Wall clock time and date at job start Sat Apr 11 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99748 * 2 1 4 4 H 1.48505 * 109.47093 * 270.00131 * 3 2 1 5 5 H 1.48505 * 109.46959 * 29.99928 * 3 2 1 6 6 H 1.48493 * 109.47169 * 150.00367 * 3 2 1 7 7 C 1.38811 * 120.00193 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99952 * 359.97438 * 7 2 1 9 9 N 1.36940 * 119.99832 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99758 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.49803 * 324.92586 * 10 9 7 12 12 C 1.53046 * 109.52110 * 204.85208 * 10 9 7 13 13 C 1.53041 * 109.53375 * 178.66746 * 12 10 9 14 14 C 1.52761 * 109.38960 * 61.23971 * 13 12 10 15 15 N 1.46929 * 109.00156 * 305.58763 * 14 13 12 16 16 C 1.34775 * 120.62624 * 233.57982 * 15 14 13 17 17 O 1.21556 * 120.00232 * 183.51311 * 16 15 14 18 18 C 1.47863 * 120.00028 * 3.50899 * 16 15 14 19 19 C 1.39612 * 120.11356 * 309.43320 * 18 16 15 20 20 C 1.37976 * 119.98666 * 180.25998 * 19 18 16 21 21 C 1.38270 * 120.21520 * 359.41103 * 20 19 18 22 22 C 1.38912 * 120.22442 * 0.60981 * 21 20 19 23 23 N 1.40222 * 119.99264 * 179.70024 * 22 21 20 24 24 C 1.34724 * 126.84426 * 359.97438 * 23 22 21 25 25 N 1.30854 * 108.03547 * 180.02562 * 24 23 22 26 26 C 1.33259 * 109.84139 * 0.02562 * 25 24 23 27 27 N 1.30751 * 108.99948 * 359.71420 * 26 25 24 28 28 C 1.38592 * 120.01283 * 359.67488 * 22 21 20 29 29 C 1.46924 * 118.74397 * 53.31167 * 15 14 13 30 30 H 0.97003 * 120.00535 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99743 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.45835 * 298.67988 * 12 10 9 33 33 H 1.08997 * 109.45905 * 58.64555 * 12 10 9 34 34 H 1.09005 * 109.49163 * 181.31512 * 13 12 10 35 35 H 1.09001 * 109.49639 * 301.37641 * 13 12 10 36 36 H 1.08994 * 109.51050 * 185.70780 * 14 13 12 37 37 H 1.09002 * 109.43102 * 65.41807 * 14 13 12 38 38 H 1.07999 * 120.00629 * 359.97007 * 19 18 16 39 39 H 1.07999 * 119.89479 * 179.70297 * 20 19 18 40 40 H 1.08003 * 119.88466 * 180.31141 * 21 20 19 41 41 H 1.07999 * 125.97781 * 0.02562 * 24 23 22 42 42 H 1.07997 * 125.50010 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.11184 * 179.97438 * 28 22 21 44 44 H 1.08997 * 109.58754 * 66.42513 * 29 15 14 45 45 H 1.08996 * 109.58774 * 186.85636 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4403 0.6999 7 6 2.0102 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2020 0.0000 10 6 4.1122 -2.4707 -0.0011 11 1 3.5656 -3.2069 0.5882 12 6 5.5012 -2.2598 0.6059 13 6 6.2544 -3.5917 0.6353 14 6 6.4236 -4.1103 -0.7916 15 7 5.1048 -4.1765 -1.4361 16 6 4.6766 -5.3194 -2.0078 17 8 3.6117 -5.3443 -2.5933 18 6 5.5024 -6.5431 -1.9228 19 6 6.8528 -6.5026 -2.2747 20 6 7.6196 -7.6473 -2.1996 21 6 7.0581 -8.8337 -1.7649 22 6 5.7152 -8.8841 -1.4130 23 7 5.1492 -10.0914 -0.9789 24 6 5.7753 -11.2776 -0.8518 25 7 4.9026 -12.1521 -0.4207 26 6 3.7161 -11.5667 -0.2619 27 7 3.8178 -10.3039 -0.5854 28 6 4.9348 -7.7414 -1.4905 29 6 4.2593 -2.9750 -1.4402 30 1 -0.4851 0.8400 0.0004 31 1 3.8646 -0.3619 0.0004 32 1 6.0562 -1.5421 0.0018 33 1 5.3994 -1.8776 1.6216 34 1 7.2346 -3.4453 1.0891 35 1 5.6879 -4.3172 1.2192 36 1 6.8686 -5.1049 -0.7670 37 1 7.0694 -3.4323 -1.3496 38 1 7.2961 -5.5767 -2.6100 39 1 8.6629 -7.6154 -2.4767 40 1 7.6644 -9.7253 -1.7034 41 1 6.8153 -11.4724 -1.0681 42 1 2.8169 -12.0551 0.0833 43 1 3.8905 -7.7789 -1.2177 44 1 4.7250 -2.2025 -2.0522 45 1 3.2770 -3.2208 -1.8435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000145372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:09 Heat of formation + Delta-G solvation = 116.520149 kcal Electronic energy + Delta-G solvation = -28912.968614 eV Core-core repulsion = 24933.401713 eV Total energy + Delta-G solvation = -3979.566901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.70324 -40.67964 -39.01797 -37.39944 -34.96062 -34.38571 -32.46848 -32.06129 -31.45310 -31.28779 -30.09527 -28.69363 -25.91670 -24.56547 -24.16018 -23.57429 -22.25186 -21.73413 -21.62812 -20.53153 -19.58057 -18.31343 -17.59130 -17.05254 -16.69485 -16.24823 -16.04494 -15.82952 -15.35179 -15.02706 -14.62291 -14.55559 -14.34547 -14.23974 -13.90162 -13.76649 -13.41352 -13.20019 -12.79581 -12.72996 -12.67507 -12.47965 -12.27315 -11.88137 -11.71456 -11.36398 -11.14441 -10.96420 -10.77388 -10.67803 -10.51509 -10.32167 -10.28796 -9.95823 -9.90532 -9.61016 -9.46323 -9.15599 -8.82817 -8.48752 -7.33479 -5.79307 -3.17326 0.18073 0.62178 1.52196 1.73122 2.50260 2.63312 2.95086 3.31537 3.34288 3.36690 3.42887 3.79966 3.94635 4.20049 4.34793 4.44096 4.55370 4.56112 4.61400 4.75463 4.89818 4.96985 5.00485 5.11405 5.27951 5.33629 5.39802 5.44578 5.56734 5.66089 5.70700 5.74699 5.82015 5.83963 5.90387 5.96018 5.97444 6.02269 6.09061 6.18418 6.32589 6.53410 6.56375 6.66802 6.83656 7.46680 7.57760 7.95872 8.18351 8.39130 9.15978 9.87423 10.05547 11.38597 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002518 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.436945 B =11115.792448 C =12020.871017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.597 5.597 16 C 0.552 3.448 17 O -0.524 6.524 18 C -0.091 4.091 19 C -0.095 4.095 20 C -0.096 4.096 21 C -0.119 4.119 22 C 0.144 3.856 23 N -0.329 5.329 24 C 0.259 3.741 25 N -0.537 5.537 26 C 0.206 3.794 27 N -0.307 5.307 28 C -0.063 4.063 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.136 0.864 41 H 0.223 0.777 42 H 0.224 0.776 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.668 -19.685 -2.135 30.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.330 5.330 16 C 0.339 3.661 17 O -0.400 6.400 18 C -0.095 4.095 19 C -0.114 4.114 20 C -0.115 4.115 21 C -0.140 4.140 22 C 0.052 3.948 23 N -0.114 5.114 24 C -0.036 4.036 25 N -0.263 5.263 26 C -0.096 4.096 27 N -0.132 5.132 28 C -0.084 4.084 29 C -0.032 4.032 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.157 0.843 39 H 0.161 0.839 40 H 0.154 0.846 41 H 0.239 0.761 42 H 0.241 0.759 43 H 0.165 0.835 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 21.241 -19.564 -2.320 28.971 hybrid contribution 0.734 1.269 -0.057 1.468 sum 21.975 -18.294 -2.377 28.692 Atomic orbital electron populations 1.69704 1.05134 1.25903 1.56934 1.24690 0.95226 0.97222 1.01717 0.86557 0.79186 0.85005 0.77793 1.21014 1.21677 1.20307 1.19095 0.80344 0.94885 1.43626 0.89053 1.42717 1.04155 1.01673 1.89821 1.20459 0.91024 0.89583 0.92732 0.92238 1.21870 0.96661 0.96398 1.01879 1.21805 1.00907 0.98180 0.96020 1.21969 0.84481 1.02211 0.93982 1.48171 1.18243 1.11482 1.55134 1.18214 0.85527 0.82787 0.79588 1.90855 1.22519 1.84469 1.42170 1.19915 0.94267 0.94027 1.01300 1.21483 0.92206 0.99438 0.98235 1.20918 1.00529 0.91146 0.98905 1.20928 0.91963 0.99920 1.01182 1.17387 0.92463 0.83408 1.01573 1.47760 1.07870 1.08061 1.47671 1.26195 1.00613 0.80892 0.95915 1.70639 1.00794 1.32587 1.22307 1.26238 0.97406 0.88417 0.97543 1.78283 0.94069 1.19138 1.21681 1.20922 1.00927 0.89300 0.97237 1.22778 0.95653 0.83961 1.00765 0.92957 0.80428 0.92069 0.91259 0.90788 0.91409 0.89428 0.91130 0.84273 0.83949 0.84640 0.76081 0.75932 0.83499 0.91833 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.82 27.74 -169.99 -4.71 17.10 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 7 C -0.25 -7.03 10.41 -15.06 -0.16 -7.19 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.74 -17.10 4.93 -53.31 -0.26 -17.37 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.13 -1.82 5.36 -26.69 -0.14 -1.97 16 13 C -0.13 -1.39 6.06 -26.83 -0.16 -1.55 16 14 C 0.10 0.97 5.34 -3.93 -0.02 0.94 16 15 N -0.60 -8.59 2.98 -174.14 -0.52 -9.11 16 16 C 0.55 8.66 7.24 -12.32 -0.09 8.57 16 17 O -0.52 -10.69 16.47 5.32 0.09 -10.60 16 18 C -0.09 -1.07 5.00 -104.99 -0.52 -1.59 16 19 C -0.09 -0.74 7.36 -39.16 -0.29 -1.02 16 20 C -0.10 -0.52 10.02 -39.67 -0.40 -0.92 16 21 C -0.12 -0.71 9.47 -39.32 -0.37 -1.08 16 22 C 0.14 1.39 6.69 -83.64 -0.56 0.83 16 23 N -0.33 -3.37 3.82 -11.84 -0.05 -3.42 16 24 C 0.26 2.03 11.98 -90.37 -1.08 0.95 16 25 N -0.54 -5.29 11.19 -15.75 -0.18 -5.47 16 26 C 0.21 2.03 13.03 -91.76 -1.20 0.84 16 27 N -0.31 -3.74 12.05 29.30 0.35 -3.38 16 28 C -0.06 -0.77 9.37 -38.99 -0.37 -1.13 16 29 C 0.09 1.65 6.01 -3.71 -0.02 1.63 16 30 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 31 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 0.70 4.56 -51.93 -0.24 0.46 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.14 0.86 7.07 -52.49 -0.37 0.49 16 39 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 40 H 0.14 0.34 6.79 -52.48 -0.36 -0.02 16 41 H 0.22 0.61 7.09 -52.49 -0.37 0.24 16 42 H 0.22 1.37 8.06 -52.49 -0.42 0.95 16 43 H 0.15 2.12 7.73 -52.49 -0.41 1.71 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 2.10 7.02 -51.93 -0.36 1.73 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -37.54 370.98 -10.32 -47.86 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -5.73 Total: 6.93 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -5.67 Total: 0.46 kcal Atomic # 7 Polarization: -67.47 SS G_CDS: 0.13 Total: -67.34 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -37.54 -10.32 -47.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000145372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.382 kcal (2) G-P(sol) polarization free energy of solvation -37.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds