Wall clock time and date at job start Sat Apr 11 2020 06:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00040 * 2 1 4 4 H 1.48495 * 109.46857 * 274.97570 * 3 2 1 5 5 H 1.48500 * 109.47061 * 34.97237 * 3 2 1 6 6 H 1.48500 * 109.47312 * 154.97488 * 3 2 1 7 7 C 1.38810 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00270 * 341.26761 * 7 2 1 9 9 N 1.36947 * 119.99761 * 161.26765 * 7 2 1 10 10 C 1.46923 * 120.62819 * 154.19328 * 9 7 2 11 11 C 1.53194 * 108.77565 * 126.36942 * 10 9 7 12 12 C 1.53030 * 109.31326 * 54.63102 * 11 10 9 13 13 C 1.53039 * 109.54156 * 298.63560 * 12 11 10 14 14 H 1.08998 * 109.49568 * 301.38523 * 13 12 11 15 15 N 1.46496 * 109.50169 * 181.31615 * 13 12 11 16 16 C 1.34785 * 120.00041 * 154.99590 * 15 13 12 17 17 O 1.21626 * 119.99759 * 5.24223 * 16 15 13 18 18 C 1.47145 * 120.00086 * 185.23391 * 16 15 13 19 19 C 1.37078 * 127.21142 * 353.88281 * 18 16 15 20 20 N 1.33309 * 106.37289 * 179.97438 * 19 18 16 21 21 N 1.28506 * 109.49850 * 359.72916 * 20 19 18 22 22 N 1.28716 * 110.66795 * 0.45341 * 21 20 19 23 23 C 1.40081 * 126.05725 * 179.81913 * 22 21 20 24 24 C 1.38865 * 120.06945 * 314.86791 * 23 22 21 25 25 C 1.38115 * 119.93143 * 180.02562 * 24 23 22 26 26 C 1.38283 * 120.06987 * 359.97438 * 25 24 23 27 27 C 1.38286 * 120.13814 * 0.25638 * 26 25 24 28 28 C 1.38117 * 120.06998 * 359.49180 * 27 26 25 29 29 C 1.46920 * 120.62787 * 334.16279 * 9 7 2 30 30 H 0.96996 * 120.00377 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.59085 * 6.57814 * 10 9 7 32 32 H 1.09003 * 109.58705 * 246.15148 * 10 9 7 33 33 H 1.08999 * 109.49652 * 294.67671 * 11 10 9 34 34 H 1.08998 * 109.49701 * 174.58251 * 11 10 9 35 35 H 1.09007 * 109.46331 * 178.61235 * 12 11 10 36 36 H 1.09009 * 109.45355 * 58.65009 * 12 11 10 37 37 H 0.96996 * 119.99900 * 335.00322 * 15 13 12 38 38 H 1.07999 * 126.81217 * 359.97112 * 19 18 16 39 39 H 1.07998 * 120.03908 * 359.97438 * 24 23 22 40 40 H 1.08001 * 119.96770 * 179.97438 * 25 24 23 41 41 H 1.07997 * 119.93119 * 179.97438 * 26 25 24 42 42 H 1.07996 * 119.96773 * 179.73961 * 27 26 25 43 43 H 1.07995 * 120.03753 * 180.25118 * 28 27 26 44 44 H 1.09006 * 109.58148 * 113.84924 * 29 9 7 45 45 H 1.09001 * 109.59115 * 353.42247 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1070 -1.3948 5 1 1.5041 2.6200 0.8025 6 1 3.5964 1.4121 0.5922 7 6 2.0102 -1.2021 0.0005 8 1 1.5132 -2.1126 0.3013 9 7 3.3253 -1.2337 -0.3803 10 6 4.2233 -2.2853 0.1159 11 6 4.8925 -2.9677 -1.0813 12 6 5.5810 -1.9101 -1.9469 13 6 4.5379 -0.9225 -2.4748 14 1 3.7873 -1.4608 -3.0533 15 7 5.1934 0.0711 -3.3287 16 6 4.4881 0.7097 -4.2834 17 8 3.2882 0.5322 -4.3741 18 6 5.1695 1.6215 -5.2158 19 6 6.4810 2.0184 -5.1774 20 7 6.6552 2.8407 -6.2121 21 7 5.5513 2.9549 -6.8599 22 7 4.6253 2.2524 -6.3068 23 6 3.2988 2.1458 -6.7443 24 6 2.5959 3.2836 -7.1180 25 6 1.2880 3.1753 -7.5484 26 6 0.6785 1.9354 -7.6077 27 6 1.3742 0.8010 -7.2317 28 6 2.6841 0.9021 -6.8054 29 6 3.8647 -0.2169 -1.2935 30 1 -0.4850 0.8400 -0.0004 31 1 3.6491 -3.0195 0.6811 32 1 4.9855 -1.8424 0.7570 33 1 4.1382 -3.4869 -1.6725 34 1 5.6326 -3.6841 -0.7248 35 1 6.0789 -2.3957 -2.7863 36 1 6.3179 -1.3745 -1.3482 37 1 6.1351 0.2695 -3.2071 38 1 7.2254 1.7235 -4.4527 39 1 3.0711 4.2523 -7.0715 40 1 0.7406 4.0599 -7.8388 41 1 -0.3444 1.8534 -7.9442 42 1 0.8942 -0.1654 -7.2752 43 1 3.2282 0.0154 -6.5157 44 1 4.5977 0.3947 -0.7673 45 1 3.0539 0.4137 -1.6583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008711483.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:48 Heat of formation + Delta-G solvation = 106.576535 kcal Electronic energy + Delta-G solvation = -30162.007065 eV Core-core repulsion = 26182.008977 eV Total energy + Delta-G solvation = -3979.998088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.74486 -41.09383 -40.31391 -39.15923 -36.23348 -35.65857 -34.56916 -33.07021 -32.55654 -32.09759 -31.10266 -30.50836 -27.21094 -26.12386 -24.97481 -24.58703 -24.00320 -23.28845 -22.50869 -21.73757 -21.07315 -19.88276 -18.88652 -18.38377 -17.93563 -17.64246 -17.48872 -16.98031 -16.23628 -16.17776 -15.87847 -15.64649 -15.60018 -15.43337 -15.00478 -14.94638 -14.57488 -14.47916 -14.12089 -14.09808 -13.89546 -13.44633 -13.35069 -12.94153 -12.69406 -12.57340 -12.53549 -12.46791 -12.41775 -11.84744 -11.79244 -11.72820 -11.65154 -11.37101 -11.28374 -10.88829 -10.80195 -10.29599 -10.08312 -9.87799 -8.96111 -8.21307 -5.51607 -0.69152 0.19197 0.26280 0.80292 1.05546 1.23201 1.27791 1.36930 1.81377 1.86795 2.35004 2.53919 2.99608 3.16645 3.27845 3.40969 3.56779 3.71792 3.77194 3.80424 4.01735 4.04847 4.06895 4.15668 4.26622 4.33136 4.34587 4.39381 4.46904 4.65960 4.76342 4.80644 4.84101 4.87851 4.98408 5.08536 5.12254 5.15341 5.17465 5.23761 5.28535 5.34678 5.35724 5.56079 5.79117 5.82673 6.08345 6.27697 6.86916 6.93887 7.03841 7.59270 7.97058 8.98354 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010700 B = 0.004279 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2616.128458 B = 6541.434892 C = 7759.124391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.034 4.034 3 Si 0.944 3.056 4 H -0.302 1.302 5 H -0.313 1.313 6 H -0.246 1.246 7 C -0.243 4.243 8 H 0.060 0.940 9 N -0.618 5.618 10 C 0.136 3.864 11 C -0.124 4.124 12 C -0.107 4.107 13 C 0.141 3.859 14 H 0.063 0.937 15 N -0.687 5.687 16 C 0.582 3.418 17 O -0.553 6.553 18 C -0.081 4.081 19 C 0.026 3.974 20 N -0.285 5.285 21 N -0.070 5.070 22 N -0.208 5.208 23 C 0.070 3.930 24 C -0.102 4.102 25 C -0.112 4.112 26 C -0.092 4.092 27 C -0.119 4.119 28 C -0.072 4.072 29 C 0.114 3.886 30 H 0.259 0.741 31 H 0.056 0.944 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.422 0.578 38 H 0.250 0.750 39 H 0.138 0.862 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.118 0.882 44 H 0.040 0.960 45 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.510 0.883 -14.107 19.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.228 4.228 3 Si 0.775 3.225 4 H -0.231 1.231 5 H -0.243 1.243 6 H -0.170 1.170 7 C -0.373 4.373 8 H 0.077 0.923 9 N -0.342 5.342 10 C 0.012 3.988 11 C -0.163 4.163 12 C -0.145 4.145 13 C 0.035 3.965 14 H 0.082 0.918 15 N -0.340 5.340 16 C 0.366 3.634 17 O -0.430 6.430 18 C -0.214 4.214 19 C -0.133 4.133 20 N -0.147 5.147 21 N -0.048 5.048 22 N 0.001 4.999 23 C -0.020 4.020 24 C -0.122 4.122 25 C -0.130 4.130 26 C -0.110 4.110 27 C -0.138 4.138 28 C -0.093 4.093 29 C -0.012 4.012 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.109 0.891 37 H 0.261 0.739 38 H 0.266 0.734 39 H 0.156 0.844 40 H 0.187 0.813 41 H 0.184 0.816 42 H 0.168 0.832 43 H 0.136 0.864 44 H 0.058 0.942 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 12.954 1.765 -15.275 20.106 hybrid contribution -0.370 0.404 1.112 1.239 sum 12.583 2.169 -14.164 19.070 Atomic orbital electron populations 1.69929 1.07219 1.26821 1.56291 1.25802 0.95787 1.00593 1.00654 0.85980 0.79686 0.81053 0.75754 1.23111 1.24250 1.16987 1.18926 0.86148 0.93372 1.38821 0.92254 1.44442 1.07216 1.31454 1.51131 1.21280 0.92350 0.89871 0.95303 1.21918 0.99933 0.97759 0.96736 1.21704 0.96343 0.95820 1.00646 1.21508 0.95952 0.88966 0.90047 0.91829 1.45554 1.14429 1.40968 1.33066 1.16957 0.86065 0.79681 0.80740 1.90942 1.15125 1.64122 1.72846 1.22221 0.96013 1.07278 0.95873 1.24649 0.93797 0.96041 0.98846 1.74887 1.15515 1.17353 1.06906 1.78361 0.92338 1.14164 1.19984 1.44869 1.09292 1.28667 1.17079 1.17841 0.80050 0.96631 1.07429 1.21239 0.95671 0.96618 0.98635 1.21465 0.93043 0.99703 0.98766 1.21821 1.01444 0.91662 0.96032 1.21380 0.92699 1.01201 0.98480 1.21043 0.96895 0.95049 0.96300 1.21717 0.96479 0.92077 0.90910 0.93245 0.92543 0.93660 0.93266 0.87760 0.88696 0.89138 0.73942 0.73407 0.84389 0.81341 0.81624 0.83196 0.86442 0.94189 0.94605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.36 13.97 21.65 0.30 -62.05 16 2 C -0.03 -2.05 5.29 84.86 0.45 -1.60 16 3 Si 0.94 49.59 24.30 68.60 1.67 51.25 16 4 H -0.30 -16.41 6.70 99.48 0.67 -15.74 16 5 H -0.31 -16.66 7.11 99.48 0.71 -15.95 16 6 H -0.25 -11.73 6.23 99.48 0.62 -11.11 16 7 C -0.24 -13.92 10.08 84.03 0.85 -13.07 16 8 H 0.06 3.67 8.05 -2.91 -0.02 3.64 16 9 N -0.62 -28.28 2.80 -699.09 -1.96 -30.24 16 10 C 0.14 4.64 6.52 86.36 0.56 5.21 16 11 C -0.12 -3.09 6.08 30.67 0.19 -2.91 16 12 C -0.11 -2.29 5.35 30.62 0.16 -2.13 16 13 C 0.14 4.43 2.57 45.07 0.12 4.55 16 14 H 0.06 2.42 7.66 -2.39 -0.02 2.41 16 15 N -0.69 -17.40 5.07 -445.71 -2.26 -19.66 16 16 C 0.58 18.51 7.40 86.58 0.64 19.15 16 17 O -0.55 -22.86 12.93 -4.11 -0.05 -22.91 16 18 C -0.08 -2.28 6.80 40.36 0.27 -2.01 16 19 C 0.03 0.57 11.55 84.20 0.97 1.54 16 20 N -0.28 -7.68 12.34 -57.46 -0.71 -8.39 16 21 N -0.07 -2.10 12.95 37.02 0.48 -1.62 16 22 N -0.21 -6.32 3.48 -176.72 -0.62 -6.94 16 23 C 0.07 2.10 5.88 38.12 0.22 2.32 16 24 C -0.10 -2.57 9.83 22.39 0.22 -2.35 16 25 C -0.11 -2.20 10.04 22.25 0.22 -1.98 16 26 C -0.09 -1.80 10.04 22.29 0.22 -1.57 16 27 C -0.12 -2.90 10.04 22.25 0.22 -2.68 16 28 C -0.07 -2.14 7.44 22.39 0.17 -1.98 16 29 C 0.11 4.80 3.74 86.36 0.32 5.12 16 30 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 31 H 0.06 2.00 7.93 -2.39 -0.02 1.99 16 32 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.42 6.44 7.64 -92.71 -0.71 5.74 16 38 H 0.25 2.43 7.57 -2.91 -0.02 2.41 16 39 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 40 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 41 H 0.17 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.12 3.68 6.76 -2.91 -0.02 3.66 16 44 H 0.04 1.58 6.89 -2.38 -0.02 1.56 16 45 H 0.04 1.84 4.21 -2.39 -0.01 1.83 16 Total: -1.00 -84.01 364.45 2.86 -81.15 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.19 Total: 13.79 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.81 Total: 5.61 kcal Atomic # 7 Polarization: -124.14 SS G_CDS: -4.76 Total: -128.90 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.91 kcal Atomic # 14 Polarization: 49.59 SS G_CDS: 1.67 Total: 51.25 kcal Total: -84.01 2.86 -81.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008711483.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.731 kcal (2) G-P(sol) polarization free energy of solvation -84.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds