Wall clock time and date at job start Sat Apr 11 2020 06:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48505 * 109.47260 * 5.53467 * 3 2 1 5 5 H 1.48503 * 109.47295 * 125.53334 * 3 2 1 6 6 H 1.48502 * 109.47311 * 245.53323 * 3 2 1 7 7 C 1.38811 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99506 * 344.74943 * 7 2 1 9 9 N 1.36934 * 120.00358 * 164.74868 * 7 2 1 10 10 C 1.47021 * 125.64585 * 350.02349 * 9 7 2 11 11 C 1.54322 * 107.26798 * 181.01760 * 10 9 7 12 12 C 1.55147 * 102.94624 * 22.19378 * 11 10 9 13 13 H 1.08997 * 111.00854 * 206.42064 * 12 11 10 14 14 N 1.46504 * 111.00493 * 82.60413 * 12 11 10 15 15 C 1.35307 * 125.87126 * 274.71907 * 14 12 11 16 16 C 1.35359 * 106.17570 * 179.90588 * 15 14 12 17 17 C 1.50698 * 126.74822 * 180.12555 * 16 15 14 18 18 N 1.46509 * 109.46934 * 95.29607 * 17 16 15 19 19 C 1.34771 * 119.99796 * 179.97438 * 18 17 16 20 20 O 1.21560 * 120.00452 * 0.02562 * 19 18 17 21 21 C 1.47849 * 119.99840 * 179.97438 * 19 18 17 22 22 C 1.39574 * 120.14375 * 359.72716 * 21 19 18 23 23 C 1.37955 * 119.85021 * 179.79180 * 22 21 19 24 24 C 1.38364 * 120.14672 * 0.48205 * 23 22 21 25 25 C 1.38355 * 120.29172 * 359.74761 * 24 23 22 26 26 C 1.37960 * 120.14598 * 0.02562 * 25 24 23 27 27 N 1.33770 * 106.49356 * 0.35221 * 16 15 14 28 28 N 1.28632 * 108.88613 * 359.77257 * 27 16 15 29 29 C 1.47424 * 125.65014 * 169.70769 * 9 7 2 30 30 H 0.97005 * 119.99705 * 174.97700 * 1 2 3 31 31 H 1.08998 * 109.88354 * 300.43476 * 10 9 7 32 32 H 1.09001 * 109.88433 * 61.44904 * 10 9 7 33 33 H 1.09005 * 110.71735 * 140.56045 * 11 10 9 34 34 H 1.09003 * 110.72099 * 263.82669 * 11 10 9 35 35 H 1.07997 * 126.90991 * 0.02562 * 15 14 12 36 36 H 1.09005 * 109.46908 * 215.29181 * 17 16 15 37 37 H 1.08995 * 109.47552 * 335.29459 * 17 16 15 38 38 H 0.96997 * 119.99818 * 359.97438 * 18 17 16 39 39 H 1.07996 * 120.07256 * 359.97438 * 22 21 19 40 40 H 1.08002 * 119.92989 * 180.22728 * 23 22 21 41 41 H 1.08002 * 119.85146 * 179.72110 * 24 23 22 42 42 H 1.07996 * 119.92956 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.07592 * 179.97438 * 26 25 24 44 44 H 1.08995 * 110.37194 * 274.75657 * 29 9 7 45 45 H 1.09003 * 110.36376 * 37.07749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2909 2.7432 0.1350 5 1 3.2024 1.6396 1.1394 6 1 2.9999 1.7565 -1.2744 7 6 2.0104 -1.2021 -0.0005 8 1 1.4988 -2.1211 0.2451 9 7 3.3435 -1.2229 -0.3125 10 6 4.1126 -0.0966 -0.8616 11 6 5.5590 -0.5905 -1.0754 12 6 5.3907 -2.1302 -1.1658 13 1 6.3025 -2.6417 -0.8576 14 7 4.9947 -2.5368 -2.5164 15 6 3.7295 -2.5720 -2.9949 16 6 3.8225 -3.0006 -4.2754 17 6 2.6850 -3.2054 -5.2425 18 7 2.5273 -2.0078 -6.0716 19 6 1.5651 -1.9627 -7.0142 20 8 0.8278 -2.9154 -7.1762 21 6 1.4056 -0.7539 -7.8505 22 6 2.2462 0.3444 -7.6625 23 6 2.0948 1.4675 -8.4491 24 6 1.1060 1.5106 -9.4159 25 6 0.2664 0.4272 -9.6042 26 6 0.4100 -0.7039 -8.8275 27 7 5.1221 -3.2114 -4.5120 28 7 5.7900 -2.9273 -3.4500 29 6 4.2468 -2.3762 -0.1472 30 1 -0.4850 -0.8369 -0.0736 31 1 3.6833 0.2164 -1.8134 32 1 4.1030 0.7365 -0.1589 33 1 5.9693 -0.1922 -2.0034 34 1 6.1881 -0.3204 -0.2272 35 1 2.8273 -2.3090 -2.4628 36 1 2.9001 -4.0629 -5.8801 37 1 1.7645 -3.3869 -4.6877 38 1 3.1155 -1.2474 -5.9421 39 1 3.0153 0.3138 -6.9049 40 1 2.7470 2.3167 -8.3072 41 1 0.9888 2.3940 -10.0261 42 1 -0.5038 0.4673 -10.3602 43 1 -0.2463 -1.5488 -8.9751 44 1 4.6404 -2.4073 0.8687 45 1 3.7242 -3.3038 -0.3810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999951048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:59 Heat of formation + Delta-G solvation = 132.704998 kcal Electronic energy + Delta-G solvation = -29269.537137 eV Core-core repulsion = 25290.672064 eV Total energy + Delta-G solvation = -3978.865073 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.14035 -40.19526 -38.46110 -38.27362 -35.25354 -33.84311 -32.31211 -31.81935 -31.12905 -30.71965 -29.91847 -28.69103 -26.79558 -24.48715 -23.70793 -22.92773 -22.64206 -21.42795 -20.96057 -20.51905 -20.19752 -18.40433 -17.84321 -16.96306 -16.49734 -16.18190 -15.87519 -15.54816 -15.26015 -15.04500 -14.64111 -14.58071 -14.44115 -13.83360 -13.78953 -13.61251 -13.30471 -13.21439 -13.07895 -12.83364 -12.48829 -12.21757 -11.86585 -11.73238 -11.61333 -11.51170 -11.36708 -11.28984 -11.14809 -10.68397 -10.31022 -10.13988 -9.85353 -9.58295 -9.26635 -9.20312 -9.19310 -9.06450 -8.99135 -8.93815 -7.34642 -6.51670 -3.48594 0.69682 1.16595 1.79535 2.40627 2.51297 2.81443 3.23070 3.32395 3.38657 3.54524 3.74395 4.27871 4.42521 4.45151 4.57558 4.58913 4.62779 4.72866 4.74143 4.93557 4.94115 5.03624 5.16327 5.24731 5.28323 5.34439 5.42026 5.46474 5.57369 5.65112 5.75782 5.77321 5.79503 5.88891 6.03118 6.08958 6.11429 6.16448 6.19079 6.22819 6.25644 6.33697 6.39156 6.67184 6.87466 7.33774 7.45611 8.10823 8.16131 8.67558 8.79373 9.28312 9.92459 10.98094 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.003585 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.825131 B = 7808.733511 C = 9213.297953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 1.066 2.934 4 H -0.299 1.299 5 H -0.296 1.296 6 H -0.287 1.287 7 C -0.337 4.337 8 H 0.083 0.917 9 N -0.610 5.610 10 C 0.104 3.896 11 C -0.136 4.136 12 C 0.120 3.880 13 H 0.121 0.879 14 N -0.273 5.273 15 C 0.013 3.987 16 C -0.071 4.071 17 C 0.216 3.784 18 N -0.716 5.716 19 C 0.560 3.440 20 O -0.538 6.538 21 C -0.131 4.131 22 C -0.084 4.084 23 C -0.127 4.127 24 C -0.097 4.097 25 C -0.130 4.130 26 C -0.060 4.060 27 N -0.260 5.260 28 N -0.097 5.097 29 C 0.127 3.873 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.205 0.795 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.402 0.598 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.136 0.864 44 H 0.056 0.944 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.897 1.277 -12.713 15.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.212 4.212 3 Si 0.900 3.100 4 H -0.227 1.227 5 H -0.225 1.225 6 H -0.215 1.215 7 C -0.463 4.463 8 H 0.101 0.899 9 N -0.339 5.339 10 C -0.020 4.020 11 C -0.175 4.175 12 C 0.018 3.982 13 H 0.139 0.861 14 N -0.065 5.065 15 C -0.140 4.140 16 C -0.209 4.209 17 C 0.091 3.909 18 N -0.368 5.368 19 C 0.347 3.653 20 O -0.417 6.417 21 C -0.134 4.134 22 C -0.103 4.103 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.148 4.148 26 C -0.079 4.079 27 N -0.128 5.128 28 N -0.076 5.076 29 C 0.000 4.000 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.222 0.778 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.237 0.763 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.154 0.846 44 H 0.074 0.926 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.551 1.920 -13.066 15.733 hybrid contribution -0.405 -0.912 0.751 1.249 sum 8.146 1.007 -12.315 14.800 Atomic orbital electron populations 1.70895 1.05724 1.29615 1.49444 1.25812 0.96398 1.00806 0.98212 0.83908 0.73402 0.76560 0.76165 1.22719 1.22516 1.21475 1.20126 0.81301 0.96439 1.48427 0.89948 1.44956 1.06324 1.07424 1.75173 1.22106 0.89819 0.92237 0.97876 1.23043 0.98834 0.92400 1.03220 1.23052 1.00816 0.97320 0.77058 0.86102 1.47298 1.05367 1.41540 1.12273 1.23969 0.91296 1.03102 0.95599 1.21738 0.93850 1.10329 0.94999 1.19294 0.93685 0.87703 0.90172 1.45924 1.35263 1.19151 1.36511 1.18233 0.80140 0.87104 0.79789 1.90772 1.44286 1.37312 1.69287 1.19963 0.99353 0.94710 0.99359 1.21361 0.97838 0.92746 0.98349 1.21125 0.98969 0.98185 0.96256 1.21378 0.94563 0.98342 0.97208 1.21165 1.00029 0.93427 1.00160 1.21303 0.95650 0.98226 0.92722 1.74984 1.03272 1.17028 1.17492 1.78228 1.19611 1.16975 0.92747 1.21990 0.89606 0.93390 0.95022 0.92463 0.93261 0.94446 0.90254 0.88718 0.77788 0.89656 0.89305 0.76308 0.85651 0.85365 0.85616 0.85328 0.84569 0.92641 0.92262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 13.70 55.49 0.76 -26.13 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 1.07 24.61 24.53 -169.99 -4.17 20.44 16 4 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.30 -6.58 6.84 56.52 0.39 -6.19 16 6 H -0.29 -6.02 5.41 56.52 0.31 -5.72 16 7 C -0.34 -8.47 10.35 -15.06 -0.16 -8.63 16 8 H 0.08 2.21 8.06 -52.48 -0.42 1.79 16 9 N -0.61 -12.54 2.17 -169.94 -0.37 -12.91 16 10 C 0.10 1.94 4.25 -3.07 -0.01 1.93 16 11 C -0.14 -1.89 6.64 -24.90 -0.17 -2.06 16 12 C 0.12 1.67 4.19 -65.67 -0.28 1.39 16 13 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 14 N -0.27 -4.29 3.40 -52.57 -0.18 -4.47 16 15 C 0.01 0.22 9.97 -17.05 -0.17 0.05 16 16 C -0.07 -1.12 6.62 -82.78 -0.55 -1.67 16 17 C 0.22 3.12 6.23 -5.19 -0.03 3.09 16 18 N -0.72 -9.87 5.50 -62.42 -0.34 -10.22 16 19 C 0.56 8.34 7.77 -12.33 -0.10 8.25 16 20 O -0.54 -9.57 16.35 5.31 0.09 -9.48 16 21 C -0.13 -1.67 5.87 -104.97 -0.62 -2.28 16 22 C -0.08 -0.91 9.54 -39.19 -0.37 -1.29 16 23 C -0.13 -1.18 10.03 -39.64 -0.40 -1.58 16 24 C -0.10 -0.83 10.04 -39.49 -0.40 -1.23 16 25 C -0.13 -1.21 10.03 -39.64 -0.40 -1.60 16 26 C -0.06 -0.70 9.60 -39.18 -0.38 -1.07 16 27 N -0.26 -4.39 12.41 33.29 0.41 -3.98 16 28 N -0.10 -1.61 13.16 60.35 0.79 -0.81 16 29 C 0.13 2.06 6.23 -2.41 -0.02 2.05 16 30 H 0.27 7.71 8.73 -40.82 -0.36 7.35 16 31 H 0.05 0.99 6.73 -51.93 -0.35 0.64 16 32 H 0.04 0.75 3.87 -51.93 -0.20 0.55 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.21 3.75 6.82 -52.49 -0.36 3.39 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.40 4.99 6.50 -40.82 -0.27 4.73 16 39 H 0.13 1.20 6.41 -52.49 -0.34 0.86 16 40 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 41 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 43 H 0.14 1.57 7.65 -52.49 -0.40 1.16 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -31.79 369.11 -7.38 -39.17 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -5.81 Total: 7.88 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -4.12 Total: -5.05 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 1.08 Total: -58.51 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.17 Total: 20.44 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.79 -7.38 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999951048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.871 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds