1.00625 1.22703 0.94114 0.98798 0.85924 1.66992 1.16167 1.08561 1.30029 1.17468 0.93599 0.88717 0.82295 1.45606 1.24702 1.34916 1.05533 1.22790 0.98391 1.00382 0.85281 1.21629 1.01370 1.04953 1.00776 1.24166 0.98037 0.99067 0.91528 1.77696 1.06981 1.06489 1.15684 1.22766 0.97860 0.81128 1.00733 0.93408 0.78045 0.91356 0.91971 0.91721 0.90954 0.90765 0.91417 0.83158 0.83299 0.81240 0.80478 0.82716 0.79181 0.92045 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.83 29.55 -169.99 -5.02 17.80 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.83 9.93 -15.06 -0.15 -6.98 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.72 -17.91 5.12 -53.31 -0.27 -18.18 16 10 C 0.17 3.35 2.92 -67.81 -0.20 3.15 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -1.96 5.35 -26.69 -0.14 -2.10 16 13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 14 C 0.10 1.30 5.94 -3.71 -0.02 1.28 16 15 N -0.59 -9.75 2.97 -173.98 -0.52 -10.27 16 16 C 0.57 10.08 5.61 -12.45 -0.07 10.01 16 17 O -0.52 -11.25 14.98 5.29 0.08 -11.17 16 18 C -0.16 -2.29 4.75 -104.67 -0.50 -2.79 16 19 C -0.03 -0.26 7.70 -38.89 -0.30 -0.56 16 20 C -0.19 -1.30 10.09 -39.48 -0.40 -1.70 16 21 C 0.14 1.10 11.17 -17.49 -0.20 0.91 16 22 N -0.50 -5.77 10.00 -12.03 -0.12 -5.89 16 23 C 0.41 5.76 7.41 -154.37 -1.14 4.62 16 24 N -0.33 -5.01 3.56 -11.89 -0.04 -5.05 16 25 C 0.07 0.88 11.20 -16.81 -0.19 0.69 16 26 C -0.26 -2.93 10.80 -39.99 -0.43 -3.36 16 27 C 0.06 0.84 12.02 -17.33 -0.21 0.63 16 28 N -0.25 -4.21 9.37 30.64 0.29 -3.92 16 29 C 0.10 1.95 6.00 -3.71 -0.02 1.93 16 30 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.78 4.87 -51.93 -0.25 0.53 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.15 1.27 7.85 -52.48 -0.41 0.86 16 39 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 40 H 0.17 0.65 8.06 -52.49 -0.42 0.23 16 41 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 42 H 0.16 1.24 8.06 -52.49 -0.42 0.82 16 43 H 0.19 2.00 8.06 -52.49 -0.42 1.57 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 2.08 7.04 -51.93 -0.37 1.71 16 LS Contribution 373.33 15.07 5.63 5.63 Total: -1.00 -36.48 373.33 -9.45 -45.93 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.96 Total: 8.85 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -4.22 Total: 3.70 kcal Atomic # 7 Polarization: -70.79 SS G_CDS: 0.06 Total: -70.74 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.48 -9.45 -45.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999859541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.935 kcal (2) G-P(sol) polarization free energy of solvation -36.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds