Wall clock time and date at job start Sat Apr 11 2020 06:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48508 * 109.46627 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47014 * 299.99411 * 3 2 1 6 6 H 1.48498 * 109.47081 * 59.99951 * 3 2 1 7 7 C 1.38814 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99940 * 196.99524 * 7 2 1 9 9 N 1.36942 * 119.99631 * 17.00207 * 7 2 1 10 10 C 1.46921 * 120.62812 * 207.99298 * 9 7 2 11 11 C 1.53195 * 108.77349 * 233.58874 * 10 9 7 12 12 C 1.53034 * 109.33843 * 305.37606 * 11 10 9 13 13 C 1.53040 * 109.53920 * 61.31900 * 12 11 10 14 14 H 1.09000 * 109.49460 * 58.64822 * 13 12 11 15 15 N 1.46492 * 109.50184 * 178.71584 * 13 12 11 16 16 C 1.34772 * 120.00321 * 205.21058 * 15 13 12 17 17 O 1.21633 * 119.99828 * 354.78388 * 16 15 13 18 18 C 1.47155 * 120.00303 * 174.77463 * 16 15 13 19 19 C 1.37069 * 127.21235 * 354.43074 * 18 16 15 20 20 N 1.33308 * 106.37601 * 179.97438 * 19 18 16 21 21 N 1.28501 * 109.49675 * 0.02562 * 20 19 18 22 22 N 1.28716 * 110.66769 * 359.74606 * 21 20 19 23 23 C 1.40088 * 126.05513 * 180.27917 * 22 21 20 24 24 C 1.38865 * 120.06998 * 135.89889 * 23 22 21 25 25 C 1.38108 * 119.93161 * 179.74222 * 24 23 22 26 26 C 1.38287 * 120.06892 * 0.53771 * 25 24 23 27 27 C 1.38292 * 120.13817 * 359.73850 * 26 25 24 28 28 C 1.38107 * 120.06848 * 359.97438 * 27 26 25 29 29 C 1.46916 * 120.63147 * 27.97011 * 9 7 2 30 30 H 0.96997 * 120.00186 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58619 * 353.37110 * 10 9 7 32 32 H 1.08996 * 109.58713 * 113.79729 * 10 9 7 33 33 H 1.08993 * 109.49891 * 65.31812 * 11 10 9 34 34 H 1.09005 * 109.49564 * 185.37968 * 11 10 9 35 35 H 1.09006 * 109.43448 * 301.31591 * 12 11 10 36 36 H 1.09000 * 109.49036 * 181.35779 * 12 11 10 37 37 H 0.97009 * 120.00171 * 24.93369 * 15 13 12 38 38 H 1.08002 * 126.81074 * 0.02562 * 19 18 16 39 39 H 1.07999 * 120.03498 * 0.02562 * 24 23 22 40 40 H 1.07996 * 119.96923 * 180.27260 * 25 24 23 41 41 H 1.07996 * 119.93172 * 179.76439 * 26 25 24 42 42 H 1.08000 * 119.96260 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.03514 * 180.02562 * 28 27 26 44 44 H 1.08998 * 109.59080 * 6.62374 * 29 9 7 45 45 H 1.09005 * 109.70272 * 246.26854 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2224 0.2739 9 7 1.3704 -2.3623 -0.3457 10 6 1.8160 -3.6533 0.1959 11 6 2.0686 -4.6159 -0.9687 12 6 0.8123 -4.6994 -1.8387 13 6 0.4952 -3.3170 -2.4138 14 1 1.3434 -2.9637 -3.0002 15 7 -0.6896 -3.4040 -3.2710 16 6 -0.8738 -2.5063 -4.2592 17 8 -0.1079 -1.5691 -4.3800 18 6 -2.0013 -2.6600 -5.1922 19 6 -2.8847 -3.7059 -5.2597 20 7 -3.7319 -3.4191 -6.2482 21 7 -3.4167 -2.2871 -6.7683 22 7 -2.3920 -1.7837 -6.1739 23 6 -1.7821 -0.5595 -6.4768 24 6 -1.4078 0.3031 -5.4549 25 6 -0.8019 1.5070 -5.7565 26 6 -0.5779 1.8588 -7.0750 27 6 -0.9547 1.0045 -8.0952 28 6 -1.5556 -0.2034 -7.7999 29 6 0.2250 -2.3396 -1.2655 30 1 -0.4850 0.8400 -0.0004 31 1 2.7376 -3.5139 0.7611 32 1 1.0438 -4.0624 0.8473 33 1 2.9023 -4.2507 -1.5684 34 1 2.3074 -5.6050 -0.5779 35 1 -0.0265 -5.0416 -1.2326 36 1 0.9810 -5.4021 -2.6546 37 1 -1.3396 -4.1101 -3.1299 38 1 -2.8932 -4.5872 -4.6354 39 1 -1.5861 0.0307 -4.4252 40 1 -0.5065 2.1762 -4.9621 41 1 -0.1074 2.8024 -7.3085 42 1 -0.7788 1.2823 -9.1240 43 1 -1.8493 -0.8702 -8.5970 44 1 0.0967 -1.3335 -1.6646 45 1 -0.6784 -2.6402 -0.7349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008711480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:46 Heat of formation + Delta-G solvation = 124.121968 kcal Electronic energy + Delta-G solvation = -30084.962529 eV Core-core repulsion = 26105.725268 eV Total energy + Delta-G solvation = -3979.237261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.57019 -39.58143 -39.25901 -37.37740 -34.88038 -34.19876 -32.84285 -31.75776 -31.05201 -30.10401 -30.01858 -28.81117 -25.34829 -24.82741 -23.83533 -23.09144 -22.25848 -22.06975 -21.21187 -20.24538 -19.56411 -18.59556 -17.09123 -16.87711 -16.73162 -16.49603 -15.72316 -15.15673 -15.03216 -14.78567 -14.37229 -14.27806 -14.06295 -13.87715 -13.58921 -13.52261 -13.13132 -13.01743 -12.51395 -12.41585 -12.22314 -12.00524 -11.89061 -11.45882 -11.37847 -11.09731 -10.89381 -10.79934 -10.74907 -10.57345 -10.30501 -10.15849 -10.01807 -9.79373 -9.64615 -9.57044 -9.07527 -8.81836 -8.74141 -8.50675 -6.72872 -5.82672 -3.26018 0.44506 1.22530 1.35157 1.95578 2.20686 3.18503 3.22208 3.36301 3.43681 3.45746 3.54611 4.24930 4.46391 4.51825 4.64455 4.73144 4.81674 4.95491 5.10003 5.19807 5.24797 5.31552 5.37699 5.45775 5.51334 5.54767 5.60329 5.76388 5.84911 5.97386 6.05596 6.12394 6.16093 6.23394 6.34356 6.35007 6.36250 6.43493 6.59116 6.65823 6.75444 6.80486 6.89193 7.17527 7.61504 7.63651 7.77791 8.17168 8.28691 8.41308 9.15979 9.79769 10.34408 11.25331 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.004386 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.293585 B = 6382.343027 C = 8522.239964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.008 3.992 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.290 1.290 7 C -0.256 4.256 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.141 3.859 11 C -0.131 4.131 12 C -0.117 4.117 13 C 0.119 3.881 14 H 0.085 0.915 15 N -0.699 5.699 16 C 0.583 3.417 17 O -0.513 6.513 18 C -0.055 4.055 19 C -0.001 4.001 20 N -0.270 5.270 21 N -0.059 5.059 22 N -0.206 5.206 23 C 0.099 3.901 24 C -0.049 4.049 25 C -0.106 4.106 26 C -0.098 4.098 27 C -0.120 4.120 28 C -0.091 4.091 29 C 0.166 3.834 30 H 0.253 0.747 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.201 0.799 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.096 0.904 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 -4.728 -12.266 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.191 4.191 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.085 0.915 9 N -0.310 5.310 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.155 4.155 13 C 0.015 3.985 14 H 0.103 0.897 15 N -0.350 5.350 16 C 0.365 3.635 17 O -0.388 6.388 18 C -0.188 4.188 19 C -0.161 4.161 20 N -0.133 5.133 21 N -0.037 5.037 22 N 0.003 4.997 23 C 0.009 3.991 24 C -0.069 4.069 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.138 4.138 28 C -0.111 4.111 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.230 0.770 38 H 0.218 0.782 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.149 0.851 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.115 0.885 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -3.542 -3.739 -13.428 14.382 hybrid contribution 0.792 0.250 0.923 1.242 sum -2.750 -3.489 -12.505 13.270 Atomic orbital electron populations 1.70024 1.05306 1.25416 1.53555 1.25023 0.95244 0.98432 1.00438 0.86258 0.79495 0.83991 0.77253 1.20176 1.21443 1.21729 1.19197 0.92662 0.84702 1.41936 0.91520 1.43962 1.35892 1.01807 1.49384 1.20976 0.97835 0.86819 0.92879 1.21999 0.96843 0.99475 0.98723 1.21692 0.99162 0.95732 0.98916 1.22119 0.86108 0.97431 0.92890 0.89714 1.45799 1.26493 1.30883 1.31824 1.16640 0.83045 0.83443 0.80325 1.90921 1.45492 1.29876 1.72480 1.22317 1.03406 0.94019 0.99100 1.23878 0.92840 1.00019 0.99358 1.74872 1.22725 1.06524 1.09149 1.78359 1.00724 1.05808 1.18856 1.44709 1.19241 1.14288 1.21453 1.17518 1.02798 0.83725 0.95038 1.21157 0.94797 0.92035 0.98945 1.21113 0.98137 0.96111 0.97093 1.21384 0.97896 0.99624 0.92690 1.20977 0.99470 0.93503 0.99872 1.20943 0.98473 0.97852 0.93785 1.21095 0.88890 0.98834 0.87262 0.93720 0.92545 0.96289 0.92082 0.92456 0.91998 0.92874 0.77023 0.78206 0.84395 0.84488 0.85127 0.84866 0.85017 0.88545 0.96329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.70 11.19 55.49 0.62 -25.08 16 2 C 0.01 0.21 4.92 -17.43 -0.09 0.12 16 3 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.26 -6.89 9.58 -15.06 -0.14 -7.04 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.20 2.99 -172.33 -0.52 -14.72 16 10 C 0.14 2.77 6.52 -3.71 -0.02 2.75 16 11 C -0.13 -2.05 6.08 -26.61 -0.16 -2.21 16 12 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 13 C 0.12 2.12 2.57 -67.81 -0.17 1.95 16 14 H 0.08 1.72 7.65 -51.93 -0.40 1.32 16 15 N -0.70 -10.37 5.06 -54.85 -0.28 -10.65 16 16 C 0.58 9.71 7.40 -12.64 -0.09 9.62 16 17 O -0.51 -10.32 12.86 5.25 0.07 -10.25 16 18 C -0.06 -0.83 6.79 -82.23 -0.56 -1.39 16 19 C 0.00 -0.02 11.54 -17.33 -0.20 -0.22 16 20 N -0.27 -4.01 12.34 30.48 0.38 -3.63 16 21 N -0.06 -0.92 12.94 60.35 0.78 -0.14 16 22 N -0.21 -3.22 3.49 -7.21 -0.03 -3.25 16 23 C 0.10 1.49 5.90 -83.62 -0.49 0.99 16 24 C -0.05 -0.77 7.43 -39.40 -0.29 -1.06 16 25 C -0.11 -1.42 10.04 -39.61 -0.40 -1.82 16 26 C -0.10 -1.06 10.04 -39.54 -0.40 -1.46 16 27 C -0.12 -1.25 10.04 -39.61 -0.40 -1.64 16 28 C -0.09 -1.13 9.81 -39.40 -0.39 -1.52 16 29 C 0.17 3.79 4.88 -3.71 -0.02 3.78 16 30 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.06 1.09 7.93 -51.93 -0.41 0.68 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 4.42 7.68 -40.82 -0.31 4.11 16 38 H 0.20 1.63 7.60 -52.49 -0.40 1.23 16 39 H 0.14 2.44 6.68 -52.49 -0.35 2.09 16 40 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.10 2.59 6.05 -51.93 -0.31 2.28 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 371.55 15.07 5.60 5.60 Total: -1.00 -32.59 371.55 -8.34 -40.93 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.96 Total: 5.61 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.97 Total: -1.01 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.96 Total: -57.46 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.07 Total: -10.25 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.59 -8.34 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008711480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.051 kcal (2) G-P(sol) polarization free energy of solvation -32.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds