Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00053 * 2 1 4 4 H 1.48502 * 109.47117 * 270.00138 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99989 * 3 2 1 6 6 H 1.48492 * 109.47449 * 150.00129 * 3 2 1 7 7 C 1.38816 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99640 * 197.36201 * 7 2 1 9 9 N 1.36933 * 119.99919 * 17.35942 * 7 2 1 10 10 C 1.46930 * 120.63017 * 207.66422 * 9 7 2 11 11 C 1.53190 * 108.77781 * 233.63233 * 10 9 7 12 12 C 1.53042 * 109.33836 * 305.37999 * 11 10 9 13 13 C 1.53044 * 109.53646 * 61.31429 * 12 11 10 14 14 H 1.09002 * 109.49483 * 58.65347 * 13 12 11 15 15 N 1.46504 * 109.49342 * 178.71469 * 13 12 11 16 16 C 1.34781 * 119.99966 * 204.93783 * 15 13 12 17 17 O 1.21577 * 119.99698 * 359.97438 * 16 15 13 18 18 C 1.47671 * 120.00316 * 180.02562 * 16 15 13 19 19 C 1.39700 * 120.07474 * 359.95083 * 18 16 15 20 20 C 1.37735 * 119.91431 * 180.02562 * 19 18 16 21 21 C 1.39026 * 120.08382 * 359.97438 * 20 19 18 22 22 N 1.39924 * 119.92372 * 179.97438 * 21 20 19 23 23 C 1.36362 * 127.11432 * 359.68966 * 22 21 20 24 24 N 1.30502 * 107.19439 * 179.83201 * 23 22 21 25 25 N 1.28540 * 109.92061 * 0.43907 * 24 23 22 26 26 C 1.30502 * 109.91779 * 359.71800 * 25 24 23 27 27 C 1.39025 * 120.15917 * 0.02562 * 21 20 19 28 28 C 1.37731 * 120.08115 * 0.02562 * 27 21 20 29 29 C 1.46927 * 120.63387 * 27.68625 * 9 7 2 30 30 H 0.96999 * 120.00314 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.58722 * 353.41999 * 10 9 7 32 32 H 1.09000 * 109.58289 * 113.70117 * 10 9 7 33 33 H 1.08991 * 109.49861 * 65.31482 * 11 10 9 34 34 H 1.08999 * 109.49877 * 185.38404 * 11 10 9 35 35 H 1.09002 * 109.43278 * 301.31384 * 12 11 10 36 36 H 1.08993 * 109.49048 * 181.35189 * 12 11 10 37 37 H 0.97001 * 120.00361 * 24.93785 * 15 13 12 38 38 H 1.07998 * 120.04632 * 0.04879 * 19 18 16 39 39 H 1.08003 * 119.95967 * 180.25526 * 20 19 18 40 40 H 1.08002 * 126.39732 * 359.97376 * 23 22 21 41 41 H 1.08005 * 126.40052 * 180.02562 * 26 25 24 42 42 H 1.08002 * 119.96164 * 179.97438 * 27 21 20 43 43 H 1.08005 * 120.04194 * 180.02562 * 28 27 21 44 44 H 1.09005 * 109.58637 * 6.58230 * 29 9 7 45 45 H 1.09000 * 109.70793 * 246.22678 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3724 -2.3609 -0.3549 10 6 1.8196 -3.6549 0.1784 11 6 2.0752 -4.6090 -0.9925 12 6 0.8202 -4.6886 -1.8647 13 6 0.5015 -3.3028 -2.4306 14 1 1.3498 -2.9440 -3.0135 15 7 -0.6822 -3.3860 -3.2899 16 6 -0.8695 -2.4786 -4.2687 17 8 -0.0564 -1.5907 -4.4381 18 6 -2.0628 -2.5620 -5.1345 19 6 -2.9981 -3.5816 -4.9412 20 6 -4.1097 -3.6566 -5.7510 21 6 -4.3018 -2.7191 -6.7595 22 7 -5.4319 -2.7988 -7.5806 23 6 -6.4257 -3.7309 -7.5244 24 7 -7.2840 -3.4367 -8.4625 25 7 -6.8913 -2.3944 -9.1042 26 6 -5.7645 -1.9640 -8.6061 27 6 -3.3731 -1.7031 -6.9548 28 6 -2.2586 -1.6224 -6.1495 29 6 0.2280 -2.3339 -1.2760 30 1 -0.4850 0.8400 0.0004 31 1 2.7402 -3.5178 0.7458 32 1 1.0482 -4.0686 0.8280 33 1 2.9090 -4.2382 -1.5886 34 1 2.3152 -5.6004 -0.6082 35 1 -0.0188 -5.0365 -1.2620 36 1 0.9912 -5.3853 -2.6852 37 1 -1.3311 -4.0942 -3.1545 38 1 -2.8500 -4.3098 -4.1575 39 1 -4.8353 -4.4421 -5.5996 40 1 -6.4914 -4.5566 -6.8315 41 1 -5.2008 -1.1065 -8.9431 42 1 -3.5253 -0.9767 -7.7394 43 1 -1.5378 -0.8326 -6.3015 44 1 0.0984 -1.3252 -1.6683 45 1 -0.6756 -2.6397 -0.7486 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008854167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 80.830675 kcal Electronic energy + Delta-G solvation = -28682.181522 eV Core-core repulsion = 24701.067010 eV Total energy + Delta-G solvation = -3981.114512 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.31010 -41.41432 -39.97245 -38.81382 -36.02644 -35.85788 -34.47926 -32.63414 -31.99974 -31.57805 -31.43442 -29.97047 -27.24905 -25.98510 -24.79899 -24.04405 -23.79510 -22.90683 -22.16656 -21.47143 -20.96764 -19.84100 -18.83331 -18.68321 -17.33803 -17.26175 -16.89767 -16.79984 -16.18892 -16.00248 -15.94490 -15.62380 -15.29587 -15.24195 -15.06044 -14.77510 -14.57289 -14.21396 -14.15746 -13.98546 -13.97565 -13.45891 -12.94476 -12.70501 -12.67927 -12.52896 -12.30159 -12.28188 -12.22712 -12.04376 -11.69692 -11.61221 -11.58976 -11.26493 -10.98865 -10.62763 -10.57217 -10.24702 -10.17032 -9.66429 -8.69803 -7.90411 -5.35499 -0.67381 0.16199 0.84188 1.26911 1.40181 1.45157 1.50968 1.75265 1.83017 2.12199 2.48340 2.71866 3.25565 3.31190 3.47854 3.58923 3.60961 3.77294 3.81431 3.93071 4.01159 4.09397 4.15283 4.18686 4.27071 4.45365 4.49541 4.50812 4.62275 4.79737 4.83304 4.91540 4.92837 4.96832 5.10156 5.14399 5.21390 5.22656 5.26251 5.34153 5.39867 5.46446 5.53601 5.61835 5.78051 5.92230 6.35513 6.58358 7.11158 7.26660 7.53716 7.84840 8.32960 9.14049 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.002421 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.390176 B =11564.851440 C =12695.329905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.050 4.050 3 Si 0.960 3.040 4 H -0.294 1.294 5 H -0.292 1.292 6 H -0.263 1.263 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.134 3.866 11 C -0.122 4.122 12 C -0.107 4.107 13 C 0.131 3.869 14 H 0.051 0.949 15 N -0.700 5.700 16 C 0.545 3.455 17 O -0.584 6.584 18 C -0.144 4.144 19 C -0.050 4.050 20 C -0.122 4.122 21 C 0.147 3.853 22 N -0.432 5.432 23 C 0.174 3.826 24 N -0.337 5.337 25 N -0.336 5.336 26 C 0.168 3.832 27 C -0.128 4.128 28 C -0.048 4.048 29 C 0.177 3.823 30 H 0.247 0.753 31 H 0.053 0.947 32 H 0.023 0.977 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.414 0.586 38 H 0.167 0.833 39 H 0.178 0.822 40 H 0.264 0.736 41 H 0.255 0.745 42 H 0.163 0.837 43 H 0.133 0.867 44 H 0.043 0.957 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.582 -13.738 -12.654 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.246 4.246 3 Si 0.788 3.212 4 H -0.222 1.222 5 H -0.218 1.218 6 H -0.187 1.187 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.145 4.145 13 C 0.025 3.975 14 H 0.069 0.931 15 N -0.351 5.351 16 C 0.333 3.667 17 O -0.465 6.465 18 C -0.148 4.148 19 C -0.069 4.069 20 C -0.142 4.142 21 C 0.054 3.946 22 N -0.118 5.118 23 C -0.113 4.113 24 N -0.173 5.173 25 N -0.171 5.171 26 C -0.119 4.119 27 C -0.148 4.148 28 C -0.068 4.068 29 C 0.050 3.950 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.252 0.748 38 H 0.184 0.816 39 H 0.195 0.805 40 H 0.280 0.720 41 H 0.271 0.729 42 H 0.181 0.819 43 H 0.151 0.849 44 H 0.061 0.939 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -9.408 -13.099 -13.666 21.139 hybrid contribution 1.310 1.439 1.060 2.216 sum -8.097 -11.660 -12.606 18.985 Atomic orbital electron populations 1.70158 1.06568 1.25543 1.55240 1.25759 0.96070 1.01478 1.01311 0.85373 0.78583 0.80024 0.77195 1.22159 1.21835 1.18691 1.19491 0.93020 0.86256 1.40525 0.91483 1.44253 1.36024 1.02660 1.50446 1.21192 0.97551 0.85599 0.94706 1.21900 0.97116 1.00122 0.97020 1.21653 0.99131 0.93774 0.99902 1.21532 0.86928 0.98113 0.90954 0.93080 1.45779 1.25983 1.31054 1.32332 1.18787 0.85983 0.81194 0.80699 1.90813 1.47445 1.36032 1.72209 1.20056 0.96083 0.99839 0.98774 1.21444 0.91350 0.95892 0.98190 1.21127 0.99489 0.99553 0.94019 1.18023 0.86089 0.97855 0.92655 1.44375 1.18457 1.23270 1.25732 1.27606 0.85166 0.97205 1.01317 1.74169 1.25120 1.10408 1.07595 1.74180 1.11054 1.07931 1.23975 1.27487 0.96291 0.99466 0.88637 1.20968 0.93148 0.98799 1.01892 1.21168 0.96553 0.96969 0.92064 1.20813 0.88122 0.97640 0.88457 0.94430 0.92840 0.95880 0.93136 0.88382 0.90361 0.89348 0.74801 0.81568 0.80517 0.72028 0.72907 0.81909 0.84881 0.93850 0.97959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.76 11.19 21.65 0.24 -56.52 16 2 C -0.05 -2.93 4.91 84.86 0.42 -2.52 16 3 Si 0.96 47.03 29.59 68.60 2.03 49.06 16 4 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 5 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.26 -14.82 9.59 84.03 0.81 -14.01 16 8 H 0.07 3.68 7.89 -2.91 -0.02 3.66 16 9 N -0.61 -30.62 2.99 -699.09 -2.09 -32.72 16 10 C 0.13 5.22 6.52 86.36 0.56 5.78 16 11 C -0.12 -3.54 6.08 30.67 0.19 -3.36 16 12 C -0.11 -2.81 5.36 30.62 0.16 -2.65 16 13 C 0.13 4.74 2.60 45.07 0.12 4.86 16 14 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 15 N -0.70 -19.90 5.03 -445.18 -2.24 -22.14 16 16 C 0.54 17.69 7.73 86.73 0.67 18.36 16 17 O -0.58 -25.78 16.00 -3.96 -0.06 -25.84 16 18 C -0.14 -3.19 5.87 -20.08 -0.12 -3.31 16 19 C -0.05 -0.65 9.53 22.50 0.21 -0.43 16 20 C -0.12 -1.13 9.46 22.34 0.21 -0.92 16 21 C 0.15 1.79 6.65 38.23 0.25 2.05 16 22 N -0.43 -5.61 2.99 -353.75 -1.06 -6.67 16 23 C 0.17 2.27 12.06 179.84 2.17 4.44 16 24 N -0.34 -7.34 12.19 -59.46 -0.73 -8.07 16 25 N -0.34 -7.52 12.19 -59.46 -0.73 -8.24 16 26 C 0.17 2.47 12.06 179.84 2.17 4.64 16 27 C -0.13 -1.77 9.46 22.34 0.21 -1.55 16 28 C -0.05 -0.98 9.58 22.50 0.22 -0.77 16 29 C 0.18 8.53 4.89 86.36 0.42 8.95 16 30 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 32 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 7.73 6.63 -92.71 -0.61 7.11 16 38 H 0.17 1.20 6.39 -2.91 -0.02 1.18 16 39 H 0.18 0.27 6.84 -2.91 -0.02 0.25 16 40 H 0.26 0.72 7.17 -2.91 -0.02 0.70 16 41 H 0.26 1.56 7.17 -2.91 -0.02 1.54 16 42 H 0.16 1.32 6.84 -2.91 -0.02 1.30 16 43 H 0.13 3.13 7.64 -2.91 -0.02 3.11 16 44 H 0.04 2.55 6.04 -2.38 -0.01 2.53 16 45 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 Total: -1.00 -87.08 371.15 4.46 -82.62 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.42 Total: 8.96 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 8.67 Total: 19.56 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -6.60 Total: -134.36 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -87.08 4.46 -82.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008854167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.454 kcal (2) G-P(sol) polarization free energy of solvation -87.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds