Wall clock time and date at job start Sat Apr 11 2020 06:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99534 * 2 1 4 4 H 1.48512 * 109.47012 * 240.27601 * 3 2 1 5 5 H 1.48495 * 109.47562 * 0.27847 * 3 2 1 6 6 H 1.48502 * 109.46860 * 120.28255 * 3 2 1 7 7 C 1.38810 * 120.00353 * 180.28001 * 2 1 3 8 8 H 1.08003 * 120.00234 * 179.72098 * 7 2 1 9 9 N 1.36937 * 119.99638 * 359.71949 * 7 2 1 10 10 C 1.46503 * 119.99787 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49916 * 34.93757 * 10 9 7 12 12 C 1.53039 * 109.49886 * 155.00153 * 10 9 7 13 13 C 1.53042 * 109.54133 * 181.31770 * 12 10 9 14 14 C 1.53190 * 109.31213 * 298.63504 * 13 12 10 15 15 N 1.46927 * 108.77321 * 54.63627 * 14 13 12 16 16 C 1.34776 * 120.63156 * 126.41827 * 15 14 13 17 17 O 1.21589 * 120.00201 * 174.57283 * 16 15 14 18 18 C 1.47589 * 119.99906 * 354.56821 * 16 15 14 19 19 C 1.39979 * 120.59605 * 305.12467 * 18 16 15 20 20 C 1.38351 * 118.34737 * 180.02562 * 19 18 16 21 21 C 1.38387 * 119.45284 * 359.97438 * 20 19 18 22 22 N 1.31840 * 121.18369 * 359.97438 * 21 20 19 23 23 C 1.32255 * 121.80227 * 359.74881 * 22 21 20 24 24 N 1.39358 * 119.79630 * 180.26426 * 23 22 21 25 25 C 1.35933 * 126.11001 * 333.81306 * 24 23 22 26 26 C 1.35230 * 107.60364 * 179.97438 * 25 24 23 27 27 C 1.40011 * 107.97222 * 0.02562 * 26 25 24 28 28 N 1.30781 * 108.37982 * 359.75657 * 27 26 25 29 29 C 1.46929 * 118.73652 * 306.38668 * 15 14 13 30 30 H 0.97000 * 119.99920 * 359.71949 * 1 2 3 31 31 H 0.96996 * 120.00391 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.45866 * 301.33916 * 12 10 9 33 33 H 1.09000 * 109.45779 * 61.30787 * 12 10 9 34 34 H 1.09002 * 109.49086 * 58.58751 * 13 12 10 35 35 H 1.08995 * 109.49958 * 178.68190 * 13 12 10 36 36 H 1.08995 * 109.58580 * 174.41678 * 14 13 12 37 37 H 1.08999 * 109.58289 * 294.70554 * 14 13 12 38 38 H 1.08005 * 120.82443 * 359.97438 * 19 18 16 39 39 H 1.07996 * 120.26735 * 179.97438 * 20 19 18 40 40 H 1.08002 * 119.40459 * 179.97438 * 21 20 19 41 41 H 1.08001 * 126.19981 * 359.97438 * 25 24 23 42 42 H 1.08001 * 126.01428 * 179.97438 * 26 25 24 43 43 H 1.08000 * 125.80588 * 180.02562 * 27 26 25 44 44 H 1.09000 * 109.58770 * 293.82254 * 29 15 14 45 45 H 1.09007 * 109.58554 * 173.39995 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6995 -1.2160 5 1 1.2851 2.7465 0.0068 6 1 3.1090 1.6935 1.2091 7 6 2.0103 -1.2021 -0.0059 8 1 3.0904 -1.2020 -0.0104 9 7 1.3257 -2.3880 -0.0059 10 6 2.0582 -3.6567 -0.0126 11 1 2.9723 -3.5522 0.5718 12 6 1.1842 -4.7545 0.5981 13 6 1.9606 -6.0732 0.6216 14 6 2.3140 -6.4786 -0.8127 15 7 3.0301 -5.3681 -1.4552 16 6 4.2301 -5.5688 -2.0350 17 8 4.7673 -4.6669 -2.6485 18 6 4.8921 -6.8833 -1.9251 19 6 5.1271 -7.4601 -0.6715 20 6 5.7515 -8.6937 -0.6227 21 6 6.1217 -9.3162 -1.8020 22 7 5.8896 -8.7550 -2.9721 23 6 5.2914 -7.5800 -3.0752 24 7 5.0619 -7.0278 -4.3340 25 6 5.7817 -7.2746 -5.4604 26 6 5.2372 -6.5463 -6.4614 27 6 4.1538 -5.8320 -5.9360 28 7 4.0451 -6.1228 -4.6656 29 6 2.4128 -4.0348 -1.4541 30 1 -0.4850 0.8400 0.0041 31 1 0.3557 -2.3881 -0.0021 32 1 0.9101 -4.4763 1.6158 33 1 0.2816 -4.8753 -0.0009 34 1 2.8758 -5.9461 1.1999 35 1 1.3461 -6.8491 1.0781 36 1 2.9509 -7.3630 -0.7960 37 1 1.4007 -6.6963 -1.3664 38 1 4.8291 -6.9543 0.2350 39 1 5.9484 -9.1670 0.3279 40 1 6.6095 -10.2790 -1.7629 41 1 6.6339 -7.9330 -5.5413 42 1 5.5787 -6.5198 -7.4856 43 1 3.5137 -5.1590 -6.4872 44 1 1.5074 -4.0508 -2.0610 45 1 3.1148 -3.3068 -1.8607 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999859541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:47 Heat of formation + Delta-G solvation = 93.251357 kcal Electronic energy + Delta-G solvation = -29998.657555 eV Core-core repulsion = 26018.081644 eV Total energy + Delta-G solvation = -3980.575911 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.71378 -41.48978 -40.41508 -38.61564 -36.27585 -34.76696 -34.25242 -33.42986 -32.76145 -31.40469 -30.68880 -29.87847 -27.04146 -25.91544 -25.15386 -25.04859 -23.28179 -22.47767 -21.99409 -21.63951 -20.41224 -19.41489 -19.15394 -18.50458 -17.88032 -17.16384 -16.68809 -16.56260 -16.29527 -15.87680 -15.69533 -15.58503 -15.47752 -15.14229 -15.12928 -14.69290 -14.50371 -14.30776 -14.08344 -13.83870 -13.74394 -13.70406 -13.47110 -13.12031 -12.90793 -12.54116 -12.28302 -12.10222 -11.93288 -11.82858 -11.73608 -11.45571 -11.37042 -11.30717 -11.09197 -10.96634 -10.62965 -10.22528 -9.74962 -9.39549 -9.03372 -8.00285 -5.29698 -0.55054 -0.12024 1.02636 1.14392 1.42138 1.45489 1.51488 1.62503 1.81059 1.93095 2.51695 2.57857 3.17364 3.31874 3.33069 3.51332 3.71644 3.82737 3.91123 3.96136 3.98791 4.01533 4.12519 4.17266 4.30509 4.34145 4.41306 4.51627 4.54190 4.66925 4.70953 4.83857 4.84835 4.88573 4.97439 4.98498 5.04478 5.10762 5.35755 5.37314 5.40935 5.43592 5.55271 5.56515 6.03782 6.22204 6.35249 6.40840 6.75840 7.13665 7.28802 8.00808 8.26094 9.22242 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013050 B = 0.003344 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.044542 B = 8369.947745 C = 9600.472203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.169 3.831 11 H 0.038 0.962 12 C -0.118 4.118 13 C -0.116 4.116 14 C 0.102 3.898 15 N -0.594 5.594 16 C 0.571 3.429 17 O -0.574 6.574 18 C -0.192 4.192 19 C -0.029 4.029 20 C -0.159 4.159 21 C 0.150 3.850 22 N -0.515 5.515 23 C 0.379 3.621 24 N -0.343 5.343 25 C 0.063 3.937 26 C -0.255 4.255 27 C 0.046 3.954 28 N -0.307 5.307 29 C 0.118 3.882 30 H 0.253 0.747 31 H 0.377 0.623 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.165 0.835 39 H 0.199 0.801 40 H 0.217 0.783 41 H 0.204 0.796 42 H 0.188 0.812 43 H 0.207 0.793 44 H 0.047 0.953 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.668 -27.467 -2.675 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.056 0.944 12 C -0.156 4.156 13 C -0.155 4.155 14 C -0.020 4.020 15 N -0.326 5.326 16 C 0.359 3.641 17 O -0.453 6.453 18 C -0.200 4.200 19 C -0.055 4.055 20 C -0.179 4.179 21 C -0.008 4.008 22 N -0.228 5.228 23 C 0.152 3.848 24 N -0.122 5.122 25 C -0.077 4.077 26 C -0.283 4.283 27 C -0.143 4.143 28 N -0.125 5.125 29 C -0.008 4.008 30 H 0.062 0.938 31 H 0.210 0.790 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.087 0.913 38 H 0.183 0.817 39 H 0.216 0.784 40 H 0.233 0.767 41 H 0.221 0.779 42 H 0.205 0.795 43 H 0.223 0.777 44 H 0.066 0.934 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.680 -27.095 -2.619 29.621 hybrid contribution -0.051 2.111 -0.593 2.194 sum 11.629 -24.984 -3.212 27.744 Atomic orbital electron populations 1.69784 1.06328 1.26285 1.58953 1.25473 0.96372 1.00765 1.03261 0.85313 0.77411 0.79623 0.78042 1.21248 1.21428 1.20112 1.19477 0.91015 0.85502 1.41919 0.91744 1.42506 1.05519 1.00612 1.88210 1.20658 0.94896 0.86108 0.92374 0.94438 1.21735 0.98338 0.94443 1.01102 1.21883 1.01458 0.96867 0.95275 1.22072 0.97302 0.88594 0.93996 1.48043 1.18442 1.10422 1.55731 1.18190 0.81028 0.87221 0.77677 1.90751 1.66068 1.45891 1.42638 1.20466 1.07777 0.96521 0.95280 1.22063 0.93077 0.95151 0.95238 1.22632 0.98327 0.94485 1.02433 1.23657 0.92300 0.99826 0.85058 1.67109 1.16194 1.07477 1.32018 1.17727 0.95090 0.89968 0.81968 1.45811 1.24728 1.34925 1.06688 1.23366 0.98835 1.00715 0.84799 1.22016 1.00275 1.03842 1.02148 1.24646 0.99064 0.99377 0.91176 1.77583 1.09131 1.08447 1.17296 1.22159 0.96102 0.82597 0.99951 0.93773 0.79031 0.91337 0.92055 0.90535 0.86802 0.87989 0.91275 0.81730 0.78418 0.76690 0.77914 0.79479 0.77679 0.93419 0.93810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.82 13.06 21.65 0.28 -59.54 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.97 48.11 29.55 68.60 2.03 50.14 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 5 H -0.29 -14.14 7.11 99.48 0.71 -13.44 16 6 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 7 C -0.25 -14.43 9.93 84.03 0.83 -13.60 16 8 H 0.06 3.76 7.83 -2.91 -0.02 3.73 16 9 N -0.73 -37.98 5.12 -322.58 -1.65 -39.64 16 10 C 0.17 6.99 2.92 45.07 0.13 7.12 16 11 H 0.04 1.63 8.08 -2.39 -0.02 1.61 16 12 C -0.12 -3.58 5.35 30.62 0.16 -3.41 16 13 C -0.12 -2.36 6.08 30.67 0.19 -2.17 16 14 C 0.10 2.37 5.94 86.36 0.51 2.88 16 15 N -0.59 -20.10 2.97 -822.60 -2.44 -22.55 16 16 C 0.57 21.02 5.61 86.71 0.49 21.50 16 17 O -0.57 -27.04 14.98 -4.00 -0.06 -27.10 16 18 C -0.19 -5.30 4.75 -19.89 -0.09 -5.39 16 19 C -0.03 -0.48 7.70 22.72 0.17 -0.31 16 20 C -0.16 -1.33 10.09 22.33 0.23 -1.10 16 21 C 0.15 1.57 11.17 84.73 0.95 2.51 16 22 N -0.51 -10.47 10.00 -191.97 -1.92 -12.39 16 23 C 0.38 10.52 7.41 133.26 0.99 11.51 16 24 N -0.34 -10.69 3.56 -191.54 -0.68 -11.37 16 25 C 0.06 1.54 11.20 83.36 0.93 2.47 16 26 C -0.26 -5.77 10.80 22.01 0.24 -5.53 16 27 C 0.05 1.32 12.02 85.28 1.02 2.34 16 28 N -0.31 -10.93 9.37 -56.96 -0.53 -11.46 16 29 C 0.12 4.96 6.00 86.36 0.52 5.48 16 30 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.38 20.64 7.80 -92.71 -0.72 19.92 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.86 4.87 -2.39 -0.01 1.84 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.17 2.17 7.85 -2.91 -0.02 2.15 16 39 H 0.20 -0.21 8.06 -2.91 -0.02 -0.23 16 40 H 0.22 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.19 2.74 8.06 -2.91 -0.02 2.71 16 43 H 0.21 4.70 8.06 -2.91 -0.02 4.67 16 44 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.04 2.22 7.04 -2.38 -0.02 2.21 16 Total: -1.00 -88.07 373.33 3.05 -85.02 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.30 Total: 28.02 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.74 Total: 20.87 kcal Atomic # 7 Polarization: -149.99 SS G_CDS: -6.95 Total: -156.94 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.06 Total: -27.10 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -88.07 3.05 -85.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999859541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.270 kcal (2) G-P(sol) polarization free energy of solvation -88.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds