Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00470 * 2 1 4 4 H 1.48500 * 109.47147 * 270.00413 * 3 2 1 5 5 H 1.48504 * 109.46861 * 30.00126 * 3 2 1 6 6 H 1.48493 * 109.47323 * 150.00186 * 3 2 1 7 7 C 1.38815 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00138 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49863 * 34.93395 * 10 9 7 12 12 C 1.53043 * 109.49814 * 154.99853 * 10 9 7 13 13 C 1.53046 * 109.53675 * 181.31690 * 12 10 9 14 14 C 1.53190 * 109.31310 * 298.63335 * 13 12 10 15 15 N 1.46928 * 108.77354 * 54.63820 * 14 13 12 16 16 C 1.34774 * 120.63304 * 126.36740 * 15 14 13 17 17 O 1.21575 * 120.00549 * 185.84777 * 16 15 14 18 18 C 1.47672 * 119.99848 * 5.85335 * 16 15 14 19 19 C 1.39703 * 120.07850 * 221.62703 * 18 16 15 20 20 C 1.37739 * 119.91713 * 179.97438 * 19 18 16 21 21 C 1.39022 * 120.07968 * 359.97438 * 20 19 18 22 22 N 1.39928 * 119.91819 * 179.97438 * 21 20 19 23 23 C 1.36352 * 127.11491 * 359.68625 * 22 21 20 24 24 N 1.30504 * 107.19654 * 179.87170 * 23 22 21 25 25 N 1.28539 * 109.92059 * 0.39824 * 24 23 22 26 26 C 1.30507 * 109.91589 * 359.74853 * 25 24 23 27 27 C 1.39025 * 120.16549 * 0.27189 * 21 20 19 28 28 C 1.37741 * 120.07616 * 359.45218 * 27 21 20 29 29 C 1.46929 * 118.73952 * 306.64171 * 15 14 13 30 30 H 0.97002 * 119.99285 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99686 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.45980 * 61.29721 * 12 10 9 33 33 H 1.08998 * 109.46205 * 301.33692 * 12 10 9 34 34 H 1.09003 * 109.49480 * 178.68860 * 13 12 10 35 35 H 1.08996 * 109.52611 * 58.60459 * 13 12 10 36 36 H 1.09001 * 109.58737 * 294.85518 * 14 13 12 37 37 H 1.08993 * 109.70358 * 174.49264 * 14 13 12 38 38 H 1.07994 * 120.04181 * 359.95318 * 19 18 16 39 39 H 1.08005 * 119.95849 * 180.02562 * 20 19 18 40 40 H 1.08000 * 126.40026 * 359.97438 * 23 22 21 41 41 H 1.08002 * 126.39952 * 180.02562 * 26 25 24 42 42 H 1.07999 * 119.96013 * 179.70077 * 27 21 20 43 43 H 1.07999 * 120.03752 * 180.25019 * 28 27 21 44 44 H 1.08995 * 109.58963 * 173.14739 * 29 15 14 45 45 H 1.09007 * 109.58810 * 293.56929 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5642 -3.2073 -0.5891 12 6 5.4996 -2.2598 -0.6114 13 6 6.2533 -3.5914 -0.6419 14 6 6.4283 -4.1075 0.7898 15 7 5.1088 -4.1756 1.4325 16 6 4.6824 -5.3184 2.0058 17 8 3.5494 -5.3948 2.4399 18 6 5.5915 -6.4777 2.1068 19 6 5.1154 -7.7654 1.8486 20 6 5.9664 -8.8444 1.9432 21 6 7.2977 -8.6530 2.2948 22 7 8.1591 -9.7515 2.3905 23 6 7.8481 -11.0620 2.1781 24 7 8.9384 -11.7532 2.3692 25 7 9.9034 -10.9683 2.6932 26 6 9.4819 -9.7335 2.7211 27 6 7.7739 -7.3735 2.5575 28 6 6.9301 -6.2892 2.4593 29 6 4.2605 -2.9760 1.4330 30 1 -0.4849 0.8401 0.0004 31 1 3.8647 -0.3622 -0.0014 32 1 6.0557 -1.5415 -0.0091 33 1 5.3953 -1.8782 -1.6270 34 1 7.2324 -3.4448 -1.0980 35 1 5.6860 -4.3179 -1.2237 36 1 7.0716 -3.4268 1.3475 37 1 6.8769 -5.1006 0.7702 38 1 4.0813 -7.9148 1.5753 39 1 5.5991 -9.8402 1.7433 40 1 6.8806 -11.4543 1.9016 41 1 10.0708 -8.8605 2.9608 42 1 8.8076 -7.2291 2.8351 43 1 7.3017 -5.2951 2.6596 44 1 3.2781 -3.2233 1.8353 45 1 4.7234 -2.2012 2.0442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000440589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 105.891168 kcal Electronic energy + Delta-G solvation = -28681.794107 eV Core-core repulsion = 24701.766300 eV Total energy + Delta-G solvation = -3980.027808 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.74191 -40.83174 -39.22528 -37.50386 -35.48242 -34.70325 -32.57193 -32.05639 -31.46596 -30.95891 -30.64168 -28.76664 -26.06862 -24.59890 -24.37973 -23.78407 -22.46872 -21.87118 -21.63031 -20.65887 -19.58456 -19.14082 -17.66145 -17.54811 -16.68932 -16.42317 -16.22226 -15.84112 -15.33810 -14.94364 -14.92450 -14.76952 -14.40988 -14.29094 -14.08884 -13.90081 -13.67196 -13.38455 -13.12590 -12.86318 -12.68483 -12.53604 -12.05297 -11.88466 -11.81240 -11.55751 -11.29670 -11.01048 -10.99987 -10.83894 -10.76337 -10.39102 -10.02047 -9.99318 -9.96004 -9.70918 -9.64435 -9.19952 -9.07120 -8.55077 -7.37693 -5.83218 -3.21293 -0.04277 0.62831 1.43815 1.78381 2.35234 2.54492 2.87917 3.22719 3.30911 3.33319 3.40116 3.79949 3.91551 4.03097 4.14476 4.20959 4.45882 4.51797 4.56689 4.65710 4.69160 4.86606 4.93914 5.01650 5.05512 5.21707 5.25482 5.32636 5.36092 5.43264 5.46385 5.60447 5.67199 5.70772 5.75130 5.78840 5.91048 5.94812 5.97105 6.12384 6.26550 6.40352 6.49528 6.61974 6.78333 7.39671 7.91696 8.10617 8.12132 8.35205 9.11958 9.83499 10.01425 11.34593 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.002125 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.207682 B =13170.938288 C =13685.508152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.599 5.599 16 C 0.551 3.449 17 O -0.525 6.525 18 C -0.117 4.117 19 C -0.039 4.039 20 C -0.131 4.131 21 C 0.142 3.858 22 N -0.430 5.430 23 C 0.162 3.838 24 N -0.291 5.291 25 N -0.291 5.291 26 C 0.161 3.839 27 C -0.133 4.133 28 C -0.062 4.062 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.224 0.776 41 H 0.223 0.777 42 H 0.139 0.861 43 H 0.145 0.855 44 H 0.097 0.903 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.279 -15.880 3.118 25.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.026 4.026 15 N -0.332 5.332 16 C 0.338 3.662 17 O -0.402 6.402 18 C -0.121 4.121 19 C -0.058 4.058 20 C -0.150 4.150 21 C 0.049 3.951 22 N -0.117 5.117 23 C -0.124 4.124 24 N -0.128 5.128 25 N -0.128 5.128 26 C -0.125 4.125 27 C -0.153 4.153 28 C -0.082 4.082 29 C -0.032 4.032 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.240 0.760 41 H 0.240 0.760 42 H 0.157 0.843 43 H 0.163 0.837 44 H 0.116 0.884 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.383 -17.209 3.442 26.897 hybrid contribution -0.306 2.467 -0.045 2.487 sum 20.077 -14.741 3.397 25.138 Atomic orbital electron populations 1.69706 1.05123 1.25915 1.56862 1.24697 0.95238 0.97239 1.01695 0.86554 0.79163 0.85003 0.77764 1.21037 1.21676 1.20351 1.19090 0.80333 0.94871 1.43700 0.89036 1.42725 1.04159 1.01658 1.89842 1.20367 0.91024 0.89613 0.92786 0.92198 1.21878 0.96686 0.96386 1.01929 1.21875 1.00923 0.98223 0.95826 1.22063 0.84495 1.01966 0.94031 1.48174 1.18196 1.11692 1.55098 1.18203 0.86753 0.82373 0.78874 1.90856 1.18853 1.82340 1.48164 1.20207 0.94191 0.94596 1.03103 1.21144 1.00311 0.89955 0.94440 1.20813 0.90840 1.00533 1.02860 1.17877 0.89862 0.85651 1.01740 1.44307 1.09909 1.07340 1.50137 1.26852 1.02428 0.79532 1.03607 1.74268 0.96325 1.26012 1.16173 1.74266 1.22811 0.98636 1.17062 1.26829 0.82450 1.00327 1.02937 1.20761 1.01129 0.89935 1.03478 1.21320 0.91639 0.99324 0.95869 1.22697 0.95657 0.83942 1.00928 0.92948 0.80433 0.92079 0.91194 0.90795 0.91319 0.91186 0.89600 0.83530 0.84246 0.75994 0.76030 0.84315 0.83724 0.88445 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.38 27.73 -169.99 -4.71 16.67 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.22 6.52 56.52 0.37 -5.85 16 7 C -0.25 -6.85 10.41 -15.06 -0.16 -7.01 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 N -0.74 -16.53 4.93 -53.53 -0.26 -16.80 16 10 C 0.17 3.07 2.91 -68.04 -0.20 2.87 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -1.72 5.36 -26.69 -0.14 -1.86 16 13 C -0.13 -1.26 6.08 -26.61 -0.16 -1.42 16 14 C 0.10 0.87 4.93 -3.71 -0.02 0.85 16 15 N -0.60 -7.79 2.98 -174.21 -0.52 -8.31 16 16 C 0.55 7.62 7.30 -12.41 -0.09 7.53 16 17 O -0.53 -9.70 16.36 5.30 0.09 -9.61 16 18 C -0.12 -1.12 5.08 -104.95 -0.53 -1.65 16 19 C -0.04 -0.32 9.64 -39.22 -0.38 -0.70 16 20 C -0.13 -0.80 9.46 -39.47 -0.37 -1.17 16 21 C 0.14 0.88 6.65 -83.58 -0.56 0.32 16 22 N -0.43 -2.91 2.99 -63.17 -0.19 -3.10 16 23 C 0.16 1.18 12.06 -89.16 -1.08 0.10 16 24 N -0.29 -3.12 12.19 29.85 0.36 -2.76 16 25 N -0.29 -3.09 12.20 29.85 0.36 -2.73 16 26 C 0.16 1.13 12.06 -89.16 -1.08 0.05 16 27 C -0.13 -0.70 9.47 -39.47 -0.37 -1.07 16 28 C -0.06 -0.41 7.38 -39.22 -0.29 -0.70 16 29 C 0.09 1.54 6.00 -3.93 -0.02 1.52 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.36 7.86 5.66 -40.82 -0.23 7.62 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 37 H 0.09 0.59 4.80 -51.93 -0.25 0.34 16 38 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 0.50 6.84 -52.48 -0.36 0.15 16 40 H 0.22 0.71 7.17 -52.49 -0.38 0.34 16 41 H 0.22 0.60 7.17 -52.49 -0.38 0.23 16 42 H 0.14 0.35 6.84 -52.49 -0.36 -0.01 16 43 H 0.15 0.76 6.72 -52.49 -0.35 0.41 16 44 H 0.10 2.00 7.00 -51.93 -0.36 1.64 16 45 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 367.92 15.07 5.54 5.54 Total: -1.00 -36.73 367.92 -9.73 -46.46 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.64 Total: 4.87 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -5.54 Total: -2.23 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.53 Total: -61.69 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.67 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.73 -9.73 -46.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000440589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.351 kcal (2) G-P(sol) polarization free energy of solvation -36.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds