Wall clock time and date at job start Sat Apr 11 2020 06:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99760 * 2 1 4 4 H 1.48505 * 109.47286 * 269.99553 * 3 2 1 5 5 H 1.48504 * 109.47229 * 29.99630 * 3 2 1 6 6 H 1.48496 * 109.47031 * 149.99676 * 3 2 1 7 7 C 1.38806 * 120.00001 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00322 * 0.02562 * 7 2 1 9 9 N 1.36947 * 119.99659 * 180.02562 * 7 2 1 10 10 C 1.46502 * 119.99765 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.49842 * 325.00314 * 10 9 7 12 12 C 1.53038 * 109.52455 * 204.91812 * 10 9 7 13 13 C 1.53038 * 109.53629 * 178.66601 * 12 10 9 14 14 C 1.53188 * 109.31426 * 61.37020 * 13 12 10 15 15 N 1.46926 * 108.77362 * 305.36063 * 14 13 12 16 16 C 1.34773 * 120.63516 * 233.58930 * 15 14 13 17 17 O 1.21578 * 120.00479 * 174.23886 * 16 15 14 18 18 C 1.47631 * 119.99488 * 354.23055 * 16 15 14 19 19 C 1.39630 * 120.18701 * 303.77723 * 18 16 15 20 20 C 1.37866 * 119.91160 * 179.97438 * 19 18 16 21 21 C 1.38502 * 120.30237 * 359.97438 * 20 19 18 22 22 C 1.38099 * 120.38556 * 0.04077 * 21 20 19 23 23 C 1.38721 * 120.07751 * 359.70034 * 22 21 20 24 24 N 1.39808 * 120.15092 * 180.29186 * 23 22 21 25 25 C 1.36322 * 126.87076 * 4.31512 * 24 23 22 26 26 C 1.34962 * 106.77757 * 179.84397 * 25 24 23 27 27 N 1.33374 * 109.01941 * 0.42371 * 26 25 24 28 28 N 1.28766 * 109.92827 * 359.73450 * 27 26 25 29 29 C 1.46929 * 118.73752 * 53.60943 * 15 14 13 30 30 H 0.97002 * 120.00447 * 0.02562 * 1 2 3 31 31 H 0.96992 * 120.00111 * 0.02562 * 9 7 2 32 32 H 1.09002 * 109.46140 * 298.68940 * 12 10 9 33 33 H 1.08999 * 109.45478 * 58.64546 * 12 10 9 34 34 H 1.09003 * 109.50040 * 301.41422 * 13 12 10 35 35 H 1.09008 * 109.52228 * 181.33469 * 13 12 10 36 36 H 1.08995 * 109.59011 * 185.57666 * 14 13 12 37 37 H 1.08996 * 109.58582 * 65.14599 * 14 13 12 38 38 H 1.08000 * 120.04394 * 0.02562 * 19 18 16 39 39 H 1.08002 * 119.84606 * 180.02562 * 20 19 18 40 40 H 1.08001 * 119.80728 * 180.02562 * 21 20 19 41 41 H 1.08007 * 119.96337 * 179.97438 * 22 21 20 42 42 H 1.08002 * 126.61131 * 0.02562 * 25 24 23 43 43 H 1.08005 * 125.48956 * 180.12326 * 26 25 24 44 44 H 1.09003 * 109.58452 * 186.60560 * 29 15 14 45 45 H 1.09001 * 109.70586 * 66.25171 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5650 -3.2068 0.5900 12 6 5.5006 -2.2597 0.6094 13 6 6.2537 -3.5916 0.6400 14 6 6.4267 -4.1089 -0.7915 15 7 5.1063 -4.1770 -1.4325 16 6 4.6790 -5.3197 -2.0051 17 8 3.5459 -5.3955 -2.4392 18 6 5.5870 -6.4794 -2.1054 19 6 6.8226 -6.3507 -2.7429 20 6 7.6663 -7.4373 -2.8328 21 6 7.2945 -8.6574 -2.2931 22 6 6.0752 -8.7987 -1.6602 23 6 5.2162 -7.7145 -1.5559 24 7 3.9841 -7.8543 -0.9102 25 6 3.5203 -8.9614 -0.2639 26 6 2.2954 -8.6511 0.2103 27 7 2.0002 -7.3973 -0.1355 28 7 2.9751 -6.8849 -0.8028 29 6 4.2608 -2.9753 -1.4377 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3620 0.0014 32 1 6.0563 -1.5421 0.0058 33 1 5.3977 -1.8772 1.6248 34 1 5.6863 -4.3172 1.2230 35 1 7.2335 -3.4457 1.0950 36 1 6.8737 -5.1027 -0.7694 37 1 7.0696 -3.4291 -1.3505 38 1 7.1173 -5.4009 -3.1641 39 1 8.6220 -7.3363 -3.3258 40 1 7.9618 -9.5032 -2.3678 41 1 5.7920 -9.7534 -1.2421 42 1 4.0351 -9.9040 -0.1506 43 1 1.6553 -9.3132 0.7745 44 1 3.2789 -3.2213 -1.8420 45 1 4.7248 -2.2021 -2.0501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001081721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:41 Heat of formation + Delta-G solvation = 106.862027 kcal Electronic energy + Delta-G solvation = -30256.648951 eV Core-core repulsion = 26276.663242 eV Total energy + Delta-G solvation = -3979.985708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.22562 -41.50857 -39.84996 -38.56424 -36.37602 -35.52163 -34.09836 -32.97334 -32.61478 -31.65274 -30.73659 -30.28654 -26.92101 -25.74663 -25.27820 -24.68146 -23.19668 -22.87484 -22.32162 -21.76202 -20.53016 -19.63899 -19.22116 -18.40647 -17.25656 -16.97416 -16.70096 -16.59124 -16.34519 -16.13081 -15.95587 -15.59750 -15.37426 -15.22039 -15.01628 -14.78325 -14.68990 -14.33747 -14.10668 -13.97209 -13.83247 -13.34439 -13.12413 -12.97957 -12.63404 -12.57132 -12.24601 -12.21886 -12.12446 -12.09923 -11.94117 -11.89807 -11.80665 -11.44752 -11.17849 -10.91476 -10.40451 -10.05461 -9.81069 -9.51745 -9.27138 -8.07085 -5.44778 -0.58525 0.03833 0.87653 1.20633 1.32763 1.40317 1.47426 1.55988 1.69868 2.00853 2.44623 2.64529 3.22325 3.29780 3.39311 3.49183 3.59020 3.87451 3.89965 3.98406 4.04181 4.06471 4.12643 4.21997 4.24452 4.28617 4.28813 4.36645 4.52946 4.58626 4.64328 4.78709 4.80579 4.85072 4.96453 5.03192 5.07544 5.20343 5.27986 5.30893 5.36478 5.36950 5.50743 5.61008 5.71559 5.91479 6.16176 6.43981 7.00960 7.13070 7.25044 7.71600 7.97363 9.15440 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014062 B = 0.003601 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.700171 B = 7772.764872 C = 9006.267957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.066 4.066 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.242 1.242 7 C -0.241 4.241 8 H 0.033 0.967 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.011 0.989 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.103 3.897 15 N -0.602 5.602 16 C 0.544 3.456 17 O -0.557 6.557 18 C -0.141 4.141 19 C -0.072 4.072 20 C -0.104 4.104 21 C -0.064 4.064 22 C -0.122 4.122 23 C 0.140 3.860 24 N -0.331 5.331 25 C 0.034 3.966 26 C -0.088 4.088 27 N -0.297 5.297 28 N -0.079 5.079 29 C 0.112 3.888 30 H 0.260 0.740 31 H 0.373 0.627 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.149 0.851 39 H 0.177 0.823 40 H 0.185 0.815 41 H 0.172 0.828 42 H 0.257 0.743 43 H 0.221 0.779 44 H 0.034 0.966 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.564 -23.617 -2.530 37.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.257 4.257 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.372 4.372 8 H 0.051 0.949 9 N -0.385 5.385 10 C 0.064 3.936 11 H 0.029 0.971 12 C -0.157 4.157 13 C -0.160 4.160 14 C -0.018 4.018 15 N -0.336 5.336 16 C 0.332 3.668 17 O -0.434 6.434 18 C -0.147 4.147 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.082 4.082 22 C -0.143 4.143 23 C 0.047 3.953 24 N -0.114 5.114 25 C -0.115 4.115 26 C -0.243 4.243 27 N -0.166 5.166 28 N -0.056 5.056 29 C -0.013 4.013 30 H 0.069 0.931 31 H 0.207 0.793 32 H 0.105 0.895 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.167 0.833 39 H 0.195 0.805 40 H 0.202 0.798 41 H 0.189 0.811 42 H 0.272 0.728 43 H 0.238 0.762 44 H 0.053 0.947 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 28.238 -22.262 -3.065 36.089 hybrid contribution -1.211 0.390 0.238 1.294 sum 27.027 -21.872 -2.827 34.884 Atomic orbital electron populations 1.69950 1.07653 1.27021 1.59062 1.25709 0.96276 1.01944 1.01769 0.85204 0.78748 0.78103 0.78395 1.20004 1.21868 1.16564 1.18907 0.82851 0.92930 1.42537 0.94935 1.42563 1.02205 1.03612 1.90107 1.20556 0.93098 0.86699 0.93284 0.97088 1.21782 0.93440 0.99005 1.01427 1.21865 1.01986 0.95473 0.96633 1.22144 0.82527 1.03858 0.93229 1.48118 1.19131 1.10163 1.56149 1.18750 0.86477 0.83308 0.78257 1.90840 1.20882 1.82519 1.49153 1.19689 0.97416 0.91963 1.05597 1.21466 0.89779 1.01873 0.95998 1.21719 1.00780 0.91369 0.98378 1.21739 0.94333 0.99196 0.92953 1.21337 0.94218 0.96833 1.01864 1.18067 0.83337 0.95721 0.98140 1.48472 1.13661 1.11882 1.37374 1.24468 0.96593 0.94438 0.95985 1.24059 0.98387 0.93518 1.08343 1.74467 1.21226 1.11632 1.09313 1.82977 0.92819 1.11306 1.18450 1.22067 0.93999 0.85893 0.99370 0.93125 0.79298 0.89463 0.91550 0.94109 0.86243 0.87985 0.88070 0.83326 0.80543 0.79758 0.81051 0.72752 0.76225 0.94688 0.90589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -68.66 13.97 21.65 0.30 -68.36 16 2 C -0.07 -4.21 5.50 84.86 0.47 -3.75 16 3 Si 0.97 47.70 27.74 68.60 1.90 49.61 16 4 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 6 H -0.24 -10.37 6.52 99.48 0.65 -9.72 16 7 C -0.24 -15.49 10.41 84.03 0.88 -14.61 16 8 H 0.03 2.42 8.06 -2.91 -0.02 2.40 16 9 N -0.74 -38.01 4.93 -322.57 -1.59 -39.60 16 10 C 0.17 7.58 2.92 45.07 0.13 7.71 16 11 H 0.01 0.58 8.08 -2.39 -0.02 0.56 16 12 C -0.12 -3.55 5.36 30.62 0.16 -3.38 16 13 C -0.12 -2.73 6.08 30.67 0.19 -2.55 16 14 C 0.10 2.19 5.70 86.36 0.49 2.68 16 15 N -0.60 -20.33 2.97 -822.56 -2.44 -22.78 16 16 C 0.54 20.35 5.93 86.72 0.51 20.86 16 17 O -0.56 -27.86 13.75 -3.96 -0.05 -27.91 16 18 C -0.14 -3.58 4.52 -19.99 -0.09 -3.67 16 19 C -0.07 -1.05 7.90 22.52 0.18 -0.87 16 20 C -0.10 -0.61 10.02 22.24 0.22 -0.38 16 21 C -0.06 -0.26 10.03 22.30 0.22 -0.04 16 22 C -0.12 -1.21 9.47 22.35 0.21 -0.99 16 23 C 0.14 3.18 6.70 38.45 0.26 3.44 16 24 N -0.33 -9.70 3.84 -186.57 -0.72 -10.42 16 25 C 0.03 0.67 10.92 83.24 0.91 1.58 16 26 C -0.09 -2.28 11.86 83.70 0.99 -1.29 16 27 N -0.30 -12.30 12.33 -58.72 -0.72 -13.02 16 28 N -0.08 -3.41 9.39 37.02 0.35 -3.06 16 29 C 0.11 4.77 6.03 86.36 0.52 5.29 16 30 H 0.26 16.96 8.31 -92.71 -0.77 16.19 16 31 H 0.37 17.33 5.66 -92.71 -0.52 16.80 16 32 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.10 1.70 5.48 -2.39 -0.01 1.69 16 37 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.15 1.78 7.91 -2.91 -0.02 1.76 16 39 H 0.18 -0.28 8.06 -2.91 -0.02 -0.30 16 40 H 0.19 -0.80 8.06 -2.91 -0.02 -0.83 16 41 H 0.17 0.40 6.86 -2.91 -0.02 0.38 16 42 H 0.26 1.11 7.19 -2.91 -0.02 1.09 16 43 H 0.22 3.66 8.06 -2.91 -0.02 3.64 16 44 H 0.03 1.90 7.00 -2.39 -0.02 1.88 16 45 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -108.33 366.57 3.72 -104.61 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.44 Total: 20.90 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.26 Total: 10.03 kcal Atomic # 7 Polarization: -152.41 SS G_CDS: -4.83 Total: -157.23 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.91 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 1.90 Total: 49.61 kcal Total: -108.33 3.72 -104.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001081721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.472 kcal (2) G-P(sol) polarization free energy of solvation -108.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds