Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86805 * 119.99759 * 2 1 4 4 H 1.48501 * 109.46709 * 240.27353 * 3 2 1 5 5 H 1.48494 * 109.47294 * 0.27444 * 3 2 1 6 6 H 1.48495 * 109.46758 * 120.27793 * 3 2 1 7 7 C 1.38812 * 119.99971 * 180.27587 * 2 1 3 8 8 H 1.07996 * 120.00069 * 179.72320 * 7 2 1 9 9 N 1.36941 * 119.99873 * 359.72489 * 7 2 1 10 10 C 1.46500 * 119.99816 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49806 * 34.93267 * 10 9 7 12 12 C 1.53034 * 109.49675 * 155.00085 * 10 9 7 13 13 C 1.53040 * 109.53706 * 181.31621 * 12 10 9 14 14 C 1.53198 * 109.31219 * 298.63316 * 13 12 10 15 15 N 1.46921 * 108.77557 * 54.63528 * 14 13 12 16 16 C 1.34775 * 120.63563 * 126.41344 * 15 14 13 17 17 O 1.21551 * 120.00385 * 176.17782 * 16 15 14 18 18 C 1.47858 * 119.99424 * 356.18728 * 16 15 14 19 19 C 1.39622 * 120.11728 * 50.76330 * 18 16 15 20 20 C 1.37969 * 119.98372 * 179.97438 * 19 18 16 21 21 C 1.38263 * 120.21993 * 0.02562 * 20 19 18 22 22 C 1.38901 * 120.22920 * 359.97438 * 21 20 19 23 23 N 1.40268 * 119.99983 * 179.97438 * 22 21 20 24 24 C 1.36120 * 125.93826 * 4.71724 * 23 22 21 25 25 C 1.35372 * 106.04955 * 179.84496 * 24 23 22 26 26 N 1.33783 * 106.53693 * 0.41006 * 25 24 23 27 27 N 1.28601 * 109.05870 * 359.73416 * 26 25 24 28 28 C 1.38586 * 120.01167 * 359.74998 * 22 21 20 29 29 C 1.46927 * 118.73691 * 306.39258 * 15 14 13 30 30 H 0.97006 * 120.00221 * 359.72454 * 1 2 3 31 31 H 0.97000 * 119.99850 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.45859 * 301.33197 * 12 10 9 33 33 H 1.08994 * 109.46677 * 61.30678 * 12 10 9 34 34 H 1.09005 * 109.50097 * 58.58005 * 13 12 10 35 35 H 1.09000 * 109.50334 * 178.67972 * 13 12 10 36 36 H 1.09003 * 109.58732 * 174.42073 * 14 13 12 37 37 H 1.09002 * 109.58317 * 294.70240 * 14 13 12 38 38 H 1.07996 * 120.00422 * 359.94975 * 19 18 16 39 39 H 1.08005 * 119.88942 * 179.97438 * 20 19 18 40 40 H 1.08005 * 119.89210 * 180.02562 * 21 20 19 41 41 H 1.07997 * 126.97539 * 359.97438 * 24 23 22 42 42 H 1.07999 * 126.73198 * 180.13585 * 25 24 23 43 43 H 1.08002 * 120.11402 * 180.27615 * 28 22 21 44 44 H 1.09001 * 109.58655 * 293.82117 * 29 15 14 45 45 H 1.09007 * 109.58549 * 173.39687 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0988 1.6993 -1.2159 5 1 1.2852 2.7465 0.0067 6 1 3.1089 1.6935 1.2091 7 6 2.0102 -1.2021 -0.0058 8 1 3.0902 -1.2021 -0.0103 9 7 1.3255 -2.3881 -0.0058 10 6 2.0580 -3.6568 -0.0113 11 1 2.9717 -3.5519 0.5738 12 6 1.1834 -4.7542 0.5992 13 6 1.9598 -6.0728 0.6239 14 6 2.3143 -6.4790 -0.8101 15 7 3.0309 -5.3688 -1.4525 16 6 4.2314 -5.5697 -2.0312 17 8 4.7823 -4.6600 -2.6197 18 6 4.8781 -6.8969 -1.9504 19 6 4.1667 -8.0455 -2.3024 20 6 4.7730 -9.2825 -2.2264 21 6 6.0845 -9.3898 -1.8019 22 6 6.8007 -8.2530 -1.4495 23 7 8.1307 -8.3674 -1.0190 24 6 8.8641 -9.5137 -0.9865 25 6 10.0824 -9.1652 -0.5102 26 7 10.0352 -7.8500 -0.2696 27 7 8.8684 -7.4078 -0.5807 28 6 6.2028 -7.0052 -1.5277 29 6 2.4137 -4.0355 -1.4525 30 1 -0.4851 0.8401 0.0040 31 1 0.3555 -2.3880 -0.0014 32 1 0.9086 -4.4755 1.6165 33 1 0.2813 -4.8753 -0.0004 34 1 2.8747 -5.9457 1.2027 35 1 1.3449 -6.8486 1.0803 36 1 2.9512 -7.3634 -0.7925 37 1 1.4015 -6.6970 -1.3644 38 1 3.1419 -7.9657 -2.6336 39 1 4.2211 -10.1701 -2.4987 40 1 6.5541 -10.3607 -1.7448 41 1 8.5405 -10.5005 -1.2828 42 1 10.9255 -9.8211 -0.3509 43 1 6.7596 -6.1198 -1.2583 44 1 1.5088 -4.0518 -2.0600 45 1 3.1161 -3.3077 -1.8589 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001072741.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = 96.417022 kcal Electronic energy + Delta-G solvation = -28917.611037 eV Core-core repulsion = 24937.172399 eV Total energy + Delta-G solvation = -3980.438638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.48046 -41.74845 -39.97338 -38.68994 -36.37856 -35.69499 -33.99296 -32.83951 -32.76120 -31.87222 -31.23873 -29.86328 -27.02744 -25.97993 -25.40672 -24.89310 -23.33660 -23.24188 -22.41493 -21.69069 -20.63021 -19.45143 -19.14838 -17.98276 -17.57286 -17.43477 -17.16891 -16.84252 -16.64558 -16.08728 -15.78965 -15.63993 -15.46712 -15.26587 -15.08242 -14.80971 -14.77361 -14.27556 -14.03706 -13.88595 -13.72158 -13.21053 -13.07660 -12.97961 -12.92251 -12.55344 -12.50727 -12.31255 -12.23744 -12.05617 -11.94247 -11.93383 -11.70235 -11.39225 -11.19189 -11.01271 -10.51413 -10.24201 -9.83321 -9.72312 -9.06554 -8.02664 -5.31806 -0.54698 -0.16039 0.88716 1.16338 1.41002 1.43425 1.49747 1.51874 1.52119 1.88202 2.49772 2.51424 3.18932 3.30104 3.40874 3.64301 3.69815 3.71114 3.91142 3.95655 3.99442 4.05570 4.16930 4.20156 4.23251 4.26745 4.30176 4.34446 4.57442 4.59659 4.68022 4.71953 4.82844 4.86418 4.98686 5.03783 5.06921 5.11978 5.15486 5.24135 5.34680 5.38634 5.41610 5.45400 5.51819 5.78206 6.20252 6.31390 6.97112 7.27205 7.36160 7.98636 8.24818 9.19444 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014334 B = 0.002589 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.956993 B =10813.064641 C =12001.118911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.064 4.064 3 Si 0.966 3.034 4 H -0.285 1.285 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.061 0.939 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.025 0.975 12 C -0.118 4.118 13 C -0.123 4.123 14 C 0.091 3.909 15 N -0.593 5.593 16 C 0.545 3.455 17 O -0.591 6.591 18 C -0.113 4.113 19 C -0.074 4.074 20 C -0.076 4.076 21 C -0.078 4.078 22 C 0.100 3.900 23 N -0.247 5.247 24 C -0.027 4.027 25 C -0.055 4.055 26 N -0.305 5.305 27 N -0.139 5.139 28 C -0.081 4.081 29 C 0.107 3.893 30 H 0.254 0.746 31 H 0.379 0.621 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.166 0.834 39 H 0.199 0.801 40 H 0.187 0.813 41 H 0.252 0.748 42 H 0.231 0.769 43 H 0.105 0.895 44 H 0.068 0.932 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.196 -35.263 -3.449 36.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.257 4.257 3 Si 0.794 3.206 4 H -0.211 1.211 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.079 0.921 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.043 0.957 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.029 4.029 15 N -0.324 5.324 16 C 0.334 3.666 17 O -0.472 6.472 18 C -0.117 4.117 19 C -0.093 4.093 20 C -0.094 4.094 21 C -0.098 4.098 22 C 0.009 3.991 23 N -0.034 5.034 24 C -0.175 4.175 25 C -0.212 4.212 26 N -0.170 5.170 27 N -0.117 5.117 28 C -0.102 4.102 29 C -0.018 4.018 30 H 0.063 0.937 31 H 0.212 0.788 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.135 0.865 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.184 0.816 39 H 0.216 0.784 40 H 0.204 0.796 41 H 0.268 0.732 42 H 0.248 0.752 43 H 0.123 0.877 44 H 0.087 0.913 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.726 -33.098 -3.378 34.395 hybrid contribution 0.343 1.395 -0.184 1.448 sum 9.069 -31.704 -3.563 33.167 Atomic orbital electron populations 1.69768 1.06153 1.26321 1.58771 1.25448 0.96418 1.00652 1.03204 0.85341 0.77458 0.79787 0.77977 1.21123 1.21186 1.20541 1.19438 0.90892 0.85627 1.42142 0.92129 1.42468 1.05557 1.00464 1.88296 1.20654 0.94611 0.86343 0.92751 0.95735 1.21743 0.98598 0.94267 1.00994 1.21896 1.00609 0.97036 0.96583 1.22484 0.98382 0.88643 0.93397 1.48240 1.18563 1.10983 1.54607 1.18958 0.80913 0.88351 0.78376 1.90798 1.65125 1.46155 1.45163 1.19537 0.93910 0.93378 1.04854 1.21891 1.01203 0.90648 0.95546 1.21567 0.93179 0.98435 0.96242 1.21632 0.94930 0.97019 0.96209 1.17738 0.80588 0.95807 1.04938 1.44993 1.10564 1.07578 1.40295 1.24779 0.92012 0.94393 1.06325 1.24472 1.00308 0.92280 1.04107 1.75100 1.10761 1.13034 1.18148 1.78493 0.99056 1.16399 1.17720 1.20691 0.94084 0.96758 0.98705 1.22289 0.96863 0.82678 1.00014 0.93693 0.78776 0.92137 0.90740 0.92770 0.86496 0.86400 0.88018 0.81639 0.78388 0.79558 0.73151 0.75249 0.87653 0.91329 0.93736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.15 13.06 21.65 0.28 -58.86 16 2 C -0.06 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.97 48.48 29.55 68.60 2.03 50.51 16 4 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 6 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.25 -14.61 9.93 84.03 0.83 -13.77 16 8 H 0.06 3.60 7.83 -2.91 -0.02 3.58 16 9 N -0.73 -37.56 5.12 -322.58 -1.65 -39.21 16 10 C 0.17 6.80 2.92 45.07 0.13 6.94 16 11 H 0.02 1.12 8.08 -2.39 -0.02 1.10 16 12 C -0.12 -3.46 5.35 30.62 0.16 -3.30 16 13 C -0.12 -2.43 6.08 30.67 0.19 -2.24 16 14 C 0.09 1.61 5.37 86.37 0.46 2.07 16 15 N -0.59 -17.65 2.97 -822.28 -2.44 -20.09 16 16 C 0.55 18.10 7.24 86.79 0.63 18.73 16 17 O -0.59 -26.58 16.47 -3.88 -0.06 -26.64 16 18 C -0.11 -2.58 5.00 -20.10 -0.10 -2.68 16 19 C -0.07 -0.80 7.36 22.54 0.17 -0.63 16 20 C -0.08 -0.25 10.02 22.21 0.22 -0.02 16 21 C -0.08 -0.45 9.45 22.43 0.21 -0.23 16 22 C 0.10 1.74 6.66 38.03 0.25 2.00 16 23 N -0.25 -4.96 3.56 -187.15 -0.67 -5.63 16 24 C -0.03 -0.29 10.91 83.37 0.91 0.62 16 25 C -0.06 -0.82 12.05 83.73 1.01 0.19 16 26 N -0.31 -8.21 12.39 -58.24 -0.72 -8.93 16 27 N -0.14 -4.10 12.42 37.02 0.46 -3.64 16 28 C -0.08 -2.06 9.31 22.65 0.21 -1.85 16 29 C 0.11 4.19 6.01 86.36 0.52 4.71 16 30 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 31 H 0.38 20.28 7.80 -92.71 -0.72 19.56 16 32 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.12 1.36 4.55 -2.39 -0.01 1.35 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.17 1.03 7.07 -2.91 -0.02 1.01 16 39 H 0.20 -1.23 8.06 -2.91 -0.02 -1.25 16 40 H 0.19 -0.70 6.77 -2.91 -0.02 -0.71 16 41 H 0.25 -0.70 7.12 -2.91 -0.02 -0.72 16 42 H 0.23 1.28 8.06 -2.91 -0.02 1.26 16 43 H 0.11 3.52 7.70 -2.91 -0.02 3.50 16 44 H 0.07 2.60 8.14 -2.39 -0.02 2.59 16 45 H 0.04 2.15 7.03 -2.38 -0.02 2.13 16 Total: -1.00 -93.37 373.27 3.81 -89.56 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.31 Total: 15.75 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: 6.28 Total: 7.20 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -4.74 Total: -136.37 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.06 Total: -26.64 kcal Atomic # 14 Polarization: 48.48 SS G_CDS: 2.03 Total: 50.51 kcal Total: -93.37 3.81 -89.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072741.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.977 kcal (2) G-P(sol) polarization free energy of solvation -93.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds