Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48501 * 109.46709 * 240.27353 * 3 2 1 5 5 H 1.48494 * 109.47294 * 0.27444 * 3 2 1 6 6 H 1.48495 * 109.46758 * 120.27793 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.27587 * 2 1 3 8 8 H 1.07996 * 120.00069 * 179.72320 * 7 2 1 9 9 N 1.36941 * 119.99873 * 359.72489 * 7 2 1 10 10 C 1.46500 * 119.99816 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49806 * 34.93267 * 10 9 7 12 12 C 1.53034 * 109.49675 * 155.00085 * 10 9 7 13 13 C 1.53040 * 109.53706 * 181.31621 * 12 10 9 14 14 C 1.53198 * 109.31219 * 298.63316 * 13 12 10 15 15 N 1.46921 * 108.77557 * 54.63528 * 14 13 12 16 16 C 1.34775 * 120.63563 * 126.41344 * 15 14 13 17 17 O 1.21551 * 120.00385 * 176.17782 * 16 15 14 18 18 C 1.47858 * 119.99424 * 356.18728 * 16 15 14 19 19 C 1.39622 * 120.11728 * 50.76330 * 18 16 15 20 20 C 1.37969 * 119.98372 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.21993 * 0.02562 * 20 19 18 22 22 C 1.38901 * 120.22920 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.99983 * 179.97438 * 22 21 20 24 24 C 1.36120 * 125.93826 * 4.71724 * 23 22 21 25 25 C 1.35372 * 106.04955 * 179.84496 * 24 23 22 26 26 N 1.33783 * 106.53693 * 0.41006 * 25 24 23 27 27 N 1.28601 * 109.05870 * 359.73416 * 26 25 24 28 28 C 1.38586 * 120.01167 * 359.74998 * 22 21 20 29 29 C 1.46927 * 118.73691 * 306.39258 * 15 14 13 30 30 H 0.97006 * 120.00221 * 359.72454 * 1 2 3 31 31 H 0.97000 * 119.99850 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.45859 * 301.33197 * 12 10 9 33 33 H 1.08994 * 109.46677 * 61.30678 * 12 10 9 34 34 H 1.09005 * 109.50097 * 58.58005 * 13 12 10 35 35 H 1.09000 * 109.50334 * 178.67972 * 13 12 10 36 36 H 1.09003 * 109.58732 * 174.42073 * 14 13 12 37 37 H 1.09002 * 109.58317 * 294.70240 * 14 13 12 38 38 H 1.07996 * 120.00422 * 359.94975 * 19 18 16 39 39 H 1.08005 * 119.88942 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.89210 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.97539 * 359.97438 * 24 23 22 42 42 H 1.07999 * 126.73198 * 180.13585 * 25 24 23 43 43 H 1.08002 * 120.11402 * 180.27615 * 28 22 21 44 44 H 1.09001 * 109.58655 * 293.82117 * 29 15 14 45 45 H 1.09007 * 109.58549 * 173.39687 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6993 -1.2159 5 1 1.2852 2.7465 0.0067 6 1 3.1089 1.6935 1.2091 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3255 -2.3881 -0.0058 10 6 2.0580 -3.6568 -0.0113 11 1 2.9717 -3.5519 0.5738 12 6 1.1834 -4.7542 0.5992 13 6 1.9598 -6.0728 0.6239 14 6 2.3143 -6.4790 -0.8101 15 7 3.0309 -5.3688 -1.4525 16 6 4.2314 -5.5697 -2.0312 17 8 4.7823 -4.6600 -2.6197 18 6 4.8781 -6.8969 -1.9504 19 6 4.1667 -8.0455 -2.3024 20 6 4.7730 -9.2825 -2.2264 21 6 6.0845 -9.3898 -1.8019 22 6 6.8007 -8.2530 -1.4495 23 7 8.1307 -8.3674 -1.0190 24 6 8.8641 -9.5137 -0.9865 25 6 10.0824 -9.1652 -0.5102 26 7 10.0352 -7.8500 -0.2696 27 7 8.8684 -7.4078 -0.5807 28 6 6.2028 -7.0052 -1.5277 29 6 2.4137 -4.0355 -1.4525 30 1 -0.4851 0.8401 0.0040 31 1 0.3555 -2.3880 -0.0014 32 1 0.9086 -4.4755 1.6165 33 1 0.2813 -4.8753 -0.0004 34 1 2.8747 -5.9457 1.2027 35 1 1.3449 -6.8486 1.0803 36 1 2.9512 -7.3634 -0.7925 37 1 1.4015 -6.6970 -1.3644 38 1 3.1419 -7.9657 -2.6336 39 1 4.2211 -10.1701 -2.4987 40 1 6.5541 -10.3607 -1.7448 41 1 8.5405 -10.5005 -1.2828 42 1 10.9255 -9.8211 -0.3509 43 1 6.7596 -6.1198 -1.2583 44 1 1.5088 -4.0518 -2.0600 45 1 3.1161 -3.3077 -1.8589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001072741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = 122.669520 kcal Electronic energy + Delta-G solvation = -28916.472643 eV Core-core repulsion = 24937.172399 eV Total energy + Delta-G solvation = -3979.300244 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.78626 -40.73114 -39.07234 -37.33264 -35.17527 -34.43795 -32.48382 -32.07657 -31.32127 -31.09628 -30.43175 -28.26217 -25.89685 -24.79280 -24.21615 -23.84510 -22.44062 -22.00855 -21.69006 -20.52125 -19.55354 -18.46161 -17.15022 -17.04960 -16.85561 -16.68787 -16.13959 -15.80376 -15.30427 -15.07671 -14.67778 -14.50979 -14.26723 -14.19922 -13.94142 -13.51661 -13.47988 -13.40307 -12.79730 -12.53273 -12.50071 -12.37776 -12.26663 -11.83178 -11.52712 -11.35265 -11.32486 -11.04016 -10.84074 -10.69183 -10.62722 -10.25156 -9.97487 -9.88186 -9.86383 -9.67979 -9.52679 -9.10144 -9.06203 -8.44621 -7.02859 -5.80102 -3.10264 0.06988 0.53984 1.50200 1.79815 2.18812 2.60258 2.95120 3.25392 3.46444 3.49958 3.52356 3.88388 4.02069 4.21054 4.38734 4.48291 4.52542 4.57608 4.68754 4.78949 4.82017 4.86492 5.01607 5.08461 5.18740 5.31432 5.43843 5.46976 5.54076 5.60699 5.63170 5.74902 5.75428 5.78214 5.86519 5.97101 5.99241 6.11189 6.16035 6.29382 6.38161 6.42629 6.63679 6.77511 6.94552 7.48934 7.70443 8.07704 8.17661 8.37962 9.49932 10.02866 10.38154 11.41900 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.002589 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.956993 B =10813.064641 C =12001.118911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.096 3.904 15 N -0.595 5.595 16 C 0.552 3.448 17 O -0.526 6.526 18 C -0.093 4.093 19 C -0.082 4.082 20 C -0.101 4.101 21 C -0.103 4.103 22 C 0.116 3.884 23 N -0.241 5.241 24 C -0.051 4.051 25 C -0.044 4.044 26 N -0.262 5.262 27 N -0.072 5.072 28 C -0.053 4.053 29 C 0.092 3.908 30 H 0.256 0.744 31 H 0.386 0.614 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.194 0.806 42 H 0.196 0.804 43 H 0.151 0.849 44 H 0.065 0.935 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.021 -28.977 -3.016 30.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.027 4.027 15 N -0.328 5.328 16 C 0.338 3.662 17 O -0.403 6.403 18 C -0.097 4.097 19 C -0.101 4.101 20 C -0.120 4.120 21 C -0.124 4.124 22 C 0.025 3.975 23 N -0.029 5.029 24 C -0.199 4.199 25 C -0.200 4.200 26 N -0.128 5.128 27 N -0.051 5.051 28 C -0.074 4.074 29 C -0.032 4.032 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.211 0.789 42 H 0.213 0.787 43 H 0.169 0.831 44 H 0.083 0.917 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.545 -26.769 -2.973 28.575 hybrid contribution 0.019 -0.366 -0.300 0.474 sum 9.564 -27.135 -3.274 28.957 Atomic orbital electron populations 1.69650 1.05126 1.25933 1.57292 1.24746 0.95521 0.97778 1.02510 0.86263 0.78573 0.83304 0.78072 1.21049 1.21657 1.21148 1.19226 0.91095 0.83954 1.43315 0.91066 1.42363 1.05801 0.99538 1.88052 1.20490 0.95051 0.86534 0.92243 0.93055 1.21831 0.98679 0.94033 1.01940 1.21889 1.01024 0.98306 0.95691 1.22055 0.96999 0.89434 0.94165 1.48225 1.18451 1.11471 1.54649 1.18165 0.81281 0.87054 0.79729 1.90846 1.63638 1.43476 1.42295 1.19941 0.93871 0.94518 1.01400 1.21576 1.00381 0.91287 0.96901 1.20965 0.93686 0.98095 0.99237 1.21011 0.95009 0.96779 0.99574 1.17469 0.80545 0.95558 1.03938 1.44786 1.10255 1.06994 1.40863 1.23837 0.93249 0.93616 1.09163 1.23700 0.98324 0.93490 1.04487 1.75180 1.10426 1.10257 1.16964 1.78497 0.97981 1.14293 1.14312 1.20964 0.93633 0.96571 0.96202 1.22902 0.97917 0.81025 1.01363 0.93388 0.78028 0.91305 0.91952 0.91556 0.90895 0.89697 0.91007 0.83967 0.83721 0.84379 0.78860 0.78740 0.83134 0.91690 0.88953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.77 29.55 -169.99 -5.02 17.74 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 6 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.59 5.12 -53.31 -0.27 -17.86 16 10 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.90 5.35 -26.69 -0.14 -2.04 16 13 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 14 C 0.10 1.00 5.37 -3.71 -0.02 0.98 16 15 N -0.60 -8.69 2.97 -173.87 -0.52 -9.20 16 16 C 0.55 8.59 7.24 -12.32 -0.09 8.50 16 17 O -0.53 -10.59 16.47 5.32 0.09 -10.50 16 18 C -0.09 -1.08 5.00 -104.99 -0.52 -1.60 16 19 C -0.08 -0.62 7.36 -39.16 -0.29 -0.91 16 20 C -0.10 -0.52 10.02 -39.67 -0.40 -0.92 16 21 C -0.10 -0.61 9.45 -39.33 -0.37 -0.98 16 22 C 0.12 1.11 6.66 -83.62 -0.56 0.56 16 23 N -0.24 -2.55 3.56 -10.50 -0.04 -2.59 16 24 C -0.05 -0.36 10.91 -16.67 -0.18 -0.54 16 25 C -0.04 -0.37 12.05 -17.72 -0.21 -0.58 16 26 N -0.26 -3.38 12.39 30.24 0.37 -3.01 16 27 N -0.07 -0.99 12.42 60.35 0.75 -0.25 16 28 C -0.05 -0.63 9.31 -38.99 -0.36 -1.00 16 29 C 0.09 1.69 6.01 -3.71 -0.02 1.67 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.68 4.55 -51.93 -0.24 0.45 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.14 0.85 7.07 -52.49 -0.37 0.48 16 39 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 40 H 0.14 0.37 6.77 -52.48 -0.36 0.02 16 41 H 0.19 0.45 7.12 -52.49 -0.37 0.08 16 42 H 0.20 0.84 8.06 -52.49 -0.42 0.41 16 43 H 0.15 2.10 7.70 -52.49 -0.40 1.70 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.09 2.01 7.03 -51.93 -0.36 1.65 16 LS Contribution 373.27 15.07 5.63 5.63 Total: -1.00 -36.12 373.27 -7.84 -43.95 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -5.77 Total: 6.03 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.78 Total: -2.77 kcal Atomic # 7 Polarization: -61.10 SS G_CDS: 1.02 Total: -60.08 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.12 -7.84 -43.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.624 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.954 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds