Wall clock time and date at job start Sat Apr 11 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00084 * 2 1 4 4 H 1.48499 * 109.46772 * 269.99680 * 3 2 1 5 5 H 1.48494 * 109.46896 * 30.00102 * 3 2 1 6 6 H 1.48503 * 109.46911 * 150.00106 * 3 2 1 7 7 C 1.38817 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 197.35468 * 7 2 1 9 9 N 1.36939 * 120.00075 * 17.35880 * 7 2 1 10 10 C 1.46925 * 120.62902 * 27.67492 * 9 7 2 11 11 C 1.53193 * 108.77636 * 126.41503 * 10 9 7 12 12 C 1.53032 * 109.31452 * 54.63169 * 11 10 9 13 13 C 1.53041 * 109.54057 * 298.63783 * 12 11 10 14 14 H 1.09009 * 109.49578 * 301.37953 * 13 12 11 15 15 N 1.46501 * 109.50411 * 181.31588 * 13 12 11 16 16 C 1.34774 * 120.00364 * 154.99746 * 15 13 12 17 17 O 1.21571 * 119.99875 * 0.02562 * 16 15 13 18 18 C 1.47667 * 120.00021 * 180.02562 * 16 15 13 19 19 C 1.39698 * 120.08047 * 180.02562 * 18 16 15 20 20 C 1.37728 * 119.92539 * 180.02562 * 19 18 16 21 21 C 1.39052 * 120.07532 * 0.02562 * 20 19 18 22 22 N 1.39863 * 119.91772 * 179.97438 * 21 20 19 23 23 C 1.34807 * 126.84623 * 179.97438 * 22 21 20 24 24 N 1.30818 * 108.02206 * 179.97438 * 23 22 21 25 25 C 1.33291 * 109.84805 * 359.97438 * 24 23 22 26 26 N 1.30719 * 109.01388 * 0.02562 * 25 24 23 27 27 C 1.39044 * 120.15639 * 0.25442 * 21 20 19 28 28 C 1.37731 * 120.07752 * 359.44951 * 27 21 20 29 29 C 1.46918 * 120.63067 * 207.69314 * 9 7 2 30 30 H 0.97003 * 119.99689 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58888 * 6.62142 * 10 9 7 32 32 H 1.08998 * 109.58511 * 246.20386 * 10 9 7 33 33 H 1.09003 * 109.49658 * 294.67926 * 11 10 9 34 34 H 1.08996 * 109.49717 * 174.58635 * 11 10 9 35 35 H 1.08997 * 109.46508 * 178.61745 * 12 11 10 36 36 H 1.09006 * 109.45174 * 58.64500 * 12 11 10 37 37 H 0.96999 * 119.99335 * 335.00196 * 15 13 12 38 38 H 1.08006 * 120.04054 * 0.04027 * 19 18 16 39 39 H 1.08003 * 119.96209 * 179.97438 * 20 19 18 40 40 H 1.08008 * 125.98780 * 359.97438 * 23 22 21 41 41 H 1.07997 * 125.48866 * 179.74227 * 25 24 23 42 42 H 1.07998 * 119.95789 * 179.72779 * 27 21 20 43 43 H 1.07995 * 120.03468 * 180.25338 * 28 27 21 44 44 H 1.08999 * 109.58403 * 113.79912 * 29 9 7 45 45 H 1.09005 * 109.58949 * 353.37641 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0533 -1.2234 0.2795 9 7 1.3723 -2.3613 -0.3528 10 6 0.2278 -2.3350 -1.2737 11 6 0.5005 -3.3057 -2.4270 12 6 0.8183 -4.6906 -1.8587 13 6 2.0740 -4.6105 -0.9875 14 1 2.9080 -4.2414 -1.5845 15 7 2.3955 -5.9426 -0.4692 16 6 3.6624 -6.2425 -0.1210 17 8 4.5385 -5.4076 -0.2365 18 6 3.9865 -7.5854 0.4008 19 6 5.2991 -7.8979 0.7627 20 6 5.5978 -9.1516 1.2486 21 6 4.5948 -10.1058 1.3785 22 7 4.9020 -11.3780 1.8718 23 6 4.0453 -12.4027 2.0547 24 7 4.7220 -13.4160 2.5308 25 6 6.0051 -13.0805 2.6646 26 7 6.1647 -11.8431 2.2744 27 6 3.2884 -9.8001 1.0138 28 6 2.9813 -8.5465 0.5329 29 6 1.8191 -3.6546 0.1821 30 1 -0.4850 0.8401 -0.0004 31 1 0.0985 -1.3268 -1.6673 32 1 -0.6744 -2.6411 -0.7441 33 1 1.3492 -2.9483 -3.0103 34 1 -0.3803 -3.3680 -3.0660 35 1 0.9887 -5.3890 -2.6779 36 1 -0.0209 -5.0365 -1.2550 37 1 1.6964 -6.6086 -0.3768 38 1 6.0787 -7.1573 0.6619 39 1 6.6125 -9.3940 1.5282 40 1 2.9859 -12.3894 1.8449 41 1 6.7860 -13.7254 3.0396 42 1 2.5127 -10.5451 1.1119 43 1 1.9656 -8.3086 0.2537 44 1 1.0467 -4.0683 0.8305 45 1 2.7399 -3.5172 0.7491 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007532237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:05 Heat of formation + Delta-G solvation = 112.818313 kcal Electronic energy + Delta-G solvation = -28276.037939 eV Core-core repulsion = 24296.310515 eV Total energy + Delta-G solvation = -3979.727424 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.81415 -40.41648 -38.90558 -37.32132 -34.64588 -34.41511 -32.56699 -32.13539 -31.31996 -30.51339 -30.26694 -28.46780 -25.31508 -25.11905 -23.88393 -22.80783 -22.14246 -21.84505 -21.48513 -20.32228 -19.53352 -18.96300 -17.69231 -16.83021 -16.34422 -16.31767 -15.95528 -15.26039 -14.95870 -14.82112 -14.73176 -14.69312 -14.20220 -14.02762 -13.87039 -13.56386 -13.30429 -13.11052 -12.95530 -12.73748 -12.43553 -12.40496 -11.86215 -11.54380 -11.28448 -11.11271 -10.91612 -10.82186 -10.63870 -10.40529 -10.29478 -10.24151 -10.07851 -9.93000 -9.67937 -9.62540 -9.59567 -8.97659 -8.79597 -8.42130 -6.69862 -5.79741 -3.21967 -0.01801 0.80728 1.33536 1.65328 2.38880 2.73238 3.18118 3.39688 3.46296 3.48840 3.55449 3.72067 3.86289 4.20296 4.33980 4.43379 4.49764 4.59095 4.77835 4.95874 5.01994 5.23366 5.34803 5.42776 5.49088 5.52258 5.57563 5.60654 5.66360 5.80267 5.84626 5.93917 6.03158 6.09740 6.13073 6.19231 6.45950 6.48270 6.57161 6.60170 6.65061 6.79742 6.93833 7.33141 7.46391 7.61477 7.62416 7.82310 8.28855 8.44716 9.20755 9.82882 10.38128 11.28932 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024683 B = 0.001989 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.096237 B =14075.342239 C =14679.280690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.088 0.912 15 N -0.715 5.715 16 C 0.552 3.448 17 O -0.527 6.527 18 C -0.126 4.126 19 C -0.037 4.037 20 C -0.118 4.118 21 C 0.164 3.836 22 N -0.330 5.330 23 C 0.263 3.737 24 N -0.537 5.537 25 C 0.207 3.793 26 N -0.312 5.312 27 C -0.140 4.140 28 C -0.061 4.061 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.225 0.775 41 H 0.224 0.776 42 H 0.138 0.862 43 H 0.141 0.859 44 H 0.018 0.982 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -25.204 0.475 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.380 4.380 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.106 0.894 15 N -0.366 5.366 16 C 0.338 3.662 17 O -0.404 6.404 18 C -0.130 4.130 19 C -0.057 4.057 20 C -0.138 4.138 21 C 0.071 3.929 22 N -0.115 5.115 23 C -0.032 4.032 24 N -0.263 5.263 25 C -0.095 4.095 26 N -0.137 5.137 27 C -0.161 4.161 28 C -0.080 4.080 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.167 0.833 39 H 0.162 0.838 40 H 0.241 0.759 41 H 0.240 0.760 42 H 0.156 0.844 43 H 0.159 0.841 44 H 0.035 0.965 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.358 -24.376 0.507 24.963 hybrid contribution -0.225 0.455 0.056 0.510 sum 5.134 -23.921 0.563 24.472 Atomic orbital electron populations 1.70039 1.05230 1.25509 1.54053 1.25029 0.95318 0.98424 1.00887 0.86261 0.79181 0.83474 0.77741 1.21391 1.21787 1.20351 1.19238 0.92844 0.84649 1.41272 0.91495 1.44002 1.35605 1.01036 1.50360 1.20854 0.88565 0.98618 0.87869 1.22181 1.00499 0.95118 1.00159 1.21683 0.96654 0.98716 0.98250 1.21818 0.97982 0.80919 0.97279 0.89373 1.46076 1.08828 1.16082 1.65599 1.18083 0.83111 0.86712 0.78299 1.90832 1.46915 1.49253 1.53433 1.20250 0.94645 0.94810 1.03320 1.21264 0.96106 0.95530 0.92780 1.20921 0.99535 0.92212 1.01137 1.17740 0.94631 0.81980 0.98528 1.47734 1.06691 1.10435 1.46592 1.26284 0.99125 0.82686 0.95085 1.70652 1.04802 1.28617 1.22217 1.26229 0.94325 0.91598 0.97372 1.78170 0.99964 1.13953 1.21587 1.20691 0.93785 0.98377 1.03213 1.21155 0.99314 0.91551 0.95987 1.21183 0.98002 0.86849 0.92542 0.93653 0.89211 0.96280 0.92372 0.92656 0.93034 0.92208 0.77217 0.83296 0.83771 0.75916 0.75966 0.84405 0.84147 0.96452 0.92324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 2 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 8 H 0.07 1.88 7.89 -52.49 -0.41 1.47 16 9 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 10 C 0.17 3.84 5.31 -3.71 -0.02 3.82 16 11 C -0.14 -2.51 6.08 -26.62 -0.16 -2.67 16 12 C -0.11 -1.74 5.35 -26.69 -0.14 -1.88 16 13 C 0.13 2.13 2.60 -67.81 -0.18 1.95 16 14 H 0.09 1.74 7.58 -51.92 -0.39 1.35 16 15 N -0.72 -9.42 5.03 -54.69 -0.28 -9.70 16 16 C 0.55 7.94 7.73 -12.41 -0.10 7.85 16 17 O -0.53 -9.93 16.00 5.30 0.08 -9.84 16 18 C -0.13 -1.36 5.87 -104.95 -0.62 -1.97 16 19 C -0.04 -0.39 9.58 -39.22 -0.38 -0.77 16 20 C -0.12 -1.11 9.66 -39.47 -0.38 -1.49 16 21 C 0.16 1.41 6.70 -83.59 -0.56 0.85 16 22 N -0.33 -2.91 3.81 -11.77 -0.04 -2.96 16 23 C 0.26 1.84 11.97 -90.32 -1.08 0.76 16 24 N -0.54 -4.68 11.19 -15.73 -0.18 -4.86 16 25 C 0.21 1.67 13.03 -91.76 -1.20 0.47 16 26 N -0.31 -3.07 12.03 29.30 0.35 -2.72 16 27 C -0.14 -0.90 9.45 -39.47 -0.37 -1.27 16 28 C -0.06 -0.45 9.53 -39.22 -0.37 -0.82 16 29 C 0.14 3.01 6.09 -3.72 -0.02 2.98 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.09 2.34 6.04 -51.93 -0.31 2.03 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.39 3.73 6.63 -40.82 -0.27 3.46 16 38 H 0.15 1.60 7.64 -52.48 -0.40 1.20 16 39 H 0.14 1.32 7.72 -52.48 -0.41 0.91 16 40 H 0.22 0.54 7.08 -52.48 -0.37 0.16 16 41 H 0.22 0.93 8.06 -52.49 -0.42 0.50 16 42 H 0.14 0.41 6.78 -52.49 -0.36 0.05 16 43 H 0.14 0.69 6.39 -52.49 -0.34 0.35 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -35.17 373.53 -10.93 -46.10 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.77 Total: 1.35 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -5.81 Total: 0.66 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -0.04 Total: -60.82 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.08 Total: -9.84 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.17 -10.93 -46.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007532237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.917 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds