Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48505 * 109.47286 * 269.99553 * 3 2 1 5 5 H 1.48504 * 109.47229 * 29.99630 * 3 2 1 6 6 H 1.48496 * 109.47031 * 149.99676 * 3 2 1 7 7 C 1.38806 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00322 * 0.02562 * 7 2 1 9 9 N 1.36947 * 119.99659 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99765 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49842 * 325.00314 * 10 9 7 12 12 C 1.53038 * 109.52455 * 204.91812 * 10 9 7 13 13 C 1.53038 * 109.53629 * 178.66601 * 12 10 9 14 14 C 1.53188 * 109.31426 * 61.37020 * 13 12 10 15 15 N 1.46926 * 108.77362 * 305.36063 * 14 13 12 16 16 C 1.34773 * 120.63516 * 233.58930 * 15 14 13 17 17 O 1.21578 * 120.00479 * 174.23886 * 16 15 14 18 18 C 1.47631 * 119.99488 * 354.23055 * 16 15 14 19 19 C 1.39630 * 120.18701 * 303.77723 * 18 16 15 20 20 C 1.37866 * 119.91160 * 179.97438 * 19 18 16 21 21 C 1.38502 * 120.30237 * 359.97438 * 20 19 18 22 22 C 1.38099 * 120.38556 * 0.04077 * 21 20 19 23 23 C 1.38721 * 120.07751 * 359.70034 * 22 21 20 24 24 N 1.39808 * 120.15092 * 180.29186 * 23 22 21 25 25 C 1.36322 * 126.87076 * 4.31512 * 24 23 22 26 26 C 1.34962 * 106.77757 * 179.84397 * 25 24 23 27 27 N 1.33374 * 109.01941 * 0.42371 * 26 25 24 28 28 N 1.28766 * 109.92827 * 359.73450 * 27 26 25 29 29 C 1.46929 * 118.73752 * 53.60943 * 15 14 13 30 30 H 0.97002 * 120.00447 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00111 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46140 * 298.68940 * 12 10 9 33 33 H 1.08999 * 109.45478 * 58.64546 * 12 10 9 34 34 H 1.09003 * 109.50040 * 301.41422 * 13 12 10 35 35 H 1.09008 * 109.52228 * 181.33469 * 13 12 10 36 36 H 1.08995 * 109.59011 * 185.57666 * 14 13 12 37 37 H 1.08996 * 109.58582 * 65.14599 * 14 13 12 38 38 H 1.08000 * 120.04394 * 0.02562 * 19 18 16 39 39 H 1.08002 * 119.84606 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.80728 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.96337 * 179.97438 * 22 21 20 42 42 H 1.08002 * 126.61131 * 0.02562 * 25 24 23 43 43 H 1.08005 * 125.48956 * 180.12326 * 26 25 24 44 44 H 1.09003 * 109.58452 * 186.60560 * 29 15 14 45 45 H 1.09001 * 109.70586 * 66.25171 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5650 -3.2068 0.5900 12 6 5.5006 -2.2597 0.6094 13 6 6.2537 -3.5916 0.6400 14 6 6.4267 -4.1089 -0.7915 15 7 5.1063 -4.1770 -1.4325 16 6 4.6790 -5.3197 -2.0051 17 8 3.5459 -5.3955 -2.4392 18 6 5.5870 -6.4794 -2.1054 19 6 6.8226 -6.3507 -2.7429 20 6 7.6663 -7.4373 -2.8328 21 6 7.2945 -8.6574 -2.2931 22 6 6.0752 -8.7987 -1.6602 23 6 5.2162 -7.7145 -1.5559 24 7 3.9841 -7.8543 -0.9102 25 6 3.5203 -8.9614 -0.2639 26 6 2.2954 -8.6511 0.2103 27 7 2.0002 -7.3973 -0.1355 28 7 2.9751 -6.8849 -0.8028 29 6 4.2608 -2.9753 -1.4377 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0014 32 1 6.0563 -1.5421 0.0058 33 1 5.3977 -1.8772 1.6248 34 1 5.6863 -4.3172 1.2230 35 1 7.2335 -3.4457 1.0950 36 1 6.8737 -5.1027 -0.7694 37 1 7.0696 -3.4291 -1.3505 38 1 7.1173 -5.4009 -3.1641 39 1 8.6220 -7.3363 -3.3258 40 1 7.9618 -9.5032 -2.3678 41 1 5.7920 -9.7534 -1.2421 42 1 4.0351 -9.9040 -0.1506 43 1 1.6553 -9.3132 0.7745 44 1 3.2789 -3.2213 -1.8420 45 1 4.7248 -2.2021 -2.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001081721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 138.015102 kcal Electronic energy + Delta-G solvation = -30255.298052 eV Core-core repulsion = 26276.663242 eV Total energy + Delta-G solvation = -3978.634809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25211 -40.43771 -38.88674 -37.16500 -34.78443 -34.44714 -32.45811 -31.72345 -31.21444 -30.75597 -29.87750 -28.65171 -25.73948 -24.44587 -23.92719 -23.66260 -21.80698 -21.69822 -21.45365 -20.38098 -19.36630 -18.38192 -17.48932 -17.32332 -16.11833 -15.98955 -15.67621 -15.55512 -15.13616 -14.91910 -14.51171 -14.42852 -14.23066 -14.14485 -13.72602 -13.66698 -13.30788 -13.10379 -12.77376 -12.56346 -12.38507 -12.33577 -11.96555 -11.60769 -11.32027 -11.29259 -11.16349 -11.06661 -10.87937 -10.67514 -10.56659 -10.22916 -9.83390 -9.74642 -9.49849 -9.48346 -9.33168 -9.02536 -8.71568 -8.27607 -7.21459 -5.68243 -3.05761 0.19958 0.63145 1.68123 2.01859 2.57009 2.84031 3.08291 3.38850 3.41600 3.43695 3.49481 4.05152 4.21078 4.36653 4.48844 4.57465 4.64683 4.79126 4.83486 4.88287 4.94931 5.05381 5.07554 5.18429 5.24052 5.31310 5.42066 5.51477 5.53976 5.70639 5.75314 5.81467 5.85888 5.88939 5.95656 6.05927 6.08744 6.12316 6.16030 6.28349 6.45071 6.62506 6.74989 6.82982 6.99906 7.66910 8.09328 8.18073 8.45446 8.50902 9.27707 9.98680 10.17135 11.49893 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003601 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.700171 B = 7772.764872 C = 9006.267957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.883 3.117 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.093 0.907 9 N -0.742 5.742 10 C 0.174 3.826 11 H 0.060 0.940 12 C -0.128 4.128 13 C -0.128 4.128 14 C 0.107 3.893 15 N -0.601 5.601 16 C 0.551 3.449 17 O -0.490 6.490 18 C -0.111 4.111 19 C -0.069 4.069 20 C -0.124 4.124 21 C -0.082 4.082 22 C -0.135 4.135 23 C 0.183 3.817 24 N -0.334 5.334 25 C 0.006 3.994 26 C -0.071 4.071 27 N -0.233 5.233 28 N 0.004 4.996 29 C 0.097 3.903 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.192 0.808 43 H 0.188 0.812 44 H 0.097 0.903 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.258 -21.606 -2.374 31.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.167 4.167 13 C -0.167 4.167 14 C -0.017 4.017 15 N -0.335 5.335 16 C 0.336 3.664 17 O -0.363 6.363 18 C -0.117 4.117 19 C -0.088 4.088 20 C -0.143 4.143 21 C -0.101 4.101 22 C -0.156 4.156 23 C 0.089 3.911 24 N -0.116 5.116 25 C -0.142 4.142 26 C -0.224 4.224 27 N -0.105 5.105 28 N 0.025 4.975 29 C -0.027 4.027 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.158 0.842 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.209 0.791 43 H 0.205 0.795 44 H 0.115 0.885 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.831 -20.252 -2.908 29.199 hybrid contribution 0.982 0.070 0.230 1.011 sum 21.814 -20.182 -2.678 29.838 Atomic orbital electron populations 1.69714 1.05088 1.25684 1.57370 1.24675 0.95196 0.97062 1.02013 0.86575 0.79183 0.85194 0.77711 1.21112 1.21775 1.20373 1.19149 0.80357 0.94961 1.42963 0.88895 1.42721 1.04160 1.01660 1.89895 1.20443 0.90795 0.89456 0.92978 0.92208 1.21857 0.96839 0.96239 1.01753 1.21855 1.00619 0.98215 0.96029 1.21768 0.84653 1.01427 0.93827 1.48060 1.18026 1.11532 1.55919 1.17889 0.86577 0.82160 0.79758 1.90883 1.17628 1.81365 1.46407 1.19889 0.96328 0.93417 1.02048 1.21270 0.91034 0.99980 0.96483 1.21218 1.00330 0.92492 1.00257 1.21119 0.95089 0.98075 0.95773 1.20844 0.94689 0.97225 1.02887 1.17463 0.83224 0.94317 0.96140 1.48218 1.13606 1.11824 1.38001 1.23460 0.97631 0.93776 0.99346 1.23295 0.96568 0.94752 1.07764 1.74539 1.19774 1.08501 1.07655 1.82992 0.90752 1.08640 1.15077 1.22659 0.95739 0.83782 1.00501 0.93093 0.80571 0.92146 0.91423 0.91709 0.91032 0.90507 0.91429 0.84211 0.84553 0.84425 0.84531 0.79118 0.79480 0.88457 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.37 13.97 55.49 0.78 -29.59 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.55 27.74 -169.99 -4.71 17.84 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 7 C -0.24 -7.21 10.41 -15.06 -0.16 -7.37 16 8 H 0.09 3.03 8.06 -52.49 -0.42 2.61 16 9 N -0.74 -18.09 4.93 -53.31 -0.26 -18.36 16 10 C 0.17 3.53 2.92 -67.81 -0.20 3.33 16 11 H 0.06 1.38 8.08 -51.93 -0.42 0.96 16 12 C -0.13 -1.99 5.36 -26.69 -0.14 -2.14 16 13 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 14 C 0.11 1.24 5.70 -3.71 -0.02 1.22 16 15 N -0.60 -9.57 2.97 -173.96 -0.52 -10.09 16 16 C 0.55 9.45 5.93 -12.43 -0.07 9.37 16 17 O -0.49 -10.72 13.75 5.30 0.07 -10.65 16 18 C -0.11 -1.42 4.52 -104.82 -0.47 -1.90 16 19 C -0.07 -0.60 7.90 -39.20 -0.31 -0.91 16 20 C -0.12 -0.74 10.02 -39.62 -0.40 -1.14 16 21 C -0.08 -0.45 10.03 -39.54 -0.40 -0.84 16 22 C -0.14 -1.00 9.47 -39.45 -0.37 -1.38 16 23 C 0.18 2.18 6.70 -83.32 -0.56 1.62 16 24 N -0.33 -4.73 3.84 -10.32 -0.04 -4.77 16 25 C 0.01 0.06 10.92 -16.72 -0.18 -0.12 16 26 C -0.07 -0.87 11.86 -18.05 -0.21 -1.09 16 27 N -0.23 -4.26 12.33 30.09 0.37 -3.89 16 28 N 0.00 0.07 9.39 60.35 0.57 0.64 16 29 C 0.10 1.88 6.03 -3.71 -0.02 1.86 16 30 H 0.26 8.01 8.31 -40.82 -0.34 7.67 16 31 H 0.36 8.48 5.66 -40.82 -0.23 8.25 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.08 0.76 5.48 -51.93 -0.28 0.47 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.14 1.06 7.91 -52.49 -0.41 0.64 16 39 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.14 0.62 6.86 -52.48 -0.36 0.26 16 42 H 0.19 0.90 7.19 -52.49 -0.38 0.52 16 43 H 0.19 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.10 2.29 7.00 -51.93 -0.36 1.93 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -39.71 366.57 -7.85 -47.56 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -5.85 Total: 6.90 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.78 Total: -1.13 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: 0.89 Total: -66.06 kcal Atomic # 8 Polarization: -10.72 SS G_CDS: 0.07 Total: -10.65 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.71 Total: 17.84 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.71 -7.85 -47.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001081721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.579 kcal (2) G-P(sol) polarization free energy of solvation -39.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds