Wall clock time and date at job start Sat Apr 11 2020 06:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47238 * 239.99716 * 3 2 1 5 5 H 1.48497 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47156 * 120.00067 * 3 2 1 7 7 C 1.38813 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 197.35594 * 7 2 1 9 9 N 1.36934 * 120.00120 * 17.35144 * 7 2 1 10 10 C 1.46925 * 120.63113 * 27.68189 * 9 7 2 11 11 C 1.53191 * 108.77669 * 126.41460 * 10 9 7 12 12 C 1.53039 * 109.31515 * 54.63186 * 11 10 9 13 13 C 1.53036 * 109.53933 * 298.63811 * 12 11 10 14 14 H 1.09007 * 109.49914 * 301.38033 * 13 12 11 15 15 N 1.46502 * 109.49769 * 181.31601 * 13 12 11 16 16 C 1.34776 * 120.00170 * 154.99758 * 15 13 12 17 17 O 1.21623 * 119.99592 * 0.02562 * 16 15 13 18 18 C 1.47287 * 120.00151 * 179.97438 * 16 15 13 19 19 C 1.37959 * 126.80769 * 0.02562 * 18 16 15 20 20 N 1.34153 * 107.88511 * 180.24227 * 19 18 16 21 21 H 0.97003 * 125.16304 * 179.69940 * 20 19 18 22 22 N 1.39776 * 109.67529 * 359.57458 * 20 19 18 23 23 C 1.31363 * 109.07846 * 0.43617 * 22 20 19 24 24 C 1.48287 * 126.51166 * 179.76649 * 23 22 20 25 25 C 1.39804 * 120.54419 * 324.69420 * 24 23 22 26 26 C 1.38404 * 118.31297 * 179.78094 * 25 24 23 27 27 C 1.38320 * 119.28334 * 0.49785 * 26 25 24 28 28 N 1.31887 * 121.04095 * 359.74104 * 27 26 25 29 29 C 1.31742 * 121.85571 * 0.02562 * 28 27 26 30 30 C 1.46932 * 120.62789 * 207.70272 * 9 7 2 31 31 H 0.97000 * 119.99676 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58608 * 6.61865 * 10 9 7 33 33 H 1.09005 * 109.58618 * 246.19987 * 10 9 7 34 34 H 1.09004 * 109.49320 * 294.68305 * 11 10 9 35 35 H 1.08997 * 109.49487 * 174.58500 * 11 10 9 36 36 H 1.08995 * 109.45813 * 178.61549 * 12 11 10 37 37 H 1.09000 * 109.44921 * 58.64978 * 12 11 10 38 38 H 0.97000 * 119.99860 * 335.00026 * 15 13 12 39 39 H 1.07997 * 126.05902 * 359.97438 * 19 18 16 40 40 H 1.08009 * 120.84304 * 359.97438 * 25 24 23 41 41 H 1.08002 * 120.36021 * 180.21522 * 26 25 24 42 42 H 1.08007 * 119.47797 * 179.76331 * 27 26 25 43 43 H 1.07993 * 119.70490 * 179.97438 * 29 28 27 44 44 H 1.08999 * 109.58508 * 113.80098 * 30 9 7 45 45 H 1.08997 * 109.58821 * 353.37202 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2277 -2.3340 -1.2756 11 6 0.5004 -3.3038 -2.4297 12 6 0.8182 -4.6891 -1.8623 13 6 2.0739 -4.6097 -0.9912 14 1 2.9080 -4.2401 -1.5878 15 7 2.3953 -5.9422 -0.4740 16 6 3.6623 -6.2425 -0.1260 17 8 4.5387 -5.4071 -0.2409 18 6 3.9853 -7.5820 0.3944 19 6 3.1075 -8.6296 0.5821 20 7 3.8020 -9.6654 1.0766 21 1 3.4277 -10.5306 1.3055 22 7 5.1471 -9.3096 1.2095 23 6 5.3034 -8.0663 0.8153 24 6 6.5721 -7.2989 0.7986 25 6 7.5316 -7.4906 1.7971 26 6 8.7012 -6.7532 1.7339 27 6 8.8771 -5.8509 0.7004 28 7 7.9516 -5.6879 -0.2249 29 6 6.8248 -6.3702 -0.2092 30 6 1.8191 -3.6548 0.1793 31 1 -0.4850 0.8401 -0.0004 32 1 0.0984 -1.3255 -1.6684 33 1 -0.6745 -2.6405 -0.7462 34 1 1.3491 -2.9459 -3.0126 35 1 -0.3804 -3.3656 -3.0687 36 1 0.9886 -5.3869 -2.6822 37 1 -0.0209 -5.0355 -1.2591 38 1 1.6962 -6.6084 -0.3821 39 1 2.0482 -8.6167 0.3725 40 1 7.3659 -8.1986 2.5958 41 1 9.4662 -6.8775 2.4861 42 1 9.7869 -5.2710 0.6502 43 1 6.0904 -6.2087 -0.9844 44 1 1.0467 -4.0690 0.8273 45 1 2.7398 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008888000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:01 Heat of formation + Delta-G solvation = 99.289850 kcal Electronic energy + Delta-G solvation = -29295.310712 eV Core-core repulsion = 25314.996650 eV Total energy + Delta-G solvation = -3980.314062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.46635 -39.79985 -39.25412 -37.22334 -34.36372 -33.51956 -32.47838 -31.96732 -30.77146 -30.41117 -30.16874 -28.29223 -25.24769 -24.28878 -23.77865 -23.32990 -22.08140 -21.68927 -20.49939 -19.90007 -19.45945 -18.47036 -17.09688 -16.71117 -16.44349 -16.14265 -15.70832 -15.45784 -15.15301 -14.69974 -14.48533 -14.06670 -13.95182 -13.84443 -13.72056 -13.41577 -13.11132 -13.04163 -12.86569 -12.38118 -12.34644 -11.92865 -11.82024 -11.28158 -11.03657 -10.84783 -10.74079 -10.58117 -10.23917 -10.21763 -9.96569 -9.86712 -9.71680 -9.61170 -9.50697 -9.41081 -9.14397 -8.75416 -8.60123 -8.34755 -6.63395 -5.74292 -3.15938 0.74736 1.26801 1.32244 2.12408 2.34150 3.36489 3.45601 3.49479 3.50731 3.53830 3.88450 4.01634 4.29700 4.56901 4.62497 4.76625 4.87290 4.94876 5.02973 5.14282 5.22228 5.33587 5.41946 5.46840 5.56577 5.65450 5.73522 5.83449 5.90301 6.10273 6.12062 6.17033 6.21011 6.26263 6.54742 6.63688 6.67640 6.72212 6.74486 6.76026 6.87531 7.03336 7.15256 7.38781 7.67509 7.78334 7.88018 8.06668 8.47085 8.53156 9.26755 9.89083 10.44336 11.34488 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003231 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.753945 B = 8664.856670 C =10462.580536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.587 5.587 10 C 0.167 3.833 11 C -0.140 4.140 12 C -0.114 4.114 13 C 0.128 3.872 14 H 0.089 0.911 15 N -0.718 5.718 16 C 0.586 3.414 17 O -0.528 6.528 18 C -0.273 4.273 19 C 0.107 3.893 20 N -0.464 5.464 21 H 0.444 0.556 22 N -0.284 5.284 23 C 0.177 3.823 24 C -0.086 4.086 25 C -0.045 4.045 26 C -0.190 4.190 27 C 0.110 3.890 28 N -0.487 5.487 29 C 0.170 3.830 30 C 0.143 3.857 31 H 0.253 0.747 32 H 0.089 0.911 33 H 0.018 0.982 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.058 0.942 38 H 0.390 0.610 39 H 0.190 0.810 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.177 0.823 44 H 0.015 0.985 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.671 -22.111 0.616 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.042 3.958 11 C -0.180 4.180 12 C -0.152 4.152 13 C 0.023 3.977 14 H 0.107 0.893 15 N -0.367 5.367 16 C 0.373 3.627 17 O -0.406 6.406 18 C -0.288 4.288 19 C -0.043 4.043 20 N -0.170 5.170 21 H 0.288 0.712 22 N -0.105 5.105 23 C 0.008 3.992 24 C -0.090 4.090 25 C -0.072 4.072 26 C -0.210 4.210 27 C -0.047 4.047 28 N -0.195 5.195 29 C 0.012 3.988 30 C 0.015 3.985 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.223 0.777 39 H 0.207 0.793 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.194 0.806 44 H 0.033 0.967 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.878 -21.756 0.340 23.141 hybrid contribution -0.978 0.018 0.781 1.252 sum 6.900 -21.738 1.120 22.834 Atomic orbital electron populations 1.70030 1.05238 1.25548 1.54192 1.25001 0.95272 0.98359 1.00937 0.86363 0.78910 0.83199 0.78312 1.20906 1.21692 1.20862 1.19200 0.92832 0.84718 1.41164 0.91557 1.43993 1.35582 1.01064 1.50357 1.20841 0.88547 0.98591 0.87870 1.22181 1.00444 0.95196 1.00139 1.21673 0.96722 0.98608 0.98229 1.21759 0.97861 0.80991 0.97128 0.89290 1.45975 1.08624 1.15847 1.66277 1.17131 0.82831 0.85465 0.77289 1.90789 1.46151 1.49239 1.54430 1.21449 0.92710 0.96568 1.18073 1.23043 0.98548 0.87509 0.95202 1.45919 1.05964 1.14059 1.51024 0.71160 1.77331 0.94229 1.14142 1.24795 1.21578 0.92232 0.90203 0.95188 1.18691 0.91792 0.99564 0.98935 1.21580 0.92168 0.96815 0.96678 1.21996 0.98663 0.99335 1.00993 1.22949 0.97612 0.94503 0.89672 1.67871 1.01969 1.23478 1.26174 1.23514 0.92391 0.86702 0.96190 1.21182 0.97909 0.86781 0.92609 0.93670 0.89268 0.96405 0.92343 0.92782 0.93096 0.92372 0.77707 0.79343 0.84846 0.84701 0.82789 0.80637 0.96676 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.41 11.19 55.49 0.62 -25.79 16 2 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 3 Si 0.90 22.32 29.59 -169.99 -5.03 17.29 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 7 C -0.25 -7.08 9.58 -15.06 -0.14 -7.22 16 8 H 0.07 1.90 7.89 -52.48 -0.41 1.49 16 9 N -0.59 -14.91 2.99 -172.31 -0.52 -15.42 16 10 C 0.17 3.92 5.31 -3.71 -0.02 3.90 16 11 C -0.14 -2.55 6.08 -26.61 -0.16 -2.71 16 12 C -0.11 -1.75 5.35 -26.69 -0.14 -1.89 16 13 C 0.13 2.20 2.60 -67.81 -0.18 2.03 16 14 H 0.09 1.78 7.58 -51.92 -0.39 1.38 16 15 N -0.72 -9.56 5.07 -54.80 -0.28 -9.84 16 16 C 0.59 8.73 7.65 -12.58 -0.10 8.63 16 17 O -0.53 -9.94 12.12 5.26 0.06 -9.88 16 18 C -0.27 -3.29 6.27 -102.95 -0.65 -3.94 16 19 C 0.11 0.81 11.50 -16.64 -0.19 0.61 16 20 N -0.46 -3.41 7.20 30.81 0.22 -3.18 16 21 H 0.44 1.51 8.96 -182.84 -1.64 -0.13 16 22 N -0.28 -3.21 12.64 34.57 0.44 -2.77 16 23 C 0.18 2.31 6.96 -80.56 -0.56 1.75 16 24 C -0.09 -1.19 5.75 -104.77 -0.60 -1.79 16 25 C -0.05 -0.53 9.92 -38.93 -0.39 -0.92 16 26 C -0.19 -2.00 10.10 -39.49 -0.40 -2.40 16 27 C 0.11 1.33 11.17 -17.50 -0.20 1.13 16 28 N -0.49 -7.55 10.35 -12.96 -0.13 -7.68 16 29 C 0.17 2.65 8.97 -17.18 -0.15 2.50 16 30 C 0.14 3.08 6.09 -3.70 -0.02 3.06 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.39 3.69 7.56 -40.82 -0.31 3.38 16 39 H 0.19 0.58 7.48 -52.49 -0.39 0.19 16 40 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 41 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 42 H 0.15 1.39 8.06 -52.48 -0.42 0.96 16 43 H 0.18 2.91 5.65 -52.49 -0.30 2.61 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.06 1.38 7.93 -51.93 -0.41 0.97 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -35.83 371.11 -10.11 -45.95 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.11 Total: 3.02 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: -3.98 Total: 2.72 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 0.35 Total: -64.69 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.83 -10.11 -45.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008888000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.238 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds