Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48495 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47477 * 300.00699 * 3 2 1 6 6 H 1.48499 * 109.46801 * 60.00345 * 3 2 1 7 7 C 1.38811 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00109 * 359.97438 * 7 2 1 10 10 C 1.46510 * 120.00032 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49475 * 324.93364 * 10 9 7 12 12 C 1.53043 * 109.52219 * 204.85350 * 10 9 7 13 13 C 1.53038 * 109.53237 * 178.66900 * 12 10 9 14 14 C 1.52757 * 109.38874 * 61.24090 * 13 12 10 15 15 N 1.46929 * 109.00751 * 305.58718 * 14 13 12 16 16 C 1.34783 * 120.63020 * 233.58603 * 15 14 13 17 17 O 1.21622 * 119.99575 * 178.78387 * 16 15 14 18 18 C 1.47142 * 119.99985 * 358.50845 * 16 15 14 19 19 C 1.37077 * 127.21299 * 335.21179 * 18 16 15 20 20 N 1.33309 * 106.37521 * 179.97438 * 19 18 16 21 21 N 1.28505 * 109.49954 * 0.02562 * 20 19 18 22 22 N 1.28715 * 110.66820 * 359.71052 * 21 20 19 23 23 C 1.40089 * 126.06217 * 180.31833 * 22 21 20 24 24 C 1.38862 * 120.07224 * 138.84645 * 23 22 21 25 25 C 1.38107 * 119.92710 * 179.74635 * 24 23 22 26 26 C 1.38279 * 120.07523 * 0.54924 * 25 24 23 27 27 C 1.38288 * 120.13372 * 359.70837 * 26 25 24 28 28 C 1.38110 * 120.07234 * 0.02562 * 27 26 25 29 29 C 1.46923 * 118.74066 * 53.30654 * 15 14 13 30 30 H 0.97001 * 119.99800 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00487 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.45968 * 298.67986 * 12 10 9 33 33 H 1.08989 * 109.45995 * 58.64736 * 12 10 9 34 34 H 1.09000 * 109.49585 * 181.32137 * 13 12 10 35 35 H 1.09008 * 109.49657 * 301.37582 * 13 12 10 36 36 H 1.09006 * 109.51334 * 185.70660 * 14 13 12 37 37 H 1.08992 * 109.43224 * 65.41777 * 14 13 12 38 38 H 1.07994 * 126.81516 * 0.02562 * 19 18 16 39 39 H 1.08005 * 120.03014 * 0.02746 * 24 23 22 40 40 H 1.08007 * 119.96491 * 180.25064 * 25 24 23 41 41 H 1.08000 * 119.93554 * 179.71640 * 26 25 24 42 42 H 1.08000 * 119.96293 * 180.02562 * 27 26 25 43 43 H 1.07996 * 120.03677 * 180.02562 * 28 27 26 44 44 H 1.09000 * 109.58464 * 66.42994 * 29 15 14 45 45 H 1.08999 * 109.59317 * 186.85788 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9683 -3.5514 -0.5909 12 6 1.1802 -4.7541 -0.6068 13 6 1.9571 -6.0723 -0.6374 14 6 2.3231 -6.4784 0.7890 15 7 3.0406 -5.3697 1.4331 16 6 4.2452 -5.5704 2.0034 17 8 4.8389 -4.6397 2.5139 18 6 4.8391 -6.9166 2.0138 19 6 4.1779 -8.1150 1.9397 20 7 5.1135 -9.0637 1.9826 21 7 6.2733 -8.5184 2.0766 22 7 6.1721 -7.2354 2.0938 23 6 7.2336 -6.3255 2.1814 24 6 7.2260 -5.1711 1.4097 25 6 8.2716 -4.2735 1.5023 26 6 9.3308 -4.5289 2.3538 27 6 9.3439 -5.6803 3.1196 28 6 8.2987 -6.5792 3.0357 29 6 2.4228 -4.0367 1.4381 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 0.2818 -4.8762 -0.0018 33 1 0.8990 -4.4747 -1.6220 34 1 1.3398 -6.8479 -1.0907 35 1 2.8680 -5.9443 -1.2223 36 1 2.9620 -7.3613 0.7636 37 1 1.4138 -6.6988 1.3480 38 1 3.1108 -8.2616 1.8613 39 1 6.4011 -4.9731 0.7413 40 1 8.2643 -3.3734 0.9054 41 1 10.1495 -3.8278 2.4210 42 1 10.1723 -5.8769 3.7840 43 1 8.3093 -7.4780 3.6343 44 1 1.5216 -4.0539 2.0511 45 1 3.1272 -3.3088 1.8408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000336986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 112.795746 kcal Electronic energy + Delta-G solvation = -29847.187713 eV Core-core repulsion = 25867.459311 eV Total energy + Delta-G solvation = -3979.728403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.79031 -41.21235 -40.34477 -38.76685 -36.45156 -35.73930 -34.20274 -33.00473 -32.67601 -32.05200 -31.06872 -29.91010 -27.28207 -26.00000 -25.38696 -24.80242 -23.57850 -23.44651 -22.81578 -21.64860 -20.72661 -19.26860 -19.01226 -18.60135 -17.91261 -17.49963 -17.24203 -16.71670 -16.42294 -16.16337 -15.83653 -15.57534 -15.38766 -15.25648 -15.07100 -14.94379 -14.60061 -14.14743 -14.07187 -13.94394 -13.80045 -13.34167 -13.02217 -12.90735 -12.88427 -12.58250 -12.50465 -12.44085 -12.17503 -12.01724 -11.91115 -11.85191 -11.62634 -11.37209 -11.32877 -11.08883 -10.66010 -10.13686 -9.87115 -9.84898 -9.03872 -7.98936 -5.27961 -0.67989 0.20451 0.27242 0.78011 1.06001 1.44490 1.45829 1.55038 1.70423 1.82167 2.52974 2.55176 3.01970 3.23505 3.35012 3.54515 3.68109 3.69633 3.72361 3.95437 3.99433 4.03461 4.08220 4.18238 4.26093 4.28515 4.33649 4.37305 4.45916 4.57862 4.69326 4.71533 4.83935 4.84513 4.86884 5.00022 5.13248 5.13603 5.17026 5.33612 5.35709 5.36477 5.40801 5.44204 5.52612 5.79630 6.16804 6.23726 6.79857 7.04539 7.31054 8.02729 8.27732 9.23803 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011230 B = 0.003585 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.742947 B = 7808.757977 C = 9917.610055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.290 1.290 6 H -0.292 1.292 7 C -0.244 4.244 8 H 0.067 0.933 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.031 0.969 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.069 3.931 15 N -0.579 5.579 16 C 0.582 3.418 17 O -0.562 6.562 18 C -0.072 4.072 19 C 0.009 3.991 20 N -0.279 5.279 21 N -0.069 5.069 22 N -0.208 5.208 23 C 0.078 3.922 24 C -0.089 4.089 25 C -0.115 4.115 26 C -0.091 4.091 27 C -0.104 4.104 28 C -0.099 4.099 29 C 0.111 3.889 30 H 0.252 0.748 31 H 0.378 0.622 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.253 0.747 39 H 0.106 0.894 40 H 0.147 0.853 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.142 0.858 44 H 0.071 0.929 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.529 -17.962 3.290 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.794 3.206 4 H -0.196 1.196 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.375 4.375 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.058 3.942 11 H 0.049 0.951 12 C -0.157 4.157 13 C -0.159 4.159 14 C -0.051 4.051 15 N -0.311 5.311 16 C 0.367 3.633 17 O -0.441 6.441 18 C -0.205 4.205 19 C -0.150 4.150 20 N -0.142 5.142 21 N -0.048 5.048 22 N 0.001 4.999 23 C -0.011 4.011 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.109 4.109 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.014 4.014 30 H 0.061 0.939 31 H 0.211 0.789 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.126 0.874 38 H 0.268 0.732 39 H 0.124 0.876 40 H 0.165 0.835 41 H 0.185 0.815 42 H 0.190 0.810 43 H 0.160 0.840 44 H 0.089 0.911 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.904 -18.580 3.570 24.085 hybrid contribution -1.016 2.346 -0.051 2.557 sum 13.888 -16.233 3.519 21.652 Atomic orbital electron populations 1.69790 1.06320 1.26078 1.59099 1.25443 0.96314 1.00687 1.03387 0.85207 0.78178 0.80361 0.76848 1.19602 1.21690 1.21952 1.19541 0.91084 0.85377 1.41541 0.91510 1.42508 1.05585 1.00513 1.88151 1.20648 0.94737 0.86156 0.92679 0.95058 1.21756 0.98631 0.94181 1.01179 1.21792 1.00789 0.97308 0.96025 1.22879 0.98896 0.89140 0.94235 1.47975 1.17410 1.11605 1.54093 1.16942 0.81724 0.85305 0.79338 1.90861 1.62140 1.43780 1.47274 1.22137 0.84752 0.97785 1.15808 1.24909 1.02927 0.85554 1.01580 1.74919 0.94919 1.27257 1.17057 1.78334 1.19771 0.88431 1.18225 1.44874 1.05339 1.05835 1.43827 1.17844 0.88998 0.91031 1.03260 1.20960 0.99092 0.93001 0.97931 1.21345 0.93152 0.98954 0.99860 1.21808 0.98191 0.97380 0.93497 1.21502 0.98154 0.93028 0.99501 1.21246 0.92646 1.01306 0.96669 1.22407 0.97057 0.81662 1.00305 0.93858 0.78882 0.90823 0.92023 0.86593 0.92462 0.86254 0.87393 0.73151 0.87608 0.83533 0.81468 0.80984 0.83988 0.91114 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.47 13.06 21.65 0.28 -57.19 16 2 C -0.07 -3.70 5.50 84.86 0.47 -3.23 16 3 Si 0.96 46.03 29.55 68.60 2.03 48.05 16 4 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 7 C -0.24 -13.40 9.93 84.03 0.83 -12.56 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -35.23 5.13 -322.55 -1.65 -36.89 16 10 C 0.17 6.28 2.92 45.07 0.13 6.41 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.27 5.36 30.62 0.16 -3.10 16 13 C -0.12 -2.27 6.06 30.53 0.19 -2.08 16 14 C 0.07 1.21 5.41 86.22 0.47 1.68 16 15 N -0.58 -16.00 2.98 -823.94 -2.45 -18.46 16 16 C 0.58 18.12 6.66 86.58 0.58 18.69 16 17 O -0.56 -21.78 13.78 -4.10 -0.06 -21.84 16 18 C -0.07 -1.94 6.42 40.36 0.26 -1.68 16 19 C 0.01 0.18 9.78 84.20 0.82 1.01 16 20 N -0.28 -7.08 12.34 -57.47 -0.71 -7.79 16 21 N -0.07 -1.92 12.91 37.02 0.48 -1.44 16 22 N -0.21 -5.84 3.50 -176.71 -0.62 -6.46 16 23 C 0.08 2.10 5.93 38.12 0.23 2.32 16 24 C -0.09 -2.44 7.70 22.39 0.17 -2.26 16 25 C -0.11 -2.45 10.04 22.25 0.22 -2.23 16 26 C -0.09 -1.41 10.04 22.29 0.22 -1.18 16 27 C -0.10 -1.57 10.04 22.25 0.22 -1.34 16 28 C -0.10 -2.08 9.78 22.39 0.22 -1.86 16 29 C 0.11 3.92 6.02 86.37 0.52 4.44 16 30 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.38 19.33 7.80 -92.70 -0.72 18.60 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.12 1.65 3.41 -2.38 -0.01 1.64 16 37 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.25 2.89 5.82 -2.91 -0.02 2.87 16 39 H 0.11 3.28 6.78 -2.91 -0.02 3.26 16 40 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 41 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 43 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.06 2.43 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -74.72 368.26 3.32 -71.40 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.31 Total: 27.60 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.71 Total: 3.02 kcal Atomic # 7 Polarization: -123.55 SS G_CDS: -4.68 Total: -128.23 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -0.06 Total: -21.84 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -74.72 3.32 -71.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000336986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.194 kcal (2) G-P(sol) polarization free energy of solvation -74.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds