Wall clock time and date at job start Sat Apr 11 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00191 * 2 1 4 4 H 1.48502 * 109.46880 * 239.99927 * 3 2 1 5 5 H 1.48501 * 109.47157 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47242 * 119.99663 * 3 2 1 7 7 C 1.38808 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00417 * 197.35803 * 7 2 1 9 9 N 1.36941 * 119.99743 * 17.36296 * 7 2 1 10 10 C 1.46926 * 120.63170 * 27.67008 * 9 7 2 11 11 C 1.53194 * 108.77264 * 126.41601 * 10 9 7 12 12 C 1.53037 * 109.31546 * 54.63474 * 11 10 9 13 13 C 1.53039 * 109.53825 * 298.63656 * 12 11 10 14 14 H 1.09001 * 109.49524 * 301.41138 * 13 12 11 15 15 N 1.46501 * 109.49714 * 181.31814 * 13 12 11 16 16 C 1.34777 * 120.00022 * 155.15970 * 15 13 12 17 17 O 1.21576 * 119.99903 * 359.97438 * 16 15 13 18 18 C 1.47679 * 120.00155 * 179.97438 * 16 15 13 19 19 C 1.39695 * 120.07611 * 359.72925 * 18 16 15 20 20 C 1.37736 * 119.91556 * 179.76407 * 19 18 16 21 21 C 1.39024 * 120.08271 * 0.51166 * 20 19 18 22 22 N 1.39926 * 119.92223 * 179.76590 * 21 20 19 23 23 C 1.36352 * 127.11545 * 179.65519 * 22 21 20 24 24 N 1.30502 * 107.19482 * 179.86749 * 23 22 21 25 25 N 1.28535 * 109.92062 * 0.41148 * 24 23 22 26 26 C 1.30505 * 109.91764 * 359.73677 * 25 24 23 27 27 C 1.39028 * 120.15769 * 359.73664 * 21 20 19 28 28 C 1.37729 * 120.08104 * 0.02562 * 27 21 20 29 29 C 1.46930 * 120.62921 * 207.69585 * 9 7 2 30 30 H 0.97007 * 119.99487 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.58752 * 246.19919 * 10 9 7 32 32 H 1.08998 * 109.58713 * 6.63208 * 10 9 7 33 33 H 1.09001 * 109.49473 * 174.58845 * 11 10 9 34 34 H 1.09007 * 109.49602 * 294.68211 * 11 10 9 35 35 H 1.09002 * 109.46182 * 178.61693 * 12 11 10 36 36 H 1.09000 * 109.44846 * 58.64624 * 12 11 10 37 37 H 0.96995 * 120.00133 * 335.15869 * 15 13 12 38 38 H 1.07998 * 120.04323 * 359.97438 * 19 18 16 39 39 H 1.08006 * 119.95896 * 180.24863 * 20 19 18 40 40 H 1.08005 * 126.40450 * 0.02562 * 23 22 21 41 41 H 1.08001 * 126.40377 * 179.97438 * 26 25 24 42 42 H 1.07999 * 119.95481 * 179.97438 * 27 21 20 43 43 H 1.08009 * 120.04134 * 179.97438 * 28 27 21 44 44 H 1.08999 * 109.58472 * 353.36739 * 29 9 7 45 45 H 1.08997 * 109.58585 * 113.65564 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0533 -1.2234 0.2796 9 7 1.3722 -2.3612 -0.3529 10 6 0.2276 -2.3349 -1.2737 11 6 0.5005 -3.3055 -2.4271 12 6 0.8182 -4.6904 -1.8588 13 6 2.0739 -4.6104 -0.9876 14 1 2.9077 -4.2407 -1.5844 15 7 2.3953 -5.9425 -0.4695 16 6 3.6616 -6.2415 -0.1182 17 8 4.5373 -5.4058 -0.2317 18 6 3.9855 -7.5841 0.4046 19 6 2.9795 -8.5437 0.5410 20 6 3.2862 -9.7965 1.0244 21 6 4.5930 -10.1031 1.3864 22 7 4.8999 -11.3753 1.8816 23 6 6.1235 -11.8331 2.2719 24 7 5.9655 -13.0664 2.6684 25 7 4.7336 -13.4117 2.5449 26 6 4.0383 -12.4154 2.0682 27 6 5.5958 -9.1489 1.2568 28 6 5.2975 -7.8957 0.7696 29 6 1.8189 -3.6546 0.1821 30 1 -0.4850 0.8401 -0.0004 31 1 -0.6745 -2.6410 -0.7442 32 1 0.0985 -1.3267 -1.6674 33 1 -0.3804 -3.3678 -3.0662 34 1 1.3492 -2.9481 -3.0104 35 1 0.9886 -5.3889 -2.6781 36 1 -0.0210 -5.0363 -1.2553 37 1 1.6967 -6.6093 -0.3793 38 1 1.9633 -8.3047 0.2646 39 1 2.5097 -10.5402 1.1263 40 1 7.0499 -11.2780 2.2582 41 1 2.9785 -12.4150 1.8600 42 1 6.6098 -9.3905 1.5394 43 1 6.0770 -7.1547 0.6696 44 1 2.7397 -3.5172 0.7490 45 1 1.0476 -4.0671 0.8324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008854162.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:52 Heat of formation + Delta-G solvation = 102.577902 kcal Electronic energy + Delta-G solvation = -28314.642510 eV Core-core repulsion = 24334.471028 eV Total energy + Delta-G solvation = -3980.171482 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.73598 -40.56089 -39.08439 -37.39706 -35.35982 -34.51310 -32.64011 -31.99179 -30.94013 -30.70731 -30.49286 -28.55779 -25.35185 -25.25187 -24.22153 -22.98612 -22.18995 -21.95944 -21.53924 -20.43028 -19.61750 -19.25852 -17.80511 -16.86303 -16.68204 -16.29037 -16.21219 -15.51397 -15.18929 -15.03646 -14.80740 -14.64664 -14.31678 -14.14847 -13.98848 -13.68263 -13.41810 -13.29988 -13.11507 -12.47944 -12.46068 -12.03521 -11.89910 -11.76681 -11.67075 -11.15711 -10.99971 -10.96054 -10.82044 -10.33195 -10.30488 -10.14434 -10.01338 -9.96256 -9.75123 -9.72096 -9.67500 -9.15060 -8.92043 -8.45002 -6.72720 -5.82394 -3.24693 -0.08084 0.65828 1.41760 1.78954 2.35953 2.60955 3.09780 3.38407 3.43279 3.43715 3.46138 3.79600 3.92103 4.03927 4.18615 4.35829 4.46700 4.53850 4.64628 4.67472 4.92711 5.06426 5.19117 5.26283 5.31864 5.44262 5.45218 5.50911 5.55034 5.61997 5.70157 5.78389 5.96944 5.99847 6.05508 6.15126 6.40988 6.43746 6.53005 6.55928 6.60904 6.75694 6.89215 7.30051 7.54125 7.59498 7.79048 8.12792 8.20828 8.41773 9.17899 9.80062 10.35250 11.26298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024666 B = 0.001991 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.887984 B =14061.943078 C =14663.795861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.125 3.875 14 H 0.089 0.911 15 N -0.714 5.714 16 C 0.551 3.449 17 O -0.527 6.527 18 C -0.124 4.124 19 C -0.059 4.059 20 C -0.134 4.134 21 C 0.145 3.855 22 N -0.430 5.430 23 C 0.162 3.838 24 N -0.291 5.291 25 N -0.291 5.291 26 C 0.161 3.839 27 C -0.134 4.134 28 C -0.033 4.033 29 C 0.142 3.858 30 H 0.254 0.746 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.393 0.607 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.224 0.776 41 H 0.224 0.776 42 H 0.140 0.860 43 H 0.151 0.849 44 H 0.058 0.942 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.783 -21.470 -0.688 22.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.041 3.959 11 C -0.180 4.180 12 C -0.153 4.153 13 C 0.020 3.980 14 H 0.107 0.893 15 N -0.365 5.365 16 C 0.337 3.663 17 O -0.403 6.403 18 C -0.128 4.128 19 C -0.079 4.079 20 C -0.153 4.153 21 C 0.052 3.948 22 N -0.117 5.117 23 C -0.124 4.124 24 N -0.128 5.128 25 N -0.128 5.128 26 C -0.125 4.125 27 C -0.154 4.154 28 C -0.052 4.052 29 C 0.014 3.986 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.108 0.892 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.228 0.772 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.240 0.760 41 H 0.240 0.760 42 H 0.158 0.842 43 H 0.169 0.831 44 H 0.076 0.924 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 5.641 -22.143 -0.180 22.851 hybrid contribution -0.357 1.775 -0.412 1.857 sum 5.283 -20.368 -0.592 21.050 Atomic orbital electron populations 1.70028 1.05241 1.25662 1.53864 1.25025 0.95312 0.98433 1.00819 0.86346 0.78911 0.83137 0.78260 1.20945 1.21630 1.20827 1.19172 0.92807 0.84660 1.41537 0.91576 1.43993 1.35619 1.01005 1.50357 1.20855 0.88559 0.98632 0.87861 1.22185 1.00523 0.95082 1.00170 1.21685 0.96631 0.98759 0.98243 1.21828 0.98021 0.80824 0.97310 0.89336 1.46087 1.08865 1.16113 1.65431 1.18073 0.83170 0.86674 0.78398 1.90839 1.46890 1.49154 1.53465 1.20283 0.94614 0.94883 1.02975 1.21235 0.99428 0.91640 0.95552 1.20759 0.94084 0.98233 1.02269 1.17911 0.95199 0.82743 0.98993 1.44315 1.09488 1.10995 1.46950 1.26856 0.90549 0.94161 1.00851 1.74266 1.10448 1.09757 1.18298 1.74264 0.98471 1.23606 1.16419 1.26840 0.99683 0.83540 1.02436 1.20838 0.98769 0.92846 1.02916 1.21221 0.96208 0.95373 0.92416 1.21176 0.98013 0.86893 0.92499 0.93571 0.96271 0.89193 0.92630 0.92357 0.93029 0.92199 0.77205 0.84121 0.84313 0.75976 0.75996 0.84249 0.83085 0.92353 0.96461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 7 C -0.25 -6.93 9.59 -15.06 -0.14 -7.07 16 8 H 0.07 1.83 7.89 -52.49 -0.41 1.41 16 9 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 10 C 0.17 3.79 5.31 -3.71 -0.02 3.77 16 11 C -0.14 -2.46 6.08 -26.61 -0.16 -2.62 16 12 C -0.11 -1.69 5.35 -26.69 -0.14 -1.84 16 13 C 0.13 2.07 2.60 -67.81 -0.18 1.89 16 14 H 0.09 1.70 7.58 -51.93 -0.39 1.30 16 15 N -0.71 -8.94 5.03 -54.69 -0.28 -9.22 16 16 C 0.55 7.41 7.73 -12.41 -0.10 7.31 16 17 O -0.53 -9.40 16.00 5.30 0.08 -9.31 16 18 C -0.12 -1.17 5.87 -104.95 -0.62 -1.79 16 19 C -0.06 -0.39 9.53 -39.22 -0.37 -0.76 16 20 C -0.13 -0.73 9.46 -39.47 -0.37 -1.11 16 21 C 0.14 0.94 6.65 -83.58 -0.56 0.38 16 22 N -0.43 -3.03 2.99 -63.17 -0.19 -3.22 16 23 C 0.16 1.21 12.06 -89.17 -1.08 0.13 16 24 N -0.29 -3.18 12.19 29.85 0.36 -2.81 16 25 N -0.29 -3.16 12.19 29.85 0.36 -2.79 16 26 C 0.16 1.17 12.06 -89.16 -1.08 0.10 16 27 C -0.13 -0.85 9.46 -39.47 -0.37 -1.22 16 28 C -0.03 -0.28 9.58 -39.22 -0.38 -0.65 16 29 C 0.14 2.94 6.09 -3.71 -0.02 2.92 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 3.50 6.62 -40.82 -0.27 3.23 16 38 H 0.14 0.61 6.39 -52.49 -0.34 0.27 16 39 H 0.14 0.39 6.84 -52.48 -0.36 0.03 16 40 H 0.22 0.75 7.17 -52.48 -0.38 0.37 16 41 H 0.22 0.67 7.17 -52.49 -0.38 0.29 16 42 H 0.14 0.53 6.84 -52.49 -0.36 0.17 16 43 H 0.15 1.32 7.64 -52.48 -0.40 0.91 16 44 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 45 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -35.43 371.15 -10.33 -45.76 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.68 Total: 0.01 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -5.67 Total: -0.58 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: 0.37 Total: -58.14 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.43 -10.33 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008854162.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.342 kcal (2) G-P(sol) polarization free energy of solvation -35.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds