Wall clock time and date at job start Sat Apr 11 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 120.00008 * 2 1 4 4 H 1.48502 * 109.46940 * 272.96342 * 3 2 1 5 5 H 1.48497 * 109.47139 * 32.96222 * 3 2 1 6 6 H 1.48499 * 109.47200 * 152.96113 * 3 2 1 7 7 C 1.38814 * 120.00208 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99580 * 339.33738 * 7 2 1 9 9 N 1.36939 * 120.00086 * 159.34648 * 7 2 1 10 10 C 1.46925 * 120.62956 * 332.61713 * 9 7 2 11 11 C 1.53192 * 108.77573 * 233.63611 * 10 9 7 12 12 C 1.53046 * 109.33691 * 305.34892 * 11 10 9 13 13 C 1.53103 * 109.50171 * 61.34884 * 12 11 10 14 14 H 1.08997 * 109.49353 * 58.61606 * 13 12 11 15 15 N 1.46507 * 109.51266 * 178.68490 * 13 12 11 16 16 C 1.34776 * 119.99522 * 204.87333 * 15 13 12 17 17 O 1.21544 * 120.00506 * 359.97438 * 16 15 13 18 18 C 1.47945 * 119.99701 * 180.02562 * 16 15 13 19 19 C 1.39498 * 119.59519 * 179.72626 * 18 16 15 20 20 C 1.38231 * 119.18878 * 179.70525 * 19 18 16 21 21 C 1.39788 * 118.38586 * 0.55633 * 20 19 18 22 22 C 1.48263 * 120.43992 * 179.75210 * 21 20 19 23 23 C 1.40954 * 126.24435 * 359.97438 * 22 21 20 24 24 N 1.30631 * 108.06909 * 179.97438 * 23 22 21 25 25 N 1.40004 * 108.56556 * 359.97438 * 24 23 22 26 26 H 0.97000 * 125.86713 * 179.97438 * 25 24 23 27 27 C 1.34713 * 108.25906 * 359.75945 * 25 24 23 28 28 C 1.39750 * 119.12269 * 359.72666 * 21 20 19 29 29 N 1.31304 * 120.72660 * 359.97438 * 28 21 20 30 30 C 1.46928 * 120.62784 * 152.64743 * 9 7 2 31 31 H 0.97002 * 120.00185 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58593 * 113.84690 * 10 9 7 33 33 H 1.08995 * 109.70375 * 353.49115 * 10 9 7 34 34 H 1.08997 * 109.49937 * 65.31549 * 11 10 9 35 35 H 1.08999 * 109.49926 * 185.38561 * 11 10 9 36 36 H 1.08998 * 109.45947 * 181.40562 * 12 11 10 37 37 H 1.09001 * 109.46068 * 301.36547 * 12 11 10 38 38 H 0.96994 * 119.99964 * 24.87043 * 15 13 12 39 39 H 1.08003 * 120.40782 * 359.97438 * 19 18 16 40 40 H 1.07994 * 120.80750 * 180.28045 * 20 19 18 41 41 H 1.07995 * 125.96991 * 0.02562 * 23 22 21 42 42 H 1.08001 * 126.19888 * 180.28021 * 27 25 24 43 43 H 1.07996 * 119.63333 * 180.02562 * 28 21 20 44 44 H 1.09005 * 109.58113 * 246.15314 * 30 9 7 45 45 H 1.08994 * 109.58724 * 6.57305 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4350 2.0826 -1.3982 5 1 1.4804 2.6338 0.7617 6 1 3.5776 1.4230 0.6365 7 6 2.0103 -1.2021 -0.0005 8 1 1.5223 -2.1075 0.3291 9 7 3.3136 -1.2400 -0.4188 10 6 3.8172 -0.2584 -1.3891 11 6 4.4611 -1.0079 -2.5598 12 6 5.5282 -1.9649 -2.0234 13 6 4.8741 -2.9905 -1.0936 14 1 4.1070 -3.5394 -1.6398 15 7 5.8901 -3.9259 -0.6047 16 6 5.5316 -5.1626 -0.2068 17 8 4.3654 -5.5019 -0.2532 18 6 6.5576 -6.1071 0.2875 19 6 6.1764 -7.3831 0.7025 20 6 7.1427 -8.2609 1.1570 21 6 8.4709 -7.8264 1.1935 22 6 9.5432 -8.7284 1.6780 23 6 9.3763 -10.0514 2.1347 24 7 10.5499 -10.5141 2.4737 25 7 11.5048 -9.5153 2.2488 26 1 12.4574 -9.5918 2.4154 27 6 10.8741 -8.4314 1.7568 28 6 8.7746 -6.5308 0.7667 29 7 7.8296 -5.7276 0.3356 30 6 4.2348 -2.2635 0.0937 31 1 -0.4850 0.8400 0.0004 32 1 4.5602 0.3799 -0.9110 33 1 2.9923 0.3524 -1.7558 34 1 3.6980 -1.5755 -3.0923 35 1 4.9231 -0.2923 -3.2399 36 1 6.0050 -2.4811 -2.8566 37 1 6.2779 -1.3995 -1.4699 38 1 6.8208 -3.6550 -0.5673 39 1 5.1396 -7.6832 0.6651 40 1 6.8774 -9.2565 1.4804 41 1 8.4415 -10.5890 2.1934 42 1 11.3366 -7.4963 1.4775 43 1 9.7980 -6.1868 0.7909 44 1 5.0118 -1.7886 0.6928 45 1 3.6838 -2.9775 0.7057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007689913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:19 Heat of formation + Delta-G solvation = 101.162991 kcal Electronic energy + Delta-G solvation = -28246.248363 eV Core-core repulsion = 24266.015526 eV Total energy + Delta-G solvation = -3980.232837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83015 -40.55489 -39.10945 -37.49071 -34.47601 -33.78040 -32.42718 -32.26721 -31.91081 -30.79165 -29.81326 -28.66152 -25.27232 -24.88333 -24.29161 -22.63661 -22.07710 -21.92752 -21.01319 -20.35492 -19.70464 -18.74969 -17.92289 -16.84712 -16.55589 -15.64030 -15.51912 -15.37720 -15.31533 -15.18370 -15.00031 -14.71388 -14.12143 -13.90138 -13.84676 -13.67602 -13.40592 -13.22996 -13.13631 -12.78127 -12.40957 -12.28348 -12.02912 -11.48587 -11.43403 -11.12114 -10.88569 -10.73939 -10.69924 -10.29272 -10.22978 -10.10534 -9.93053 -9.86385 -9.69873 -9.60231 -9.41067 -8.94547 -8.50468 -8.38369 -6.91881 -5.88078 -3.24288 0.22351 0.99365 1.35769 2.17889 2.26195 2.96076 3.24066 3.35483 3.52047 3.55314 3.81791 3.92715 4.07816 4.21796 4.47348 4.51372 4.58218 4.69763 4.80152 4.90639 5.04307 5.08436 5.21929 5.33271 5.35116 5.46871 5.48528 5.57731 5.75561 5.84588 5.86934 5.95544 6.00698 6.09288 6.25223 6.31156 6.35633 6.48055 6.59314 6.59601 6.67519 6.69282 6.83049 6.99072 7.00842 7.45321 7.80766 8.02511 8.37922 8.42467 9.00792 9.78181 10.14235 11.27875 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002009 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.161552 B =13934.173345 C =14269.918645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.883 3.117 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.087 0.913 9 N -0.601 5.601 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.116 4.116 13 C 0.123 3.877 14 H 0.092 0.908 15 N -0.702 5.702 16 C 0.566 3.434 17 O -0.527 6.527 18 C 0.073 3.927 19 C -0.100 4.100 20 C -0.085 4.085 21 C -0.027 4.027 22 C -0.203 4.203 23 C 0.072 3.928 24 N -0.292 5.292 25 N -0.470 5.470 26 H 0.443 0.557 27 C 0.084 3.916 28 C 0.094 3.906 29 N -0.450 5.450 30 C 0.144 3.856 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.405 0.595 39 H 0.151 0.849 40 H 0.141 0.859 41 H 0.189 0.811 42 H 0.185 0.815 43 H 0.158 0.842 44 H 0.023 0.977 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.128 -17.447 1.056 31.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.105 0.895 9 N -0.325 5.325 10 C -0.004 4.004 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.018 3.982 14 H 0.110 0.890 15 N -0.353 5.353 16 C 0.350 3.650 17 O -0.402 6.402 18 C -0.065 4.065 19 C -0.120 4.120 20 C -0.110 4.110 21 C -0.030 4.030 22 C -0.216 4.216 23 C -0.116 4.116 24 N -0.113 5.113 25 N -0.176 5.176 26 H 0.288 0.712 27 C -0.066 4.066 28 C -0.067 4.067 29 N -0.161 5.161 30 C 0.017 3.983 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.240 0.760 39 H 0.169 0.831 40 H 0.159 0.841 41 H 0.206 0.794 42 H 0.202 0.798 43 H 0.175 0.825 44 H 0.041 0.959 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 25.910 -17.733 1.220 31.421 hybrid contribution 0.819 0.969 0.100 1.272 sum 26.729 -16.764 1.320 31.579 Atomic orbital electron populations 1.69844 1.05687 1.26432 1.53142 1.25270 0.95233 0.97496 0.99648 0.86946 0.80016 0.84733 0.76931 1.21637 1.23223 1.19645 1.18960 0.84781 0.94887 1.39874 0.89540 1.44292 1.08720 1.32695 1.46800 1.21395 0.97405 0.92097 0.89475 1.21999 0.97844 0.98335 0.98959 1.21685 0.98369 0.96974 0.98350 1.21773 0.89992 0.89454 0.96980 0.89034 1.45934 1.12115 1.12856 1.64363 1.17812 0.87138 0.81892 0.78208 1.90846 1.17981 1.77062 1.54336 1.21259 0.90960 0.93924 1.00334 1.22082 1.01755 0.92741 0.95443 1.21508 0.91386 1.00189 0.97960 1.19217 0.92513 0.93953 0.97367 1.18778 0.92229 0.95856 1.14700 1.24071 0.96909 0.93652 0.96926 1.77287 0.97892 1.12338 1.23768 1.46260 1.10492 1.10007 1.50879 0.71213 1.22717 0.93041 0.93339 0.97472 1.22683 0.98526 0.89283 0.96191 1.67472 1.00369 1.35924 1.12317 1.21220 0.92698 0.91330 0.93034 0.92827 0.95661 0.90772 0.91368 0.92234 0.92355 0.92013 0.75965 0.83094 0.84106 0.79421 0.79845 0.82511 0.95889 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.97 55.49 0.78 -27.68 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.56 16 3 Si 0.88 22.71 24.35 -169.99 -4.14 18.57 16 4 H -0.29 -7.10 6.62 56.52 0.37 -6.72 16 5 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 6 H -0.27 -6.85 6.63 56.52 0.37 -6.48 16 7 C -0.26 -7.44 10.04 -15.06 -0.15 -7.60 16 8 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 9 N -0.60 -14.77 2.77 -172.32 -0.48 -15.25 16 10 C 0.12 2.67 4.20 -3.71 -0.02 2.65 16 11 C -0.13 -2.29 6.08 -26.61 -0.16 -2.46 16 12 C -0.12 -1.76 5.36 -26.65 -0.14 -1.91 16 13 C 0.12 2.17 2.60 -67.78 -0.18 1.99 16 14 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 15 N -0.70 -10.51 5.07 -54.57 -0.28 -10.79 16 16 C 0.57 9.05 7.77 -12.28 -0.10 8.95 16 17 O -0.53 -10.32 15.97 5.33 0.09 -10.23 16 18 C 0.07 0.94 6.75 -82.99 -0.56 0.38 16 19 C -0.10 -1.08 9.61 -39.11 -0.38 -1.46 16 20 C -0.08 -0.69 9.69 -39.00 -0.38 -1.06 16 21 C -0.03 -0.21 5.90 -104.63 -0.62 -0.83 16 22 C -0.20 -1.31 6.05 -105.34 -0.64 -1.95 16 23 C 0.07 0.48 11.45 -17.03 -0.20 0.28 16 24 N -0.29 -2.20 12.66 30.82 0.39 -1.81 16 25 N -0.47 -2.17 7.32 30.64 0.22 -1.94 16 26 H 0.44 0.63 8.96 -182.67 -1.64 -1.01 16 27 C 0.08 0.36 11.40 -16.88 -0.19 0.16 16 28 C 0.09 0.77 10.73 -17.21 -0.18 0.59 16 29 N -0.45 -5.01 9.51 -9.54 -0.09 -5.10 16 30 C 0.14 3.05 6.09 -3.71 -0.02 3.03 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.03 0.54 7.08 -51.93 -0.37 0.18 16 33 H 0.07 1.78 4.49 -51.93 -0.23 1.55 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.41 5.14 7.92 -40.82 -0.32 4.81 16 39 H 0.15 1.63 7.63 -52.48 -0.40 1.23 16 40 H 0.14 0.74 7.16 -52.49 -0.38 0.36 16 41 H 0.19 0.78 7.41 -52.49 -0.39 0.39 16 42 H 0.18 0.13 7.30 -52.49 -0.38 -0.26 16 43 H 0.16 0.75 7.03 -52.49 -0.37 0.38 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 1.56 7.93 -51.93 -0.41 1.15 16 LS Contribution 368.51 15.07 5.55 5.55 Total: -1.00 -37.01 368.51 -8.96 -45.97 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.01 Total: 1.34 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -4.00 Total: 1.36 kcal Atomic # 7 Polarization: -63.11 SS G_CDS: 0.55 Total: -62.57 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.14 Total: 18.57 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.01 -8.96 -45.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007689913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.135 kcal (2) G-P(sol) polarization free energy of solvation -37.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds