Wall clock time and date at job start Sat Apr 11 2020 06:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86790 * 120.00253 * 2 1 4 4 H 1.48502 * 109.46980 * 270.00323 * 3 2 1 5 5 H 1.48503 * 109.47080 * 29.99995 * 3 2 1 6 6 H 1.48502 * 109.47594 * 150.00071 * 3 2 1 7 7 C 1.38818 * 119.99653 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99860 * 0.02562 * 7 2 1 9 9 N 1.36933 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.46498 * 120.00058 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49628 * 324.93818 * 10 9 7 12 12 C 1.53039 * 109.52350 * 204.85593 * 10 9 7 13 13 C 1.53044 * 109.53571 * 178.66836 * 12 10 9 14 14 C 1.52768 * 109.38539 * 61.24079 * 13 12 10 15 15 N 1.46926 * 109.00495 * 305.58720 * 14 13 12 16 16 C 1.34772 * 120.63209 * 233.58167 * 15 14 13 17 17 O 1.21547 * 120.00420 * 183.51349 * 16 15 14 18 18 C 1.47858 * 119.99626 * 3.50715 * 16 15 14 19 19 C 1.39611 * 120.11608 * 309.42911 * 18 16 15 20 20 C 1.37977 * 119.98562 * 180.27630 * 19 18 16 21 21 C 1.38269 * 120.21166 * 359.48953 * 20 19 18 22 22 C 1.38900 * 120.22856 * 0.51180 * 21 20 19 23 23 N 1.40282 * 119.99142 * 179.76756 * 22 21 20 24 24 C 1.36108 * 125.94519 * 359.97438 * 23 22 21 25 25 C 1.35357 * 106.05435 * 180.02562 * 24 23 22 26 26 N 1.33778 * 106.53597 * 0.02562 * 25 24 23 27 27 N 1.28598 * 109.06207 * 359.73351 * 26 25 24 28 28 C 1.38581 * 120.01331 * 359.74517 * 22 21 20 29 29 C 1.46927 * 118.73598 * 53.31233 * 15 14 13 30 30 H 0.97002 * 119.99927 * 359.97438 * 1 2 3 31 31 H 0.97004 * 120.00110 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.46152 * 298.68877 * 12 10 9 33 33 H 1.08999 * 109.46241 * 58.64935 * 12 10 9 34 34 H 1.08999 * 109.50052 * 181.31915 * 13 12 10 35 35 H 1.08998 * 109.50009 * 301.38400 * 13 12 10 36 36 H 1.08996 * 109.50865 * 185.70402 * 14 13 12 37 37 H 1.09000 * 109.42653 * 65.41916 * 14 13 12 38 38 H 1.07994 * 120.00964 * 359.97438 * 19 18 16 39 39 H 1.08002 * 119.89657 * 179.74780 * 20 19 18 40 40 H 1.08007 * 119.88570 * 180.25560 * 21 20 19 41 41 H 1.08004 * 126.97072 * 0.02562 * 24 23 22 42 42 H 1.08008 * 126.73737 * 180.02562 * 25 24 23 43 43 H 1.08003 * 120.10174 * 179.97438 * 28 22 21 44 44 H 1.08996 * 109.58962 * 66.42974 * 29 15 14 45 45 H 1.09004 * 109.58668 * 186.85217 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1120 -2.4710 0.0000 11 1 3.5658 -3.2064 0.5906 12 6 5.5014 -2.2594 0.6057 13 6 6.2546 -3.5913 0.6363 14 6 6.4228 -4.1117 -0.7901 15 7 5.1036 -4.1787 -1.4336 16 6 4.6749 -5.3222 -2.0036 17 8 3.6096 -5.3477 -2.5883 18 6 5.5006 -6.5458 -1.9178 19 6 6.8508 -6.5059 -2.2707 20 6 7.6174 -7.6506 -2.1950 21 6 7.0555 -8.8368 -1.7603 22 6 5.7131 -8.8866 -1.4069 23 7 5.1470 -10.0938 -0.9711 24 6 5.7974 -11.2833 -0.8495 25 6 4.8770 -12.1691 -0.4017 26 7 3.7294 -11.4937 -0.2735 27 7 3.9230 -10.2684 -0.6128 28 6 4.9331 -7.7437 -1.4844 29 6 4.2582 -2.9770 -1.4386 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 -0.0004 32 1 6.0561 -1.5424 0.0005 33 1 5.4005 -1.8760 1.6210 34 1 7.2351 -3.4445 1.0892 35 1 5.6885 -4.3161 1.2214 36 1 6.8679 -5.1063 -0.7647 37 1 7.0682 -3.4344 -1.3494 38 1 7.2939 -5.5804 -2.6075 39 1 8.6607 -7.6190 -2.4723 40 1 7.6615 -9.7287 -1.6991 41 1 6.8369 -11.4803 -1.0662 42 1 5.0375 -13.2158 -0.1896 43 1 3.8891 -7.7809 -1.2104 44 1 4.7235 -2.2054 -2.0519 45 1 3.2755 -3.2232 -1.8409 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001072742.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:38 Heat of formation + Delta-G solvation = 98.738095 kcal Electronic energy + Delta-G solvation = -28953.310600 eV Core-core repulsion = 24972.972612 eV Total energy + Delta-G solvation = -3980.337988 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.48816 -41.76652 -39.99727 -38.75721 -36.48100 -35.71158 -34.06630 -32.98964 -32.83185 -31.90566 -31.32174 -30.22998 -27.04262 -25.82475 -25.37348 -24.88502 -23.30331 -23.16508 -22.41821 -21.82390 -20.71247 -19.64653 -19.38394 -17.99063 -17.57063 -17.43985 -17.19036 -16.80904 -16.65569 -16.21866 -15.92723 -15.56584 -15.49287 -15.20002 -15.02138 -14.82147 -14.77410 -14.37676 -14.13876 -13.97808 -13.88032 -13.40117 -13.11350 -12.99307 -12.97838 -12.59674 -12.53384 -12.24057 -12.09632 -12.06009 -11.95869 -11.87344 -11.75774 -11.42574 -11.22894 -11.02644 -10.52088 -10.25095 -9.90400 -9.73033 -9.31967 -8.07635 -5.44850 -0.55088 -0.16765 0.88662 1.15879 1.34265 1.40861 1.48007 1.51384 1.51685 1.87253 2.44924 2.51183 3.17831 3.22752 3.40384 3.48713 3.63849 3.69050 3.88253 3.92850 3.98810 4.05077 4.08901 4.19272 4.20906 4.22924 4.28056 4.31632 4.57628 4.59377 4.65761 4.70392 4.80905 4.87066 4.97028 5.03265 5.06464 5.11236 5.14880 5.23866 5.33217 5.39163 5.41738 5.46426 5.70079 5.77934 6.15708 6.29847 6.96457 7.01683 7.35839 7.72805 7.96393 9.14370 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017051 B = 0.002521 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.732162 B =11106.088014 C =11993.735387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.240 1.240 7 C -0.242 4.242 8 H 0.039 0.961 9 N -0.742 5.742 10 C 0.168 3.832 11 H 0.022 0.978 12 C -0.121 4.121 13 C -0.125 4.125 14 C 0.090 3.910 15 N -0.593 5.593 16 C 0.544 3.456 17 O -0.592 6.592 18 C -0.113 4.113 19 C -0.073 4.073 20 C -0.076 4.076 21 C -0.078 4.078 22 C 0.100 3.900 23 N -0.247 5.247 24 C -0.027 4.027 25 C -0.055 4.055 26 N -0.306 5.306 27 N -0.141 5.141 28 C -0.083 4.083 29 C 0.104 3.896 30 H 0.260 0.740 31 H 0.373 0.627 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.121 0.879 35 H 0.050 0.950 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.169 0.831 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.254 0.746 42 H 0.231 0.769 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.592 -20.623 -2.973 39.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.258 4.258 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.222 1.222 6 H -0.164 1.164 7 C -0.372 4.372 8 H 0.057 0.943 9 N -0.385 5.385 10 C 0.059 3.941 11 H 0.040 0.960 12 C -0.159 4.159 13 C -0.163 4.163 14 C -0.030 4.030 15 N -0.325 5.325 16 C 0.333 3.667 17 O -0.473 6.473 18 C -0.117 4.117 19 C -0.091 4.091 20 C -0.094 4.094 21 C -0.098 4.098 22 C 0.009 3.991 23 N -0.035 5.035 24 C -0.175 4.175 25 C -0.212 4.212 26 N -0.171 5.171 27 N -0.118 5.118 28 C -0.105 4.105 29 C -0.021 4.021 30 H 0.068 0.932 31 H 0.207 0.793 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.139 0.861 35 H 0.069 0.931 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.186 0.814 39 H 0.217 0.783 40 H 0.205 0.795 41 H 0.270 0.730 42 H 0.248 0.752 43 H 0.121 0.879 44 H 0.098 0.902 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 31.382 -20.073 -3.024 37.375 hybrid contribution -0.844 0.692 -0.093 1.096 sum 30.538 -19.381 -3.117 36.303 Atomic orbital electron populations 1.69937 1.07615 1.27013 1.59030 1.25702 0.96252 1.01972 1.01891 0.85239 0.78823 0.78303 0.78319 1.20143 1.22183 1.16436 1.18930 0.82854 0.93027 1.42432 0.94300 1.42597 1.02215 1.03736 1.89972 1.20643 0.93455 0.86971 0.93037 0.95972 1.21807 0.93328 0.99246 1.01507 1.21835 1.02378 0.95488 0.96602 1.22441 0.82132 1.04891 0.93557 1.48225 1.19470 1.09846 1.54926 1.18985 0.85108 0.84204 0.78412 1.90815 1.25698 1.85572 1.45251 1.19531 0.95924 0.91396 1.04824 1.21899 0.89782 1.01957 0.95498 1.21585 1.02515 0.89112 0.96150 1.21643 0.89743 1.02252 0.96164 1.17755 0.94520 0.81898 1.04907 1.45009 1.07924 1.09312 1.41206 1.24780 1.03908 0.82857 1.05912 1.24480 0.88223 1.03703 1.04777 1.75100 1.26502 0.98077 1.17414 1.78509 1.00030 1.14457 1.18824 1.20692 0.99637 0.91284 0.98843 1.22255 0.94134 0.85881 0.99824 0.93173 0.79305 0.89659 0.91458 0.86076 0.93114 0.86546 0.87514 0.81396 0.78264 0.79520 0.73048 0.75213 0.87914 0.90240 0.94225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -66.19 13.97 21.65 0.30 -65.88 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 3 Si 0.97 45.73 27.73 68.60 1.90 47.64 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.24 -9.82 6.52 99.48 0.65 -9.17 16 7 C -0.24 -14.56 10.41 84.04 0.88 -13.68 16 8 H 0.04 2.69 8.06 -2.91 -0.02 2.66 16 9 N -0.74 -35.14 4.93 -322.57 -1.59 -36.73 16 10 C 0.17 6.53 2.92 45.07 0.13 6.67 16 11 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 12 C -0.12 -3.08 5.36 30.62 0.16 -2.92 16 13 C -0.12 -2.17 6.06 30.53 0.19 -1.98 16 14 C 0.09 1.41 5.34 86.22 0.46 1.87 16 15 N -0.59 -17.08 2.98 -823.12 -2.45 -19.53 16 16 C 0.54 18.12 7.24 86.79 0.63 18.75 16 17 O -0.59 -27.24 16.47 -3.86 -0.06 -27.31 16 18 C -0.11 -2.58 5.00 -20.10 -0.10 -2.68 16 19 C -0.07 -0.74 7.36 22.54 0.17 -0.57 16 20 C -0.08 -0.21 10.02 22.22 0.22 0.01 16 21 C -0.08 -0.44 9.45 22.44 0.21 -0.23 16 22 C 0.10 1.77 6.67 38.03 0.25 2.03 16 23 N -0.25 -5.09 3.56 -187.15 -0.67 -5.76 16 24 C -0.03 -0.29 10.91 83.36 0.91 0.62 16 25 C -0.06 -0.84 12.05 83.73 1.01 0.17 16 26 N -0.31 -8.45 12.39 -58.24 -0.72 -9.17 16 27 N -0.14 -4.27 12.41 37.02 0.46 -3.81 16 28 C -0.08 -2.16 9.30 22.65 0.21 -1.95 16 29 C 0.10 3.93 6.01 86.36 0.52 4.45 16 30 H 0.26 16.43 8.31 -92.71 -0.77 15.66 16 31 H 0.37 16.11 5.66 -92.71 -0.52 15.59 16 32 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 1.19 4.56 -2.39 -0.01 1.18 16 37 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.17 0.85 7.07 -2.91 -0.02 0.83 16 39 H 0.20 -1.37 8.06 -2.91 -0.02 -1.40 16 40 H 0.19 -0.73 6.75 -2.91 -0.02 -0.75 16 41 H 0.25 -0.69 7.10 -2.91 -0.02 -0.71 16 42 H 0.23 1.37 8.06 -2.91 -0.02 1.34 16 43 H 0.10 3.56 7.69 -2.91 -0.02 3.53 16 44 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.04 1.93 7.03 -2.39 -0.02 1.91 16 Total: -1.00 -101.78 370.06 3.93 -97.84 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: 0.45 Total: 15.78 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 6.31 Total: 6.93 kcal Atomic # 7 Polarization: -136.22 SS G_CDS: -4.67 Total: -140.88 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.06 Total: -27.31 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.90 Total: 47.64 kcal Total: -101.78 3.93 -97.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001072742.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.582 kcal (2) G-P(sol) polarization free energy of solvation -101.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds