Wall clock time and date at job start Sat Apr 11 2020 06:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00253 * 2 1 4 4 H 1.48502 * 109.46980 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47080 * 29.99995 * 3 2 1 6 6 H 1.48502 * 109.47594 * 150.00071 * 3 2 1 7 7 C 1.38818 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99860 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00058 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49628 * 324.93818 * 10 9 7 12 12 C 1.53039 * 109.52350 * 204.85593 * 10 9 7 13 13 C 1.53044 * 109.53571 * 178.66836 * 12 10 9 14 14 C 1.52768 * 109.38539 * 61.24079 * 13 12 10 15 15 N 1.46926 * 109.00495 * 305.58720 * 14 13 12 16 16 C 1.34772 * 120.63209 * 233.58167 * 15 14 13 17 17 O 1.21547 * 120.00420 * 183.51349 * 16 15 14 18 18 C 1.47858 * 119.99626 * 3.50715 * 16 15 14 19 19 C 1.39611 * 120.11608 * 309.42911 * 18 16 15 20 20 C 1.37977 * 119.98562 * 180.27630 * 19 18 16 21 21 C 1.38269 * 120.21166 * 359.48953 * 20 19 18 22 22 C 1.38900 * 120.22856 * 0.51180 * 21 20 19 23 23 N 1.40282 * 119.99142 * 179.76756 * 22 21 20 24 24 C 1.36108 * 125.94519 * 359.97438 * 23 22 21 25 25 C 1.35357 * 106.05435 * 180.02562 * 24 23 22 26 26 N 1.33778 * 106.53597 * 0.02562 * 25 24 23 27 27 N 1.28598 * 109.06207 * 359.73351 * 26 25 24 28 28 C 1.38581 * 120.01331 * 359.74517 * 22 21 20 29 29 C 1.46927 * 118.73598 * 53.31233 * 15 14 13 30 30 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00110 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46152 * 298.68877 * 12 10 9 33 33 H 1.08999 * 109.46241 * 58.64935 * 12 10 9 34 34 H 1.08999 * 109.50052 * 181.31915 * 13 12 10 35 35 H 1.08998 * 109.50009 * 301.38400 * 13 12 10 36 36 H 1.08996 * 109.50865 * 185.70402 * 14 13 12 37 37 H 1.09000 * 109.42653 * 65.41916 * 14 13 12 38 38 H 1.07994 * 120.00964 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.89657 * 179.74780 * 20 19 18 40 40 H 1.08007 * 119.88570 * 180.25560 * 21 20 19 41 41 H 1.08004 * 126.97072 * 0.02562 * 24 23 22 42 42 H 1.08008 * 126.73737 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.10174 * 179.97438 * 28 22 21 44 44 H 1.08996 * 109.58962 * 66.42974 * 29 15 14 45 45 H 1.09004 * 109.58668 * 186.85217 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5658 -3.2064 0.5906 12 6 5.5014 -2.2594 0.6057 13 6 6.2546 -3.5913 0.6363 14 6 6.4228 -4.1117 -0.7901 15 7 5.1036 -4.1787 -1.4336 16 6 4.6749 -5.3222 -2.0036 17 8 3.6096 -5.3477 -2.5883 18 6 5.5006 -6.5458 -1.9178 19 6 6.8508 -6.5059 -2.2707 20 6 7.6174 -7.6506 -2.1950 21 6 7.0555 -8.8368 -1.7603 22 6 5.7131 -8.8866 -1.4069 23 7 5.1470 -10.0938 -0.9711 24 6 5.7974 -11.2833 -0.8495 25 6 4.8770 -12.1691 -0.4017 26 7 3.7294 -11.4937 -0.2735 27 7 3.9230 -10.2684 -0.6128 28 6 4.9331 -7.7437 -1.4844 29 6 4.2582 -2.9770 -1.4386 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 6.0561 -1.5424 0.0005 33 1 5.4005 -1.8760 1.6210 34 1 7.2351 -3.4445 1.0892 35 1 5.6885 -4.3161 1.2214 36 1 6.8679 -5.1063 -0.7647 37 1 7.0682 -3.4344 -1.3494 38 1 7.2939 -5.5804 -2.6075 39 1 8.6607 -7.6190 -2.4723 40 1 7.6615 -9.7287 -1.6991 41 1 6.8369 -11.4803 -1.0662 42 1 5.0375 -13.2158 -0.1896 43 1 3.8891 -7.7809 -1.2104 44 1 4.7235 -2.2054 -2.0519 45 1 3.2755 -3.2232 -1.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001072742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:39 Heat of formation + Delta-G solvation = 127.430363 kcal Electronic energy + Delta-G solvation = -28952.066410 eV Core-core repulsion = 24972.972612 eV Total energy + Delta-G solvation = -3979.093798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.78421 -40.76678 -39.11816 -37.43122 -35.20756 -34.56798 -32.51236 -32.10520 -31.42945 -31.15703 -30.49775 -28.75688 -25.95620 -24.80188 -24.25627 -23.72430 -22.46712 -21.89074 -21.64722 -20.58911 -19.67141 -18.49254 -17.59312 -17.09575 -16.84991 -16.70400 -16.17224 -15.83315 -15.31069 -15.08280 -14.67082 -14.62297 -14.36390 -14.29302 -13.92077 -13.78788 -13.48887 -13.21239 -12.79121 -12.69366 -12.56105 -12.45040 -12.33288 -11.83452 -11.75094 -11.42809 -11.34378 -11.21407 -10.96810 -10.78365 -10.70336 -10.32522 -9.96930 -9.95319 -9.85962 -9.60757 -9.54777 -9.16089 -9.07138 -8.50658 -7.33453 -5.78841 -3.16969 0.06082 0.52825 1.50207 1.79748 2.19574 2.58579 2.90482 3.23462 3.34418 3.36768 3.43147 3.87775 4.00406 4.19916 4.37234 4.47779 4.50843 4.55744 4.68109 4.72524 4.79148 4.82538 4.93990 5.07110 5.09895 5.27439 5.31443 5.38892 5.41694 5.59764 5.60933 5.65754 5.72755 5.74094 5.78789 5.82967 5.95065 5.97507 6.02106 6.17070 6.31475 6.37821 6.53903 6.65998 6.82749 7.43609 7.96161 8.08402 8.14876 8.39542 9.16266 9.87649 10.05658 11.39026 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002521 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.732162 B =11106.088014 C =11993.735387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.131 4.131 14 C 0.096 3.904 15 N -0.597 5.597 16 C 0.552 3.448 17 O -0.521 6.521 18 C -0.094 4.094 19 C -0.083 4.083 20 C -0.101 4.101 21 C -0.103 4.103 22 C 0.117 3.883 23 N -0.242 5.242 24 C -0.051 4.051 25 C -0.044 4.044 26 N -0.261 5.261 27 N -0.071 5.071 28 C -0.053 4.053 29 C 0.092 3.908 30 H 0.260 0.740 31 H 0.363 0.637 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.194 0.806 42 H 0.196 0.804 43 H 0.152 0.848 44 H 0.064 0.936 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.151 -20.024 -2.662 32.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.062 3.938 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.169 4.169 14 C -0.027 4.027 15 N -0.330 5.330 16 C 0.339 3.661 17 O -0.398 6.398 18 C -0.097 4.097 19 C -0.102 4.102 20 C -0.120 4.120 21 C -0.124 4.124 22 C 0.026 3.974 23 N -0.030 5.030 24 C -0.199 4.199 25 C -0.200 4.200 26 N -0.128 5.128 27 N -0.050 5.050 28 C -0.073 4.073 29 C -0.032 4.032 30 H 0.070 0.930 31 H 0.196 0.804 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.211 0.789 42 H 0.213 0.787 43 H 0.170 0.830 44 H 0.082 0.918 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 22.862 -19.452 -2.742 30.142 hybrid contribution 1.734 0.725 -0.180 1.887 sum 24.595 -18.727 -2.921 31.051 Atomic orbital electron populations 1.69710 1.05128 1.25898 1.56884 1.24696 0.95229 0.97223 1.01712 0.86556 0.79177 0.85015 0.77781 1.21021 1.21677 1.20319 1.19097 0.80329 0.94902 1.43661 0.89022 1.42714 1.04163 1.01656 1.89808 1.20461 0.91024 0.89614 0.92724 0.92188 1.21870 0.96661 0.96369 1.01914 1.21807 1.00936 0.98221 0.95966 1.21970 0.84475 1.02119 0.94087 1.48174 1.18221 1.11442 1.55155 1.18160 0.85541 0.82740 0.79708 1.90864 1.22389 1.84421 1.42079 1.19920 0.94312 0.94066 1.01448 1.21566 0.92145 0.99480 0.97028 1.20964 1.00708 0.91110 0.99209 1.21014 0.91909 0.99957 0.99505 1.17473 0.93075 0.83070 1.03798 1.44792 1.08358 1.08003 1.41798 1.23826 1.02077 0.85001 1.08993 1.23700 0.89283 1.01913 1.05080 1.75182 1.23747 0.97570 1.16271 1.78508 0.97546 1.13653 1.15292 1.20973 1.01067 0.89151 0.96156 1.22796 0.95663 0.83891 1.00813 0.92954 0.80430 0.92064 0.91234 0.90775 0.91366 0.89547 0.91069 0.84006 0.83741 0.84372 0.78868 0.78732 0.83048 0.91793 0.88459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.80 27.73 -169.99 -4.71 17.09 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 7 C -0.25 -7.04 10.41 -15.06 -0.16 -7.19 16 8 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 9 N -0.74 -17.04 4.93 -53.31 -0.26 -17.30 16 10 C 0.17 3.20 2.92 -67.81 -0.20 3.00 16 11 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 12 C -0.13 -1.80 5.36 -26.69 -0.14 -1.95 16 13 C -0.13 -1.36 6.06 -26.83 -0.16 -1.52 16 14 C 0.10 0.93 5.34 -3.93 -0.02 0.91 16 15 N -0.60 -8.40 2.98 -174.14 -0.52 -8.92 16 16 C 0.55 8.46 7.24 -12.33 -0.09 8.37 16 17 O -0.52 -10.48 16.47 5.32 0.09 -10.39 16 18 C -0.09 -1.06 5.00 -104.99 -0.52 -1.58 16 19 C -0.08 -0.61 7.36 -39.16 -0.29 -0.90 16 20 C -0.10 -0.50 10.02 -39.67 -0.40 -0.90 16 21 C -0.10 -0.60 9.45 -39.32 -0.37 -0.97 16 22 C 0.12 1.11 6.67 -83.62 -0.56 0.56 16 23 N -0.24 -2.55 3.56 -10.51 -0.04 -2.59 16 24 C -0.05 -0.36 10.91 -16.68 -0.18 -0.55 16 25 C -0.04 -0.37 12.05 -17.73 -0.21 -0.58 16 26 N -0.26 -3.40 12.39 30.24 0.37 -3.02 16 27 N -0.07 -0.99 12.41 60.35 0.75 -0.24 16 28 C -0.05 -0.63 9.30 -39.00 -0.36 -0.99 16 29 C 0.09 1.63 6.01 -3.71 -0.02 1.61 16 30 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 31 H 0.36 8.07 5.66 -40.82 -0.23 7.84 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.09 0.65 4.56 -51.93 -0.24 0.41 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.14 0.79 7.07 -52.49 -0.37 0.42 16 39 H 0.14 0.25 8.06 -52.49 -0.42 -0.17 16 40 H 0.14 0.35 6.75 -52.48 -0.35 0.00 16 41 H 0.19 0.44 7.10 -52.48 -0.37 0.07 16 42 H 0.20 0.84 8.06 -52.48 -0.42 0.42 16 43 H 0.15 2.12 7.69 -52.48 -0.40 1.71 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.10 2.09 7.03 -51.93 -0.36 1.73 16 LS Contribution 370.06 15.07 5.58 5.58 Total: -1.00 -37.48 370.06 -7.48 -44.96 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: -5.73 Total: 5.99 kcal Atomic # 6 Polarization: 1.24 SS G_CDS: -3.79 Total: -2.55 kcal Atomic # 7 Polarization: -61.76 SS G_CDS: 1.08 Total: -60.68 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.48 -7.48 -44.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.392 kcal (2) G-P(sol) polarization free energy of solvation -37.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds