Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99699 * 2 1 4 4 H 1.48508 * 109.46627 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47014 * 299.99411 * 3 2 1 6 6 H 1.48498 * 109.47081 * 59.99951 * 3 2 1 7 7 C 1.38814 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99940 * 196.99524 * 7 2 1 9 9 N 1.36942 * 119.99631 * 17.00207 * 7 2 1 10 10 C 1.46921 * 120.62812 * 207.99298 * 9 7 2 11 11 C 1.53195 * 108.77349 * 233.58874 * 10 9 7 12 12 C 1.53034 * 109.33843 * 305.37606 * 11 10 9 13 13 C 1.53040 * 109.53920 * 61.31900 * 12 11 10 14 14 H 1.09000 * 109.49460 * 58.64822 * 13 12 11 15 15 N 1.46492 * 109.50184 * 178.71584 * 13 12 11 16 16 C 1.34772 * 120.00321 * 205.21058 * 15 13 12 17 17 O 1.21633 * 119.99828 * 354.78388 * 16 15 13 18 18 C 1.47155 * 120.00303 * 174.77463 * 16 15 13 19 19 C 1.37069 * 127.21235 * 354.43074 * 18 16 15 20 20 N 1.33308 * 106.37601 * 179.97438 * 19 18 16 21 21 N 1.28501 * 109.49675 * 0.02562 * 20 19 18 22 22 N 1.28716 * 110.66769 * 359.74606 * 21 20 19 23 23 C 1.40088 * 126.05513 * 180.27917 * 22 21 20 24 24 C 1.38865 * 120.06998 * 135.89889 * 23 22 21 25 25 C 1.38108 * 119.93161 * 179.74222 * 24 23 22 26 26 C 1.38287 * 120.06892 * 0.53771 * 25 24 23 27 27 C 1.38292 * 120.13817 * 359.73850 * 26 25 24 28 28 C 1.38107 * 120.06848 * 359.97438 * 27 26 25 29 29 C 1.46916 * 120.63147 * 27.97011 * 9 7 2 30 30 H 0.96997 * 120.00186 * 0.02562 * 1 2 3 31 31 H 1.09004 * 109.58619 * 353.37110 * 10 9 7 32 32 H 1.08996 * 109.58713 * 113.79729 * 10 9 7 33 33 H 1.08993 * 109.49891 * 65.31812 * 11 10 9 34 34 H 1.09005 * 109.49564 * 185.37968 * 11 10 9 35 35 H 1.09006 * 109.43448 * 301.31591 * 12 11 10 36 36 H 1.09000 * 109.49036 * 181.35779 * 12 11 10 37 37 H 0.97009 * 120.00171 * 24.93369 * 15 13 12 38 38 H 1.08002 * 126.81074 * 0.02562 * 19 18 16 39 39 H 1.07999 * 120.03498 * 0.02562 * 24 23 22 40 40 H 1.07996 * 119.96923 * 180.27260 * 25 24 23 41 41 H 1.07996 * 119.93172 * 179.76439 * 26 25 24 42 42 H 1.08000 * 119.96260 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.03514 * 180.02562 * 28 27 26 44 44 H 1.08998 * 109.59080 * 6.62374 * 29 9 7 45 45 H 1.09005 * 109.70272 * 246.26854 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0549 -1.2224 0.2739 9 7 1.3704 -2.3623 -0.3457 10 6 1.8160 -3.6533 0.1959 11 6 2.0686 -4.6159 -0.9687 12 6 0.8123 -4.6994 -1.8387 13 6 0.4952 -3.3170 -2.4138 14 1 1.3434 -2.9637 -3.0002 15 7 -0.6896 -3.4040 -3.2710 16 6 -0.8738 -2.5063 -4.2592 17 8 -0.1079 -1.5691 -4.3800 18 6 -2.0013 -2.6600 -5.1922 19 6 -2.8847 -3.7059 -5.2597 20 7 -3.7319 -3.4191 -6.2482 21 7 -3.4167 -2.2871 -6.7683 22 7 -2.3920 -1.7837 -6.1739 23 6 -1.7821 -0.5595 -6.4768 24 6 -1.4078 0.3031 -5.4549 25 6 -0.8019 1.5070 -5.7565 26 6 -0.5779 1.8588 -7.0750 27 6 -0.9547 1.0045 -8.0952 28 6 -1.5556 -0.2034 -7.7999 29 6 0.2250 -2.3396 -1.2655 30 1 -0.4850 0.8400 -0.0004 31 1 2.7376 -3.5139 0.7611 32 1 1.0438 -4.0624 0.8473 33 1 2.9023 -4.2507 -1.5684 34 1 2.3074 -5.6050 -0.5779 35 1 -0.0265 -5.0416 -1.2326 36 1 0.9810 -5.4021 -2.6546 37 1 -1.3396 -4.1101 -3.1299 38 1 -2.8932 -4.5872 -4.6354 39 1 -1.5861 0.0307 -4.4252 40 1 -0.5065 2.1762 -4.9621 41 1 -0.1074 2.8024 -7.3085 42 1 -0.7788 1.2823 -9.1240 43 1 -1.8493 -0.8702 -8.5970 44 1 0.0967 -1.3335 -1.6646 45 1 -0.6784 -2.6402 -0.7349 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008711480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = 102.608712 kcal Electronic energy + Delta-G solvation = -30085.895414 eV Core-core repulsion = 26105.725268 eV Total energy + Delta-G solvation = -3980.170146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.70331 -40.93914 -40.29412 -38.92091 -36.13684 -35.59947 -34.52002 -32.98053 -32.11497 -31.82831 -31.07421 -30.28479 -27.24513 -26.01804 -24.91969 -24.28794 -23.90383 -23.26056 -22.46911 -21.55565 -20.99993 -19.79549 -18.75784 -18.29255 -17.89974 -17.48163 -17.23133 -16.76616 -16.15480 -16.01166 -15.84767 -15.59896 -15.44511 -15.24480 -14.96262 -14.78341 -14.49966 -14.16849 -14.10617 -14.00587 -13.53475 -13.30550 -12.96112 -12.90954 -12.67759 -12.57116 -12.46226 -12.43954 -12.24839 -12.04627 -11.83441 -11.70448 -11.60632 -11.28125 -11.18868 -10.78019 -10.56894 -10.20080 -10.07681 -9.84998 -8.68838 -7.89761 -5.35252 -0.66129 0.21172 0.30036 0.84433 1.09429 1.40658 1.43505 1.52829 1.91229 1.96894 2.48427 2.55504 3.18386 3.27236 3.34919 3.59528 3.73589 3.75227 3.83856 3.95236 4.07871 4.08512 4.15229 4.26731 4.27914 4.36402 4.47532 4.48964 4.61330 4.80007 4.83837 4.86117 4.92614 5.11608 5.15238 5.17592 5.19384 5.21708 5.31106 5.35815 5.38231 5.40029 5.54043 5.62264 5.77302 5.80966 6.32569 6.41624 7.00444 7.08161 7.13331 7.85246 8.33672 9.14858 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009922 B = 0.004386 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2821.293585 B = 6382.343027 C = 8522.239964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.046 4.046 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.121 4.121 12 C -0.108 4.108 13 C 0.136 3.864 14 H 0.058 0.942 15 N -0.684 5.684 16 C 0.583 3.417 17 O -0.554 6.554 18 C -0.078 4.078 19 C 0.024 3.976 20 N -0.284 5.284 21 N -0.070 5.070 22 N -0.208 5.208 23 C 0.075 3.925 24 C -0.074 4.074 25 C -0.123 4.123 26 C -0.087 4.087 27 C -0.106 4.106 28 C -0.094 4.094 29 C 0.177 3.823 30 H 0.246 0.754 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.417 0.583 38 H 0.247 0.753 39 H 0.101 0.899 40 H 0.134 0.866 41 H 0.167 0.833 42 H 0.176 0.824 43 H 0.146 0.854 44 H 0.047 0.953 45 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.375 -6.524 -14.037 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.241 4.241 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.221 1.221 6 H -0.216 1.216 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.009 3.991 11 C -0.161 4.161 12 C -0.146 4.146 13 C 0.030 3.970 14 H 0.076 0.924 15 N -0.336 5.336 16 C 0.367 3.633 17 O -0.431 6.431 18 C -0.210 4.210 19 C -0.135 4.135 20 N -0.146 5.146 21 N -0.049 5.049 22 N 0.001 4.999 23 C -0.015 4.015 24 C -0.094 4.094 25 C -0.142 4.142 26 C -0.105 4.105 27 C -0.124 4.124 28 C -0.114 4.114 29 C 0.050 3.950 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.255 0.745 38 H 0.263 0.737 39 H 0.119 0.881 40 H 0.152 0.848 41 H 0.184 0.816 42 H 0.194 0.806 43 H 0.163 0.837 44 H 0.066 0.934 45 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -2.967 -5.598 -15.197 16.465 hybrid contribution 0.610 0.821 1.488 1.806 sum -2.357 -4.778 -13.709 14.708 Atomic orbital electron populations 1.70170 1.06595 1.25439 1.55304 1.25717 0.95950 1.01320 1.01159 0.85365 0.78959 0.80463 0.76718 1.18897 1.22089 1.21581 1.19517 0.92890 0.86149 1.40761 0.91535 1.44241 1.35907 1.02763 1.50362 1.21197 0.97535 0.85678 0.94687 1.21895 0.97034 1.00103 0.97019 1.21676 0.99225 0.93689 1.00006 1.21625 0.86055 0.98411 0.90860 0.92422 1.45524 1.26265 1.31079 1.30772 1.16892 0.83005 0.82804 0.80607 1.90906 1.47105 1.31501 1.73599 1.22243 1.03962 0.95203 0.99631 1.24602 0.90564 1.00145 0.98234 1.74871 1.23305 1.06469 1.09995 1.78330 1.00830 1.06336 1.19366 1.44853 1.19143 1.14496 1.21456 1.17777 1.03928 0.83778 0.95982 1.20957 0.97183 0.93722 0.97551 1.21263 0.98609 0.95532 0.98805 1.21774 0.96605 1.00889 0.91258 1.21481 0.97144 0.92009 1.01738 1.21257 0.98328 0.98965 0.92807 1.20802 0.88060 0.97694 0.88415 0.94468 0.92805 0.96004 0.92966 0.88400 0.90324 0.89126 0.74476 0.73665 0.88073 0.84849 0.81578 0.80644 0.83663 0.93416 0.98164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.03 11.19 21.65 0.24 -55.79 16 2 C -0.05 -2.61 4.92 84.86 0.42 -2.19 16 3 Si 0.96 46.04 29.59 68.60 2.03 48.07 16 4 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 7 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 8 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 9 N -0.61 -30.14 2.99 -699.12 -2.09 -32.23 16 10 C 0.13 5.15 6.52 86.36 0.56 5.71 16 11 C -0.12 -3.46 6.08 30.67 0.19 -3.28 16 12 C -0.11 -2.82 5.36 30.62 0.16 -2.65 16 13 C 0.14 4.84 2.57 45.07 0.12 4.95 16 14 H 0.06 2.39 7.65 -2.39 -0.02 2.38 16 15 N -0.68 -19.98 5.06 -445.71 -2.25 -22.23 16 16 C 0.58 20.05 7.40 86.59 0.64 20.69 16 17 O -0.55 -23.84 12.86 -4.14 -0.05 -23.89 16 18 C -0.08 -2.34 6.79 40.36 0.27 -2.07 16 19 C 0.02 0.57 11.54 84.19 0.97 1.54 16 20 N -0.28 -8.11 12.34 -57.47 -0.71 -8.82 16 21 N -0.07 -2.18 12.94 37.02 0.48 -1.70 16 22 N -0.21 -6.64 3.49 -176.71 -0.62 -7.25 16 23 C 0.07 2.33 5.90 38.12 0.23 2.55 16 24 C -0.07 -2.50 7.43 22.39 0.17 -2.34 16 25 C -0.12 -3.49 10.04 22.25 0.22 -3.27 16 26 C -0.09 -1.76 10.04 22.29 0.22 -1.54 16 27 C -0.11 -1.94 10.04 22.25 0.22 -1.72 16 28 C -0.09 -2.26 9.81 22.39 0.22 -2.04 16 29 C 0.18 8.42 4.88 86.37 0.42 8.85 16 30 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 31 H 0.05 2.05 7.93 -2.38 -0.02 2.03 16 32 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 2.08 8.14 -2.38 -0.02 2.06 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.42 8.37 7.68 -92.70 -0.71 7.66 16 38 H 0.25 3.05 7.60 -2.91 -0.02 3.03 16 39 H 0.10 4.09 6.68 -2.91 -0.02 4.07 16 40 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 41 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 44 H 0.05 2.74 6.05 -2.39 -0.01 2.72 16 45 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 Total: -1.00 -77.76 371.55 3.18 -74.59 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.31 Total: 19.87 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: 5.84 Total: 9.40 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -4.95 Total: -128.03 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.76 3.18 -74.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008711480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.196 kcal (2) G-P(sol) polarization free energy of solvation -77.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds