Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48502 * 109.47117 * 270.00138 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99989 * 3 2 1 6 6 H 1.48492 * 109.47449 * 150.00129 * 3 2 1 7 7 C 1.38816 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99640 * 197.36201 * 7 2 1 9 9 N 1.36933 * 119.99919 * 17.35942 * 7 2 1 10 10 C 1.46930 * 120.63017 * 207.66422 * 9 7 2 11 11 C 1.53190 * 108.77781 * 233.63233 * 10 9 7 12 12 C 1.53042 * 109.33836 * 305.37999 * 11 10 9 13 13 C 1.53044 * 109.53646 * 61.31429 * 12 11 10 14 14 H 1.09002 * 109.49483 * 58.65347 * 13 12 11 15 15 N 1.46504 * 109.49342 * 178.71469 * 13 12 11 16 16 C 1.34781 * 119.99966 * 204.93783 * 15 13 12 17 17 O 1.21577 * 119.99698 * 359.97438 * 16 15 13 18 18 C 1.47671 * 120.00316 * 180.02562 * 16 15 13 19 19 C 1.39700 * 120.07474 * 359.95083 * 18 16 15 20 20 C 1.37735 * 119.91431 * 180.02562 * 19 18 16 21 21 C 1.39026 * 120.08382 * 359.97438 * 20 19 18 22 22 N 1.39924 * 119.92372 * 179.97438 * 21 20 19 23 23 C 1.36362 * 127.11432 * 359.68966 * 22 21 20 24 24 N 1.30502 * 107.19439 * 179.83201 * 23 22 21 25 25 N 1.28540 * 109.92061 * 0.43907 * 24 23 22 26 26 C 1.30502 * 109.91779 * 359.71800 * 25 24 23 27 27 C 1.39025 * 120.15917 * 0.02562 * 21 20 19 28 28 C 1.37731 * 120.08115 * 0.02562 * 27 21 20 29 29 C 1.46927 * 120.63387 * 27.68625 * 9 7 2 30 30 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58722 * 353.41999 * 10 9 7 32 32 H 1.09000 * 109.58289 * 113.70117 * 10 9 7 33 33 H 1.08991 * 109.49861 * 65.31482 * 11 10 9 34 34 H 1.08999 * 109.49877 * 185.38404 * 11 10 9 35 35 H 1.09002 * 109.43278 * 301.31384 * 12 11 10 36 36 H 1.08993 * 109.49048 * 181.35189 * 12 11 10 37 37 H 0.97001 * 120.00361 * 24.93785 * 15 13 12 38 38 H 1.07998 * 120.04632 * 0.04879 * 19 18 16 39 39 H 1.08003 * 119.95967 * 180.25526 * 20 19 18 40 40 H 1.08002 * 126.39732 * 359.97376 * 23 22 21 41 41 H 1.08005 * 126.40052 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.96164 * 179.97438 * 27 21 20 43 43 H 1.08005 * 120.04194 * 180.02562 * 28 27 21 44 44 H 1.09005 * 109.58637 * 6.58230 * 29 9 7 45 45 H 1.09000 * 109.70793 * 246.22678 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6549 0.1784 11 6 2.0752 -4.6090 -0.9925 12 6 0.8202 -4.6886 -1.8647 13 6 0.5015 -3.3028 -2.4306 14 1 1.3498 -2.9440 -3.0135 15 7 -0.6822 -3.3860 -3.2899 16 6 -0.8695 -2.4786 -4.2687 17 8 -0.0564 -1.5907 -4.4381 18 6 -2.0628 -2.5620 -5.1345 19 6 -2.9981 -3.5816 -4.9412 20 6 -4.1097 -3.6566 -5.7510 21 6 -4.3018 -2.7191 -6.7595 22 7 -5.4319 -2.7988 -7.5806 23 6 -6.4257 -3.7309 -7.5244 24 7 -7.2840 -3.4367 -8.4625 25 7 -6.8913 -2.3944 -9.1042 26 6 -5.7645 -1.9640 -8.6061 27 6 -3.3731 -1.7031 -6.9548 28 6 -2.2586 -1.6224 -6.1495 29 6 0.2280 -2.3339 -1.2760 30 1 -0.4850 0.8400 0.0004 31 1 2.7402 -3.5178 0.7458 32 1 1.0482 -4.0686 0.8280 33 1 2.9090 -4.2382 -1.5886 34 1 2.3152 -5.6004 -0.6082 35 1 -0.0188 -5.0365 -1.2620 36 1 0.9912 -5.3853 -2.6852 37 1 -1.3311 -4.0942 -3.1545 38 1 -2.8500 -4.3098 -4.1575 39 1 -4.8353 -4.4421 -5.5996 40 1 -6.4914 -4.5566 -6.8315 41 1 -5.2008 -1.1065 -8.9431 42 1 -3.5253 -0.9767 -7.7394 43 1 -1.5378 -0.8326 -6.3015 44 1 0.0984 -1.3252 -1.6683 45 1 -0.6756 -2.6397 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008854167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 102.914004 kcal Electronic energy + Delta-G solvation = -28681.223917 eV Core-core repulsion = 24701.067010 eV Total energy + Delta-G solvation = -3980.156907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65281 -40.40465 -38.93895 -37.33658 -35.24891 -34.32811 -32.81241 -31.93547 -30.88607 -30.66874 -30.03849 -28.66625 -25.33632 -25.16185 -24.11671 -22.90775 -22.23022 -21.85473 -21.43466 -20.27275 -19.54714 -19.17271 -17.69479 -16.84384 -16.59796 -16.18993 -16.13490 -15.40614 -15.19002 -14.93930 -14.61650 -14.49262 -14.20138 -14.06507 -13.95102 -13.61917 -13.42829 -13.13863 -13.02900 -12.49035 -12.38582 -11.98497 -11.92554 -11.64599 -11.56658 -11.07089 -10.92751 -10.84368 -10.77032 -10.55912 -10.29689 -10.10074 -9.99674 -9.93569 -9.66692 -9.63003 -9.57577 -9.01468 -8.66199 -8.47907 -6.71821 -5.80559 -3.23746 0.04081 0.77934 1.51816 1.88032 2.43182 2.76159 3.26675 3.40412 3.46725 3.47263 3.61224 3.89384 4.01549 4.12864 4.28811 4.47633 4.50694 4.65001 4.74954 4.78405 5.03485 5.17612 5.26872 5.32991 5.37795 5.46611 5.52634 5.54988 5.57886 5.65520 5.80838 5.91627 5.99847 6.05442 6.10023 6.25613 6.35119 6.39455 6.50785 6.60987 6.69352 6.79789 6.89581 7.20893 7.65285 7.72237 7.80187 8.20222 8.40206 8.44668 9.17903 9.81807 10.36219 11.27468 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002421 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.390176 B =11564.851440 C =12695.329905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.903 3.097 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.084 0.916 15 N -0.712 5.712 16 C 0.550 3.450 17 O -0.522 6.522 18 C -0.119 4.119 19 C -0.060 4.060 20 C -0.133 4.133 21 C 0.142 3.858 22 N -0.429 5.429 23 C 0.161 3.839 24 N -0.292 5.292 25 N -0.292 5.292 26 C 0.162 3.838 27 C -0.133 4.133 28 C -0.033 4.033 29 C 0.166 3.834 30 H 0.254 0.746 31 H 0.056 0.944 32 H 0.019 0.981 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.391 0.609 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.223 0.777 41 H 0.224 0.776 42 H 0.139 0.861 43 H 0.151 0.849 44 H 0.096 0.904 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -10.780 -12.287 18.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.085 0.915 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.102 0.898 15 N -0.363 5.363 16 C 0.336 3.664 17 O -0.399 6.399 18 C -0.123 4.123 19 C -0.079 4.079 20 C -0.153 4.153 21 C 0.049 3.951 22 N -0.116 5.116 23 C -0.125 4.125 24 N -0.129 5.129 25 N -0.129 5.129 26 C -0.124 4.124 27 C -0.153 4.153 28 C -0.053 4.053 29 C 0.039 3.961 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.036 0.964 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.225 0.775 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.240 0.760 41 H 0.240 0.760 42 H 0.157 0.843 43 H 0.169 0.831 44 H 0.114 0.886 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -8.640 -10.069 -13.296 18.783 hybrid contribution 1.118 0.561 0.956 1.574 sum -7.522 -9.508 -12.339 17.299 Atomic orbital electron populations 1.70012 1.05336 1.25581 1.53383 1.25037 0.95287 0.98531 1.00435 0.86288 0.79081 0.83558 0.77838 1.21230 1.21772 1.20395 1.19159 0.92777 0.84795 1.41878 0.91517 1.43962 1.35987 1.01657 1.49456 1.20965 0.97803 0.86842 0.92868 1.21998 0.96922 0.99412 0.98739 1.21682 0.99047 0.95900 0.98807 1.22057 0.86761 0.97105 0.92961 0.89771 1.46019 1.26420 1.30571 1.33287 1.18033 0.85403 0.82402 0.80609 1.90850 1.44950 1.33629 1.70463 1.20324 0.96512 0.97246 0.98246 1.21228 0.92165 0.96861 0.97683 1.20741 0.99676 0.99365 0.95547 1.17893 0.86559 0.97936 0.92750 1.44306 1.18388 1.23177 1.25733 1.26825 0.86451 0.97119 1.02149 1.74252 1.23253 1.09515 1.05854 1.74259 1.09263 1.06934 1.22425 1.26845 0.97092 0.99184 0.89304 1.20827 0.94247 0.98211 1.02029 1.21229 0.95684 0.97111 0.91262 1.21096 0.88819 0.98991 0.87209 0.93644 0.92573 0.96358 0.92061 0.92544 0.92221 0.93030 0.77472 0.84164 0.84391 0.76031 0.76006 0.84315 0.83099 0.88637 0.96452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 2 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 3 Si 0.90 22.08 29.59 -169.99 -5.03 17.05 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.26 -7.03 9.59 -15.06 -0.14 -7.17 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 9 N -0.59 -14.42 2.99 -172.32 -0.52 -14.94 16 10 C 0.14 2.81 6.52 -3.71 -0.02 2.78 16 11 C -0.13 -2.08 6.08 -26.61 -0.16 -2.24 16 12 C -0.12 -1.71 5.36 -26.69 -0.14 -1.85 16 13 C 0.12 2.10 2.60 -67.81 -0.18 1.92 16 14 H 0.08 1.75 7.58 -51.93 -0.39 1.36 16 15 N -0.71 -10.34 5.03 -54.68 -0.28 -10.61 16 16 C 0.55 8.66 7.73 -12.41 -0.10 8.57 16 17 O -0.52 -10.71 16.00 5.30 0.08 -10.62 16 18 C -0.12 -1.36 5.87 -104.95 -0.62 -1.98 16 19 C -0.06 -0.49 9.53 -39.22 -0.37 -0.86 16 20 C -0.13 -0.91 9.46 -39.47 -0.37 -1.28 16 21 C 0.14 1.10 6.65 -83.58 -0.56 0.55 16 22 N -0.43 -3.49 2.99 -63.16 -0.19 -3.68 16 23 C 0.16 1.32 12.06 -89.16 -1.08 0.24 16 24 N -0.29 -3.41 12.19 29.85 0.36 -3.04 16 25 N -0.29 -3.44 12.19 29.85 0.36 -3.07 16 26 C 0.16 1.37 12.06 -89.17 -1.08 0.29 16 27 C -0.13 -1.05 9.46 -39.47 -0.37 -1.42 16 28 C -0.03 -0.34 9.58 -39.22 -0.38 -0.72 16 29 C 0.17 3.86 4.89 -3.71 -0.02 3.84 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.06 1.10 7.93 -51.93 -0.41 0.68 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.39 4.16 6.63 -40.82 -0.27 3.89 16 38 H 0.14 0.82 6.39 -52.49 -0.34 0.48 16 39 H 0.14 0.54 6.84 -52.48 -0.36 0.18 16 40 H 0.22 0.87 7.17 -52.49 -0.38 0.49 16 41 H 0.22 0.98 7.17 -52.48 -0.38 0.61 16 42 H 0.14 0.72 6.84 -52.49 -0.36 0.36 16 43 H 0.15 1.62 7.64 -52.48 -0.40 1.22 16 44 H 0.10 2.64 6.04 -51.93 -0.31 2.33 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 371.15 15.07 5.59 5.59 Total: -1.00 -36.14 371.15 -10.33 -46.48 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.68 Total: 1.68 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: -5.67 Total: 0.76 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: 0.37 Total: -60.94 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.14 -10.33 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008854167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.390 kcal (2) G-P(sol) polarization free energy of solvation -36.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds