Wall clock time and date at job start Sat Apr 11 2020 06:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00297 * 2 1 4 4 H 1.48497 * 109.47255 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47124 * 300.00908 * 3 2 1 6 6 H 1.48504 * 109.46664 * 60.00628 * 3 2 1 7 7 C 1.38812 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99747 * 197.35856 * 7 2 1 9 9 N 1.36935 * 120.00294 * 17.36497 * 7 2 1 10 10 C 1.46929 * 120.62790 * 207.68111 * 9 7 2 11 11 C 1.53193 * 108.77247 * 233.60004 * 10 9 7 12 12 C 1.53039 * 109.31575 * 305.36717 * 11 10 9 13 13 C 1.53042 * 109.53751 * 61.36310 * 12 11 10 14 14 H 1.09001 * 109.49950 * 58.62059 * 13 12 11 15 15 N 1.46503 * 109.49567 * 178.68424 * 13 12 11 16 16 C 1.34779 * 119.99833 * 204.93404 * 15 13 12 17 17 O 1.21612 * 119.99947 * 0.02562 * 16 15 13 18 18 C 1.47288 * 119.99937 * 180.02562 * 16 15 13 19 19 C 1.37959 * 126.80794 * 0.02589 * 18 16 15 20 20 N 1.34157 * 107.89022 * 179.97438 * 19 18 16 21 21 H 0.96997 * 125.17065 * 179.97438 * 20 19 18 22 22 N 1.39777 * 109.67246 * 0.22895 * 20 19 18 23 23 C 1.31370 * 109.07565 * 359.60441 * 22 20 19 24 24 C 1.48295 * 126.51127 * 180.13657 * 23 22 20 25 25 C 1.39805 * 120.54031 * 325.28696 * 24 23 22 26 26 C 1.38402 * 118.30945 * 179.97438 * 25 24 23 27 27 C 1.38322 * 119.28437 * 0.02562 * 26 25 24 28 28 N 1.31888 * 121.04025 * 0.02562 * 27 26 25 29 29 C 1.31737 * 121.85307 * 359.65980 * 28 27 26 30 30 C 1.46935 * 120.60662 * 27.69107 * 9 7 2 31 31 H 0.97002 * 119.99737 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.58543 * 113.81877 * 10 9 7 33 33 H 1.08995 * 109.70439 * 353.45706 * 10 9 7 34 34 H 1.08997 * 109.49867 * 185.40995 * 11 10 9 35 35 H 1.09005 * 109.52497 * 65.33163 * 11 10 9 36 36 H 1.08998 * 109.46078 * 301.34512 * 12 11 10 37 37 H 1.09002 * 109.46188 * 181.38151 * 12 11 10 38 38 H 0.97000 * 120.00352 * 24.94129 * 15 13 12 39 39 H 1.08006 * 126.06061 * 359.97438 * 19 18 16 40 40 H 1.07999 * 120.84698 * 0.02589 * 25 24 23 41 41 H 1.08001 * 120.36184 * 179.97438 * 26 25 24 42 42 H 1.08003 * 119.48016 * 180.02562 * 27 26 25 43 43 H 1.08010 * 119.70644 * 180.31321 * 29 28 27 44 44 H 1.09000 * 109.61060 * 6.63038 * 30 9 7 45 45 H 1.08998 * 109.56500 * 246.19782 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2123 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3550 10 6 1.8193 -3.6548 0.1786 11 6 2.0745 -4.6093 -0.9921 12 6 0.8190 -4.6886 -1.8635 13 6 0.5010 -3.3031 -2.4304 14 1 1.3494 -2.9451 -3.0136 15 7 -0.6828 -3.3862 -3.2895 16 6 -0.8697 -2.4792 -4.2688 17 8 -0.0555 -1.5922 -4.4395 18 6 -2.0601 -2.5624 -5.1322 19 6 -3.0669 -3.5031 -5.0635 20 7 -3.9594 -3.2225 -6.0249 21 1 -4.7687 -3.7274 -6.2006 22 7 -3.5432 -2.0951 -6.7389 23 6 -2.4103 -1.6617 -6.2345 24 6 -1.6307 -0.4878 -6.6964 25 6 -1.5871 -0.1530 -8.0530 26 6 -0.8458 0.9522 -8.4329 27 6 -0.1775 1.6831 -7.4672 28 7 -0.2363 1.3423 -6.1945 29 6 -0.9337 0.3025 -5.7847 30 6 0.2281 -2.3332 -1.2764 31 1 -0.4850 0.8401 0.0004 32 1 1.0469 -4.0694 0.8263 33 1 2.7394 -3.5198 0.7472 34 1 2.3139 -5.6007 -0.6077 35 1 2.9085 -4.2393 -1.5887 36 1 -0.0202 -5.0356 -1.2606 37 1 0.9896 -5.3861 -2.6836 38 1 -1.3321 -4.0939 -3.1535 39 1 -3.1261 -4.3208 -4.3603 40 1 -2.1191 -0.7414 -8.7859 41 1 -0.7889 1.2405 -9.4722 42 1 0.4016 2.5464 -7.7600 43 1 -0.9619 0.0577 -4.7331 44 1 0.0991 -1.3248 -1.6693 45 1 -0.6742 -2.6397 -0.7471 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008887999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:57 Heat of formation + Delta-G solvation = 72.353074 kcal Electronic energy + Delta-G solvation = -29797.415567 eV Core-core repulsion = 25815.933438 eV Total energy + Delta-G solvation = -3981.482129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29006 -40.77534 -40.46199 -38.74708 -35.78168 -34.55368 -34.32010 -32.90331 -32.11424 -31.63957 -31.09825 -29.80277 -27.20810 -25.23359 -24.78494 -24.43413 -23.86175 -22.93345 -21.43171 -21.18774 -20.66525 -19.42302 -18.70807 -18.02709 -17.46006 -17.13156 -17.06282 -16.56268 -16.50448 -16.05889 -15.73714 -15.45506 -15.23280 -14.97932 -14.91402 -14.72383 -14.50733 -14.13474 -14.06917 -13.99643 -13.71267 -13.44374 -12.94376 -12.84385 -12.66159 -12.44563 -12.20843 -12.14415 -12.02986 -11.65432 -11.53446 -11.45550 -11.21237 -10.84640 -10.59256 -10.53808 -10.41110 -10.09802 -9.87474 -9.51006 -8.65772 -7.87729 -5.32207 -0.21414 0.34763 0.54115 1.17205 1.39097 1.47060 1.52728 1.71088 2.27742 2.48521 2.50946 2.90308 3.18315 3.29807 3.56003 3.70443 3.80241 3.95030 3.99342 4.01711 4.11169 4.18314 4.19927 4.28535 4.39467 4.44781 4.54288 4.61164 4.69640 4.86705 4.88440 4.97391 4.99986 5.12629 5.19698 5.22602 5.24776 5.29856 5.40209 5.55563 5.57845 5.65425 5.76740 5.86045 6.19915 6.37370 6.39957 6.79144 7.07738 7.14968 7.48631 7.89005 8.36223 9.16352 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.004223 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.421348 B = 6628.394369 C = 8650.218670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.045 4.045 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.302 1.302 6 H -0.284 1.284 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.105 4.105 13 C 0.135 3.865 14 H 0.047 0.953 15 N -0.701 5.701 16 C 0.579 3.421 17 O -0.578 6.578 18 C -0.312 4.312 19 C 0.149 3.851 20 N -0.441 5.441 21 H 0.465 0.535 22 N -0.294 5.294 23 C 0.155 3.845 24 C -0.094 4.094 25 C -0.048 4.048 26 C -0.171 4.171 27 C 0.094 3.906 28 N -0.530 5.530 29 C 0.143 3.857 30 C 0.180 3.820 31 H 0.245 0.755 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.412 0.588 39 H 0.243 0.757 40 H 0.160 0.840 41 H 0.181 0.819 42 H 0.183 0.817 43 H 0.138 0.862 44 H 0.042 0.958 45 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.384 -13.191 -16.352 23.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.241 4.241 3 Si 0.781 3.219 4 H -0.188 1.188 5 H -0.229 1.229 6 H -0.211 1.211 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.334 5.334 10 C 0.011 3.989 11 C -0.162 4.162 12 C -0.143 4.143 13 C 0.029 3.971 14 H 0.065 0.935 15 N -0.353 5.353 16 C 0.368 3.632 17 O -0.459 6.459 18 C -0.327 4.327 19 C -0.003 4.003 20 N -0.149 5.149 21 H 0.314 0.686 22 N -0.116 5.116 23 C -0.014 4.014 24 C -0.098 4.098 25 C -0.075 4.075 26 C -0.190 4.190 27 C -0.063 4.063 28 N -0.239 5.239 29 C -0.014 4.014 30 C 0.053 3.947 31 H 0.055 0.945 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.066 0.934 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.249 0.751 39 H 0.259 0.741 40 H 0.177 0.823 41 H 0.198 0.802 42 H 0.200 0.800 43 H 0.155 0.845 44 H 0.060 0.940 45 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -9.357 -11.807 -16.695 22.488 hybrid contribution -0.076 0.303 0.495 0.585 sum -9.433 -11.505 -16.200 21.995 Atomic orbital electron populations 1.70152 1.06514 1.25327 1.55266 1.25660 0.95952 1.01159 1.01285 0.85426 0.79102 0.80791 0.76564 1.18753 1.22918 1.21103 1.19494 0.92960 0.86344 1.40505 0.91637 1.44258 1.36126 1.02568 1.50477 1.21171 0.97489 0.85599 0.94678 1.21905 0.97167 1.00054 0.97065 1.21633 0.99004 0.93859 0.99779 1.21439 0.86997 0.97862 0.90830 0.93512 1.45596 1.25954 1.31258 1.32471 1.17642 0.84791 0.81030 0.79705 1.90792 1.47286 1.35624 1.72214 1.21276 1.01581 1.04167 1.05716 1.23650 0.86892 0.97831 0.91916 1.45947 1.21801 1.22603 1.24516 0.68570 1.77234 1.13178 1.01730 1.19441 1.21592 0.92274 0.93994 0.93501 1.18811 1.00714 0.95038 0.95224 1.21921 0.95653 0.96141 0.93790 1.22435 0.98219 0.95645 1.02730 1.23521 0.95940 0.99243 0.87609 1.67753 1.18565 1.17124 1.20465 1.23058 0.89319 0.88555 1.00517 1.20801 0.87916 0.97646 0.88381 0.94546 0.95846 0.92948 0.88423 0.93385 0.90275 0.89507 0.75105 0.74058 0.82277 0.80181 0.80045 0.84491 0.93992 0.98028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.79 11.19 21.65 0.24 -58.55 16 2 C -0.04 -2.70 4.91 84.86 0.42 -2.28 16 3 Si 0.95 49.54 29.59 68.60 2.03 51.57 16 4 H -0.26 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -16.41 7.11 99.48 0.71 -15.70 16 6 H -0.28 -14.32 7.11 99.48 0.71 -13.62 16 7 C -0.26 -15.42 9.59 84.03 0.81 -14.61 16 8 H 0.07 3.75 7.89 -2.91 -0.02 3.73 16 9 N -0.61 -31.83 3.00 -699.08 -2.09 -33.92 16 10 C 0.14 5.48 6.51 86.36 0.56 6.04 16 11 C -0.12 -3.75 6.08 30.67 0.19 -3.57 16 12 C -0.10 -2.92 5.35 30.62 0.16 -2.76 16 13 C 0.14 5.16 2.60 45.07 0.12 5.28 16 14 H 0.05 2.15 7.58 -2.39 -0.02 2.13 16 15 N -0.70 -21.32 5.07 -445.56 -2.26 -23.58 16 16 C 0.58 20.87 7.65 86.62 0.66 21.53 16 17 O -0.58 -27.34 12.13 -4.07 -0.05 -27.39 16 18 C -0.31 -8.67 6.27 -18.78 -0.12 -8.79 16 19 C 0.15 2.20 11.50 84.27 0.97 3.17 16 20 N -0.44 -6.14 7.20 -56.42 -0.41 -6.55 16 21 H 0.46 2.19 8.96 -213.53 -1.91 0.27 16 22 N -0.29 -7.01 12.64 -44.52 -0.56 -7.57 16 23 C 0.15 4.63 6.96 44.07 0.31 4.94 16 24 C -0.09 -3.10 5.74 -19.96 -0.11 -3.21 16 25 C -0.05 -1.22 9.92 22.69 0.23 -0.99 16 26 C -0.17 -3.75 10.10 22.33 0.23 -3.52 16 27 C 0.09 2.63 11.17 84.70 0.95 3.58 16 28 N -0.53 -20.89 10.35 -194.91 -2.02 -22.91 16 29 C 0.14 5.84 8.96 84.97 0.76 6.60 16 30 C 0.18 9.01 4.89 86.36 0.42 9.43 16 31 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 34 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.41 8.09 7.56 -92.71 -0.70 7.39 16 39 H 0.24 0.75 7.48 -2.91 -0.02 0.73 16 40 H 0.16 3.09 8.06 -2.91 -0.02 3.06 16 41 H 0.18 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.18 3.76 8.06 -2.91 -0.02 3.74 16 43 H 0.14 6.63 5.68 -2.91 -0.02 6.62 16 44 H 0.04 2.57 6.04 -2.39 -0.01 2.55 16 45 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 Total: -1.00 -91.89 371.15 -0.14 -92.03 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -1.56 Total: 16.04 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.54 Total: 20.83 kcal Atomic # 7 Polarization: -145.99 SS G_CDS: -7.10 Total: -153.08 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.05 Total: -27.39 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.03 Total: 51.57 kcal Total: -91.89 -0.14 -92.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008887999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.382 kcal (2) G-P(sol) polarization free energy of solvation -91.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds