Wall clock time and date at job start Sat Apr 11 2020 06:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86793 * 119.99971 * 2 1 4 4 H 1.48505 * 109.47260 * 5.53467 * 3 2 1 5 5 H 1.48503 * 109.47295 * 125.53334 * 3 2 1 6 6 H 1.48502 * 109.47311 * 245.53323 * 3 2 1 7 7 C 1.38811 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99506 * 344.74943 * 7 2 1 9 9 N 1.36934 * 120.00358 * 164.74868 * 7 2 1 10 10 C 1.47021 * 125.64585 * 350.02349 * 9 7 2 11 11 C 1.54322 * 107.26798 * 181.01760 * 10 9 7 12 12 C 1.55147 * 102.94624 * 22.19378 * 11 10 9 13 13 H 1.08997 * 111.00854 * 206.42064 * 12 11 10 14 14 N 1.46504 * 111.00493 * 82.60413 * 12 11 10 15 15 C 1.35307 * 125.87126 * 274.71907 * 14 12 11 16 16 C 1.35359 * 106.17570 * 179.90588 * 15 14 12 17 17 C 1.50698 * 126.74822 * 180.12555 * 16 15 14 18 18 N 1.46509 * 109.46934 * 95.29607 * 17 16 15 19 19 C 1.34771 * 119.99796 * 179.97438 * 18 17 16 20 20 O 1.21560 * 120.00452 * 0.02562 * 19 18 17 21 21 C 1.47849 * 119.99840 * 179.97438 * 19 18 17 22 22 C 1.39574 * 120.14375 * 359.72716 * 21 19 18 23 23 C 1.37955 * 119.85021 * 179.79180 * 22 21 19 24 24 C 1.38364 * 120.14672 * 0.48205 * 23 22 21 25 25 C 1.38355 * 120.29172 * 359.74761 * 24 23 22 26 26 C 1.37960 * 120.14598 * 0.02562 * 25 24 23 27 27 N 1.33770 * 106.49356 * 0.35221 * 16 15 14 28 28 N 1.28632 * 108.88613 * 359.77257 * 27 16 15 29 29 C 1.47424 * 125.65014 * 169.70769 * 9 7 2 30 30 H 0.97005 * 119.99705 * 174.97700 * 1 2 3 31 31 H 1.08998 * 109.88354 * 300.43476 * 10 9 7 32 32 H 1.09001 * 109.88433 * 61.44904 * 10 9 7 33 33 H 1.09005 * 110.71735 * 140.56045 * 11 10 9 34 34 H 1.09003 * 110.72099 * 263.82669 * 11 10 9 35 35 H 1.07997 * 126.90991 * 0.02562 * 15 14 12 36 36 H 1.09005 * 109.46908 * 215.29181 * 17 16 15 37 37 H 1.08995 * 109.47552 * 335.29459 * 17 16 15 38 38 H 0.96997 * 119.99818 * 359.97438 * 18 17 16 39 39 H 1.07996 * 120.07256 * 359.97438 * 22 21 19 40 40 H 1.08002 * 119.92989 * 180.22728 * 23 22 21 41 41 H 1.08002 * 119.85146 * 179.72110 * 24 23 22 42 42 H 1.07996 * 119.92956 * 179.97438 * 25 24 23 43 43 H 1.07997 * 120.07592 * 179.97438 * 26 25 24 44 44 H 1.08995 * 110.37194 * 274.75657 * 29 9 7 45 45 H 1.09003 * 110.36376 * 37.07749 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2909 2.7432 0.1350 5 1 3.2024 1.6396 1.1394 6 1 2.9999 1.7565 -1.2744 7 6 2.0104 -1.2021 -0.0005 8 1 1.4988 -2.1211 0.2451 9 7 3.3435 -1.2229 -0.3125 10 6 4.1126 -0.0966 -0.8616 11 6 5.5590 -0.5905 -1.0754 12 6 5.3907 -2.1302 -1.1658 13 1 6.3025 -2.6417 -0.8576 14 7 4.9947 -2.5368 -2.5164 15 6 3.7295 -2.5720 -2.9949 16 6 3.8225 -3.0006 -4.2754 17 6 2.6850 -3.2054 -5.2425 18 7 2.5273 -2.0078 -6.0716 19 6 1.5651 -1.9627 -7.0142 20 8 0.8278 -2.9154 -7.1762 21 6 1.4056 -0.7539 -7.8505 22 6 2.2462 0.3444 -7.6625 23 6 2.0948 1.4675 -8.4491 24 6 1.1060 1.5106 -9.4159 25 6 0.2664 0.4272 -9.6042 26 6 0.4100 -0.7039 -8.8275 27 7 5.1221 -3.2114 -4.5120 28 7 5.7900 -2.9273 -3.4500 29 6 4.2468 -2.3762 -0.1472 30 1 -0.4850 -0.8369 -0.0736 31 1 3.6833 0.2164 -1.8134 32 1 4.1030 0.7365 -0.1589 33 1 5.9693 -0.1922 -2.0034 34 1 6.1881 -0.3204 -0.2272 35 1 2.8273 -2.3090 -2.4628 36 1 2.9001 -4.0629 -5.8801 37 1 1.7645 -3.3869 -4.6877 38 1 3.1155 -1.2474 -5.9421 39 1 3.0153 0.3138 -6.9049 40 1 2.7470 2.3167 -8.3072 41 1 0.9888 2.3940 -10.0261 42 1 -0.5038 0.4673 -10.3602 43 1 -0.2463 -1.5488 -8.9751 44 1 4.6404 -2.4073 0.8687 45 1 3.7242 -3.3038 -0.3810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999951048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:58 Heat of formation + Delta-G solvation = 111.184010 kcal Electronic energy + Delta-G solvation = -29270.470357 eV Core-core repulsion = 25290.672064 eV Total energy + Delta-G solvation = -3979.798293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.43283 -41.23786 -39.79632 -39.24882 -36.51708 -35.40639 -33.95056 -32.95249 -31.93776 -31.77468 -31.42114 -30.04868 -28.00226 -26.15668 -24.66327 -24.26880 -23.44705 -22.85404 -22.37909 -21.58893 -21.47612 -19.72761 -19.35624 -18.24461 -17.68859 -17.33574 -17.11007 -16.79653 -16.47270 -16.11767 -15.92753 -15.75359 -15.51231 -15.42511 -15.06734 -14.75165 -14.60495 -14.32372 -14.22624 -14.04130 -13.66823 -13.48395 -13.24619 -13.01753 -12.94313 -12.83335 -12.63121 -12.48938 -12.04570 -12.00438 -11.89599 -11.46438 -11.35428 -11.15766 -11.05212 -10.70668 -10.38049 -10.34962 -9.97279 -9.90956 -9.16458 -8.63718 -5.50209 -0.17006 0.39621 0.48743 1.13571 1.29581 1.38944 1.48911 1.70049 1.78801 2.24238 2.54823 2.88084 3.01531 3.07575 3.19608 3.33202 3.43613 3.61436 3.72715 3.87529 3.89494 4.00118 4.06311 4.15663 4.21636 4.22967 4.39102 4.45019 4.50191 4.54062 4.55456 4.70167 4.76953 4.78467 4.83066 4.83872 4.95867 5.02263 5.03721 5.16014 5.33112 5.42803 5.48661 5.51246 5.62461 5.93335 6.07320 6.34250 6.77764 7.01610 7.36633 7.38574 8.01017 8.88363 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009663 B = 0.003585 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.825131 B = 7808.733511 C = 9213.297953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.071 4.071 3 Si 1.102 2.898 4 H -0.321 1.321 5 H -0.278 1.278 6 H -0.255 1.255 7 C -0.308 4.308 8 H 0.052 0.948 9 N -0.626 5.626 10 C 0.094 3.906 11 C -0.121 4.121 12 C 0.125 3.875 13 H 0.164 0.836 14 N -0.267 5.267 15 C 0.002 3.998 16 C -0.058 4.058 17 C 0.219 3.781 18 N -0.710 5.710 19 C 0.556 3.444 20 O -0.578 6.578 21 C -0.157 4.157 22 C -0.092 4.092 23 C -0.130 4.130 24 C -0.089 4.089 25 C -0.129 4.129 26 C -0.078 4.078 27 N -0.274 5.274 28 N -0.093 5.093 29 C 0.124 3.876 30 H 0.249 0.751 31 H 0.030 0.970 32 H 0.035 0.965 33 H 0.092 0.908 34 H 0.132 0.868 35 H 0.183 0.817 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.409 0.591 39 H 0.133 0.867 40 H 0.155 0.845 41 H 0.160 0.840 42 H 0.155 0.845 43 H 0.126 0.874 44 H 0.081 0.919 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 3.019 -13.520 17.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.931 3.069 4 H -0.251 1.251 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.436 4.436 8 H 0.070 0.930 9 N -0.355 5.355 10 C -0.030 4.030 11 C -0.159 4.159 12 C 0.023 3.977 13 H 0.181 0.819 14 N -0.059 5.059 15 C -0.151 4.151 16 C -0.196 4.196 17 C 0.094 3.906 18 N -0.362 5.362 19 C 0.346 3.654 20 O -0.459 6.459 21 C -0.160 4.160 22 C -0.111 4.111 23 C -0.147 4.147 24 C -0.107 4.107 25 C -0.147 4.147 26 C -0.097 4.097 27 N -0.142 5.142 28 N -0.072 5.072 29 C -0.001 4.001 30 H 0.058 0.942 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.110 0.890 34 H 0.150 0.850 35 H 0.200 0.800 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.151 0.849 40 H 0.173 0.827 41 H 0.178 0.822 42 H 0.172 0.828 43 H 0.144 0.856 44 H 0.099 0.901 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.086 3.640 -13.871 18.754 hybrid contribution -1.463 -1.546 0.978 2.343 sum 10.623 2.094 -12.892 16.836 Atomic orbital electron populations 1.70999 1.07254 1.28646 1.53771 1.26939 0.96310 1.04230 0.98996 0.83499 0.72656 0.72421 0.78285 1.25051 1.20496 1.18000 1.19939 0.83702 0.94845 1.45104 0.93019 1.44888 1.05514 1.09773 1.75277 1.22190 0.92594 0.91684 0.96502 1.23055 0.95797 0.91603 1.05470 1.23281 1.00973 0.98084 0.75317 0.81868 1.47479 1.04738 1.40882 1.12813 1.23657 0.91244 1.04390 0.95843 1.21737 0.93760 1.09357 0.94766 1.19223 0.93094 0.88220 0.90111 1.45853 1.35176 1.19097 1.36072 1.18696 0.79498 0.87501 0.79740 1.90736 1.45728 1.38894 1.70518 1.19915 1.01232 0.94571 1.00287 1.21530 0.97724 0.92780 0.99026 1.21504 0.99368 0.98188 0.95675 1.21828 0.93259 0.98950 0.96659 1.21488 1.00636 0.92618 0.99951 1.21411 0.95687 0.99173 0.93451 1.74983 1.03474 1.17783 1.17919 1.78179 1.19487 1.16749 0.92786 1.22167 0.89656 0.91210 0.97111 0.94216 0.95164 0.94750 0.88975 0.85006 0.79959 0.89470 0.90059 0.75444 0.84879 0.82745 0.82246 0.82759 0.85607 0.90119 0.93331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.14 13.70 21.65 0.30 -58.84 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 1.10 49.55 24.53 68.60 1.68 51.23 16 4 H -0.32 -15.47 7.11 99.48 0.71 -14.77 16 5 H -0.28 -11.47 6.84 99.48 0.68 -10.79 16 6 H -0.25 -9.99 5.41 99.48 0.54 -9.45 16 7 C -0.31 -15.82 10.35 84.03 0.87 -14.95 16 8 H 0.05 2.92 8.06 -2.91 -0.02 2.90 16 9 N -0.63 -24.99 2.17 -691.56 -1.50 -26.48 16 10 C 0.09 3.26 4.25 86.73 0.37 3.63 16 11 C -0.12 -2.77 6.64 31.78 0.21 -2.55 16 12 C 0.12 2.95 4.19 46.46 0.19 3.14 16 13 H 0.16 2.64 8.14 -2.39 -0.02 2.62 16 14 N -0.27 -7.72 3.40 -320.23 -1.09 -8.81 16 15 C 0.00 0.07 9.97 83.49 0.83 0.90 16 16 C -0.06 -1.81 6.62 41.60 0.28 -1.53 16 17 C 0.22 6.52 6.23 85.63 0.53 7.05 16 18 N -0.71 -20.15 5.50 -469.69 -2.58 -22.73 16 19 C 0.56 17.38 7.77 86.79 0.67 18.06 16 20 O -0.58 -21.82 16.35 -3.90 -0.06 -21.89 16 21 C -0.16 -4.08 5.87 -20.09 -0.12 -4.20 16 22 C -0.09 -1.91 9.54 22.53 0.21 -1.70 16 23 C -0.13 -2.08 10.03 22.23 0.22 -1.85 16 24 C -0.09 -1.26 10.04 22.33 0.22 -1.04 16 25 C -0.13 -2.17 10.03 22.23 0.22 -1.95 16 26 C -0.08 -1.84 9.60 22.53 0.22 -1.62 16 27 N -0.27 -8.88 12.41 -48.60 -0.60 -9.48 16 28 N -0.09 -2.86 13.16 37.02 0.49 -2.37 16 29 C 0.12 3.73 6.23 86.93 0.54 4.27 16 30 H 0.25 15.43 8.73 -92.70 -0.81 14.62 16 31 H 0.03 1.16 6.73 -2.39 -0.02 1.14 16 32 H 0.04 1.26 3.87 -2.39 -0.01 1.25 16 33 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.18 6.90 6.82 -2.91 -0.02 6.88 16 36 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 38 H 0.41 10.21 6.50 -92.71 -0.60 9.61 16 39 H 0.13 2.42 6.41 -2.91 -0.02 2.40 16 40 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 41 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 42 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 43 H 0.13 3.10 7.65 -2.91 -0.02 3.08 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.05 1.57 7.88 -2.39 -0.02 1.55 16 Total: -1.00 -73.21 369.11 2.78 -70.43 By element: Atomic # 1 Polarization: 26.56 SS G_CDS: 0.20 Total: 26.76 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.95 Total: 2.19 kcal Atomic # 7 Polarization: -123.73 SS G_CDS: -4.99 Total: -128.72 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.06 Total: -21.89 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 1.68 Total: 51.23 kcal Total: -73.21 2.78 -70.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999951048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.610 kcal (2) G-P(sol) polarization free energy of solvation -73.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds