Wall clock time and date at job start Sat Apr 11 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00470 * 2 1 4 4 H 1.48500 * 109.47147 * 270.00413 * 3 2 1 5 5 H 1.48504 * 109.46861 * 30.00126 * 3 2 1 6 6 H 1.48493 * 109.47323 * 150.00186 * 3 2 1 7 7 C 1.38815 * 119.99860 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00090 * 0.02562 * 7 2 1 9 9 N 1.36942 * 120.00242 * 179.97438 * 7 2 1 10 10 C 1.46493 * 120.00138 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49863 * 34.93395 * 10 9 7 12 12 C 1.53043 * 109.49814 * 154.99853 * 10 9 7 13 13 C 1.53046 * 109.53675 * 181.31690 * 12 10 9 14 14 C 1.53190 * 109.31310 * 298.63335 * 13 12 10 15 15 N 1.46928 * 108.77354 * 54.63820 * 14 13 12 16 16 C 1.34774 * 120.63304 * 126.36740 * 15 14 13 17 17 O 1.21575 * 120.00549 * 185.84777 * 16 15 14 18 18 C 1.47672 * 119.99848 * 5.85335 * 16 15 14 19 19 C 1.39703 * 120.07850 * 221.62703 * 18 16 15 20 20 C 1.37739 * 119.91713 * 179.97438 * 19 18 16 21 21 C 1.39022 * 120.07968 * 359.97438 * 20 19 18 22 22 N 1.39928 * 119.91819 * 179.97438 * 21 20 19 23 23 C 1.36352 * 127.11491 * 359.68625 * 22 21 20 24 24 N 1.30504 * 107.19654 * 179.87170 * 23 22 21 25 25 N 1.28539 * 109.92059 * 0.39824 * 24 23 22 26 26 C 1.30507 * 109.91589 * 359.74853 * 25 24 23 27 27 C 1.39025 * 120.16549 * 0.27189 * 21 20 19 28 28 C 1.37741 * 120.07616 * 359.45218 * 27 21 20 29 29 C 1.46929 * 118.73952 * 306.64171 * 15 14 13 30 30 H 0.97002 * 119.99285 * 359.97438 * 1 2 3 31 31 H 0.97005 * 119.99686 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.45980 * 61.29721 * 12 10 9 33 33 H 1.08998 * 109.46205 * 301.33692 * 12 10 9 34 34 H 1.09003 * 109.49480 * 178.68860 * 13 12 10 35 35 H 1.08996 * 109.52611 * 58.60459 * 13 12 10 36 36 H 1.09001 * 109.58737 * 294.85518 * 14 13 12 37 37 H 1.08993 * 109.70358 * 174.49264 * 14 13 12 38 38 H 1.07994 * 120.04181 * 359.95318 * 19 18 16 39 39 H 1.08005 * 119.95849 * 180.02562 * 20 19 18 40 40 H 1.08000 * 126.40026 * 359.97438 * 23 22 21 41 41 H 1.08002 * 126.39952 * 180.02562 * 26 25 24 42 42 H 1.07999 * 119.96013 * 179.70077 * 27 21 20 43 43 H 1.07999 * 120.03752 * 180.25019 * 28 27 21 44 44 H 1.08995 * 109.58963 * 173.14739 * 29 15 14 45 45 H 1.09007 * 109.58810 * 293.56929 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0014 9 7 3.3796 -1.2023 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5642 -3.2073 -0.5891 12 6 5.4996 -2.2598 -0.6114 13 6 6.2533 -3.5914 -0.6419 14 6 6.4283 -4.1075 0.7898 15 7 5.1088 -4.1756 1.4325 16 6 4.6824 -5.3184 2.0058 17 8 3.5494 -5.3948 2.4399 18 6 5.5915 -6.4777 2.1068 19 6 5.1154 -7.7654 1.8486 20 6 5.9664 -8.8444 1.9432 21 6 7.2977 -8.6530 2.2948 22 7 8.1591 -9.7515 2.3905 23 6 7.8481 -11.0620 2.1781 24 7 8.9384 -11.7532 2.3692 25 7 9.9034 -10.9683 2.6932 26 6 9.4819 -9.7335 2.7211 27 6 7.7739 -7.3735 2.5575 28 6 6.9301 -6.2892 2.4593 29 6 4.2605 -2.9760 1.4330 30 1 -0.4849 0.8401 0.0004 31 1 3.8647 -0.3622 -0.0014 32 1 6.0557 -1.5415 -0.0091 33 1 5.3953 -1.8782 -1.6270 34 1 7.2324 -3.4448 -1.0980 35 1 5.6860 -4.3179 -1.2237 36 1 7.0716 -3.4268 1.3475 37 1 6.8769 -5.1006 0.7702 38 1 4.0813 -7.9148 1.5753 39 1 5.5991 -9.8402 1.7433 40 1 6.8806 -11.4543 1.9016 41 1 10.0708 -8.8605 2.9608 42 1 8.8076 -7.2291 2.8351 43 1 7.3017 -5.2951 2.6596 44 1 3.2781 -3.2233 1.8353 45 1 4.7234 -2.2012 2.0442 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000440589.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:18 Heat of formation + Delta-G solvation = 82.485953 kcal Electronic energy + Delta-G solvation = -28682.809034 eV Core-core repulsion = 24701.766300 eV Total energy + Delta-G solvation = -3981.042734 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.28646 -41.71440 -40.00190 -38.71783 -36.46476 -35.93190 -34.05053 -32.94273 -32.62503 -31.60134 -31.42304 -30.13152 -26.99842 -25.74665 -25.24382 -24.76622 -23.22429 -23.04601 -22.21467 -21.85295 -20.55720 -19.75873 -19.52532 -18.50192 -17.40130 -17.23745 -16.78755 -16.72982 -16.59456 -16.20467 -15.76314 -15.61644 -15.52523 -15.12279 -15.03319 -14.90235 -14.56590 -14.39009 -14.21690 -14.04856 -13.92683 -13.79913 -13.30854 -12.97397 -12.67228 -12.51424 -12.35546 -12.29627 -12.15873 -11.91117 -11.86840 -11.76467 -11.56017 -11.36561 -11.16374 -10.99711 -10.60691 -10.18852 -9.90471 -9.62605 -9.27196 -8.05135 -5.41524 -0.60630 0.15396 0.88608 1.29523 1.36314 1.42210 1.49169 1.63171 1.78039 1.91870 2.46722 2.57976 3.25432 3.33541 3.35725 3.52210 3.52758 3.62398 3.79181 3.93364 4.00444 4.03995 4.06145 4.12811 4.21922 4.26408 4.35451 4.48135 4.51284 4.59611 4.68684 4.81429 4.84934 4.90382 4.91938 4.95205 5.02016 5.13052 5.18373 5.25420 5.36526 5.41243 5.44195 5.48609 5.73800 5.94796 6.18362 6.37350 7.03094 7.06168 7.56556 7.76722 7.98770 9.16555 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029965 B = 0.002125 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.207682 B =13170.938288 C =13685.508152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.964 3.036 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.237 4.237 8 H 0.043 0.957 9 N -0.743 5.743 10 C 0.168 3.832 11 H 0.027 0.973 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.092 3.908 15 N -0.596 5.596 16 C 0.545 3.455 17 O -0.590 6.590 18 C -0.136 4.136 19 C -0.052 4.052 20 C -0.124 4.124 21 C 0.145 3.855 22 N -0.431 5.431 23 C 0.168 3.832 24 N -0.337 5.337 25 N -0.339 5.339 26 C 0.174 3.826 27 C -0.118 4.118 28 C -0.054 4.054 29 C 0.105 3.895 30 H 0.259 0.741 31 H 0.371 0.629 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.162 0.838 40 H 0.255 0.745 41 H 0.265 0.735 42 H 0.178 0.822 43 H 0.166 0.834 44 H 0.043 0.957 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.520 -15.355 3.188 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.790 3.210 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.368 4.368 8 H 0.061 0.939 9 N -0.387 5.387 10 C 0.059 3.941 11 H 0.045 0.955 12 C -0.160 4.160 13 C -0.163 4.163 14 C -0.028 4.028 15 N -0.328 5.328 16 C 0.335 3.665 17 O -0.472 6.472 18 C -0.139 4.139 19 C -0.072 4.072 20 C -0.144 4.144 21 C 0.052 3.948 22 N -0.118 5.118 23 C -0.119 4.119 24 N -0.173 5.173 25 N -0.174 5.174 26 C -0.112 4.112 27 C -0.137 4.137 28 C -0.073 4.073 29 C -0.021 4.021 30 H 0.067 0.933 31 H 0.205 0.795 32 H 0.099 0.901 33 H 0.085 0.915 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.133 0.867 38 H 0.150 0.850 39 H 0.180 0.820 40 H 0.271 0.729 41 H 0.280 0.720 42 H 0.195 0.805 43 H 0.183 0.817 44 H 0.062 0.938 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.739 -16.739 3.495 30.902 hybrid contribution -1.962 2.134 -0.073 2.899 sum 23.777 -14.606 3.422 28.114 Atomic orbital electron populations 1.69923 1.07485 1.26870 1.59208 1.25650 0.96216 1.01782 1.02152 0.85284 0.78722 0.78656 0.78290 1.20062 1.22496 1.16784 1.18944 0.82795 0.93068 1.42029 0.93853 1.42641 1.02268 1.03769 1.89985 1.20562 0.93272 0.86991 0.93273 0.95520 1.21811 0.93564 0.99185 1.01449 1.21897 1.02194 0.95600 0.96563 1.22485 0.82359 1.04578 0.93424 1.48208 1.19273 1.10216 1.55082 1.18974 0.86571 0.83410 0.77553 1.90820 1.21950 1.83468 1.50912 1.19906 0.94942 0.92852 1.06235 1.21085 1.00232 0.90387 0.95479 1.20948 0.90733 1.00819 1.01884 1.18008 0.89629 0.85998 1.01189 1.44373 1.10010 1.07248 1.50181 1.27478 1.02804 0.79660 1.01945 1.74185 0.97535 1.27446 1.18118 1.74177 1.23817 1.00281 1.19170 1.27605 0.82520 1.00475 1.00636 1.21114 1.02550 0.88630 1.01437 1.21462 0.89979 1.00905 0.94937 1.22134 0.94281 0.85920 0.99759 0.93274 0.79475 0.90061 0.91471 0.86593 0.92599 0.88024 0.86711 0.85032 0.82001 0.72940 0.71983 0.80512 0.81650 0.93791 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.13 13.97 21.65 0.30 -63.83 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.96 44.50 27.73 68.60 1.90 46.40 16 4 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.24 -9.78 6.52 99.48 0.65 -9.13 16 7 C -0.24 -13.72 10.41 84.03 0.87 -12.84 16 8 H 0.04 2.85 8.06 -2.91 -0.02 2.83 16 9 N -0.74 -33.59 4.93 -323.26 -1.59 -35.19 16 10 C 0.17 6.09 2.91 44.93 0.13 6.22 16 11 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 12 C -0.12 -2.89 5.36 30.62 0.16 -2.73 16 13 C -0.12 -1.93 6.08 30.67 0.19 -1.74 16 14 C 0.09 1.26 4.93 86.36 0.43 1.69 16 15 N -0.60 -15.16 2.98 -823.34 -2.45 -17.61 16 16 C 0.55 15.50 7.30 86.74 0.63 16.13 16 17 O -0.59 -23.79 16.36 -3.95 -0.06 -23.86 16 18 C -0.14 -2.40 5.08 -20.08 -0.10 -2.50 16 19 C -0.05 -0.82 9.64 22.51 0.22 -0.61 16 20 C -0.12 -1.19 9.46 22.34 0.21 -0.98 16 21 C 0.14 1.20 6.65 38.23 0.25 1.45 16 22 N -0.43 -4.22 2.99 -353.76 -1.06 -5.28 16 23 C 0.17 2.01 12.06 179.84 2.17 4.18 16 24 N -0.34 -6.78 12.19 -59.47 -0.73 -7.50 16 25 N -0.34 -6.57 12.20 -59.46 -0.73 -7.30 16 26 C 0.17 1.78 12.06 179.84 2.17 3.95 16 27 C -0.12 -0.60 9.47 22.34 0.21 -0.39 16 28 C -0.05 -0.49 7.38 22.51 0.17 -0.32 16 29 C 0.10 3.63 6.00 86.22 0.52 4.14 16 30 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 31 H 0.37 15.46 5.66 -92.70 -0.52 14.94 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.87 8.13 -2.39 -0.02 0.85 16 37 H 0.12 0.98 4.80 -2.39 -0.01 0.97 16 38 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.16 0.71 6.84 -2.91 -0.02 0.69 16 40 H 0.25 0.89 7.17 -2.91 -0.02 0.86 16 41 H 0.26 -0.05 7.17 -2.91 -0.02 -0.07 16 42 H 0.18 -0.41 6.84 -2.91 -0.02 -0.43 16 43 H 0.17 0.81 6.72 -2.91 -0.02 0.79 16 44 H 0.04 1.99 7.00 -2.39 -0.02 1.97 16 45 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 Total: -1.00 -91.09 367.92 4.74 -86.35 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.45 Total: 15.65 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 8.70 Total: 12.17 kcal Atomic # 7 Polarization: -130.46 SS G_CDS: -6.25 Total: -136.71 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -0.06 Total: -23.86 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Total: -91.09 4.74 -86.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000440589.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.839 kcal (2) G-P(sol) polarization free energy of solvation -91.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds