Wall clock time and date at job start Sat Apr 11 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 120.00200 * 2 1 4 4 H 1.48507 * 109.47238 * 239.99716 * 3 2 1 5 5 H 1.48497 * 109.47190 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47156 * 120.00067 * 3 2 1 7 7 C 1.38813 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99823 * 197.35594 * 7 2 1 9 9 N 1.36934 * 120.00120 * 17.35144 * 7 2 1 10 10 C 1.46925 * 120.63113 * 27.68189 * 9 7 2 11 11 C 1.53191 * 108.77669 * 126.41460 * 10 9 7 12 12 C 1.53039 * 109.31515 * 54.63186 * 11 10 9 13 13 C 1.53036 * 109.53933 * 298.63811 * 12 11 10 14 14 H 1.09007 * 109.49914 * 301.38033 * 13 12 11 15 15 N 1.46502 * 109.49769 * 181.31601 * 13 12 11 16 16 C 1.34776 * 120.00170 * 154.99758 * 15 13 12 17 17 O 1.21623 * 119.99592 * 0.02562 * 16 15 13 18 18 C 1.47287 * 120.00151 * 179.97438 * 16 15 13 19 19 C 1.37959 * 126.80769 * 0.02562 * 18 16 15 20 20 N 1.34153 * 107.88511 * 180.24227 * 19 18 16 21 21 H 0.97003 * 125.16304 * 179.69940 * 20 19 18 22 22 N 1.39776 * 109.67529 * 359.57458 * 20 19 18 23 23 C 1.31363 * 109.07846 * 0.43617 * 22 20 19 24 24 C 1.48287 * 126.51166 * 179.76649 * 23 22 20 25 25 C 1.39804 * 120.54419 * 324.69420 * 24 23 22 26 26 C 1.38404 * 118.31297 * 179.78094 * 25 24 23 27 27 C 1.38320 * 119.28334 * 0.49785 * 26 25 24 28 28 N 1.31887 * 121.04095 * 359.74104 * 27 26 25 29 29 C 1.31742 * 121.85571 * 0.02562 * 28 27 26 30 30 C 1.46932 * 120.62789 * 207.70272 * 9 7 2 31 31 H 0.97000 * 119.99676 * 0.02562 * 1 2 3 32 32 H 1.08999 * 109.58608 * 6.61865 * 10 9 7 33 33 H 1.09005 * 109.58618 * 246.19987 * 10 9 7 34 34 H 1.09004 * 109.49320 * 294.68305 * 11 10 9 35 35 H 1.08997 * 109.49487 * 174.58500 * 11 10 9 36 36 H 1.08995 * 109.45813 * 178.61549 * 12 11 10 37 37 H 1.09000 * 109.44921 * 58.64978 * 12 11 10 38 38 H 0.97000 * 119.99860 * 335.00026 * 15 13 12 39 39 H 1.07997 * 126.05902 * 359.97438 * 19 18 16 40 40 H 1.08009 * 120.84304 * 359.97438 * 25 24 23 41 41 H 1.08002 * 120.36021 * 180.21522 * 26 25 24 42 42 H 1.08007 * 119.47797 * 179.76331 * 27 26 25 43 43 H 1.07993 * 119.70490 * 179.97438 * 29 28 27 44 44 H 1.08999 * 109.58508 * 113.80098 * 30 9 7 45 45 H 1.08997 * 109.58821 * 353.37202 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0533 -1.2236 0.2785 9 7 1.3723 -2.3609 -0.3547 10 6 0.2277 -2.3340 -1.2756 11 6 0.5004 -3.3038 -2.4297 12 6 0.8182 -4.6891 -1.8623 13 6 2.0739 -4.6097 -0.9912 14 1 2.9080 -4.2401 -1.5878 15 7 2.3953 -5.9422 -0.4740 16 6 3.6623 -6.2425 -0.1260 17 8 4.5387 -5.4071 -0.2409 18 6 3.9853 -7.5820 0.3944 19 6 3.1075 -8.6296 0.5821 20 7 3.8020 -9.6654 1.0766 21 1 3.4277 -10.5306 1.3055 22 7 5.1471 -9.3096 1.2095 23 6 5.3034 -8.0663 0.8153 24 6 6.5721 -7.2989 0.7986 25 6 7.5316 -7.4906 1.7971 26 6 8.7012 -6.7532 1.7339 27 6 8.8771 -5.8509 0.7004 28 7 7.9516 -5.6879 -0.2249 29 6 6.8248 -6.3702 -0.2092 30 6 1.8191 -3.6548 0.1793 31 1 -0.4850 0.8401 -0.0004 32 1 0.0984 -1.3255 -1.6684 33 1 -0.6745 -2.6405 -0.7462 34 1 1.3491 -2.9459 -3.0126 35 1 -0.3804 -3.3656 -3.0687 36 1 0.9886 -5.3869 -2.6822 37 1 -0.0209 -5.0355 -1.2591 38 1 1.6962 -6.6084 -0.3821 39 1 2.0482 -8.6167 0.3725 40 1 7.3659 -8.1986 2.5958 41 1 9.4662 -6.8775 2.4861 42 1 9.7869 -5.2710 0.6502 43 1 6.0904 -6.2087 -0.9844 44 1 1.0467 -4.0690 0.8273 45 1 2.7398 -3.5177 0.7463 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008888000.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:00 Heat of formation + Delta-G solvation = 72.671816 kcal Electronic energy + Delta-G solvation = -29296.464957 eV Core-core repulsion = 25314.996650 eV Total energy + Delta-G solvation = -3981.468307 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28782 -40.74554 -40.50328 -38.78045 -35.90905 -34.47797 -34.11453 -32.88895 -32.30756 -31.79846 -31.07569 -29.68503 -27.23345 -25.22163 -24.77391 -24.42763 -23.82876 -23.01178 -21.43588 -21.20761 -20.69446 -19.41378 -18.69200 -18.01950 -17.45836 -17.10827 -17.03753 -16.57241 -16.48841 -16.12022 -15.77016 -15.53959 -15.12374 -15.10533 -14.86221 -14.69420 -14.58293 -14.20178 -14.02814 -13.93799 -13.76511 -13.37416 -13.01759 -12.83381 -12.73260 -12.50899 -12.13452 -12.10933 -11.94411 -11.71213 -11.52405 -11.43891 -11.26063 -10.88255 -10.61501 -10.57837 -10.40641 -10.12138 -9.85525 -9.51359 -8.66825 -7.89809 -5.34376 -0.19551 0.36660 0.54292 1.18777 1.44103 1.46151 1.53888 1.71392 2.23429 2.44931 2.52240 2.91918 3.20168 3.24133 3.56813 3.71654 3.76511 3.92557 3.96976 4.03191 4.12861 4.17961 4.18807 4.29020 4.39118 4.42825 4.53359 4.61933 4.64721 4.87146 4.89678 4.96406 5.02028 5.07535 5.17006 5.21079 5.22963 5.27519 5.33348 5.52047 5.63478 5.65330 5.78007 5.80173 6.21119 6.37826 6.39186 6.76003 7.07454 7.14489 7.44040 7.85127 8.33685 9.15368 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011483 B = 0.003231 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.753945 B = 8664.856670 C =10462.580536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.041 4.041 3 Si 0.961 3.039 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.280 1.280 7 C -0.268 4.268 8 H 0.049 0.951 9 N -0.607 5.607 10 C 0.171 3.829 11 C -0.131 4.131 12 C -0.102 4.102 13 C 0.146 3.854 14 H 0.056 0.944 15 N -0.701 5.701 16 C 0.584 3.416 17 O -0.577 6.577 18 C -0.312 4.312 19 C 0.150 3.850 20 N -0.442 5.442 21 H 0.464 0.536 22 N -0.298 5.298 23 C 0.158 3.842 24 C -0.098 4.098 25 C -0.052 4.052 26 C -0.176 4.176 27 C 0.095 3.905 28 N -0.524 5.524 29 C 0.146 3.854 30 C 0.146 3.854 31 H 0.252 0.748 32 H 0.052 0.948 33 H 0.007 0.993 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.414 0.586 39 H 0.244 0.756 40 H 0.153 0.847 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.154 0.846 44 H 0.022 0.978 45 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.838 -25.190 1.058 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.237 4.237 3 Si 0.789 3.211 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.206 1.206 7 C -0.398 4.398 8 H 0.067 0.933 9 N -0.331 5.331 10 C 0.046 3.954 11 C -0.170 4.170 12 C -0.140 4.140 13 C 0.039 3.961 14 H 0.074 0.926 15 N -0.352 5.352 16 C 0.373 3.627 17 O -0.458 6.458 18 C -0.328 4.328 19 C -0.002 4.002 20 N -0.150 5.150 21 H 0.314 0.686 22 N -0.119 5.119 23 C -0.011 4.011 24 C -0.102 4.102 25 C -0.079 4.079 26 C -0.195 4.195 27 C -0.062 4.062 28 N -0.233 5.233 29 C -0.012 4.012 30 C 0.019 3.981 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.025 0.975 34 H 0.063 0.937 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.252 0.748 39 H 0.260 0.740 40 H 0.171 0.829 41 H 0.193 0.807 42 H 0.199 0.801 43 H 0.171 0.829 44 H 0.040 0.960 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.023 -24.933 0.790 25.915 hybrid contribution -0.702 0.879 0.727 1.340 sum 6.321 -24.053 1.517 24.916 Atomic orbital electron populations 1.70150 1.06249 1.26018 1.54928 1.25650 0.96086 1.00996 1.00975 0.85443 0.77808 0.79640 0.78195 1.20650 1.21014 1.20631 1.19337 0.92483 0.86590 1.41431 0.93316 1.44216 1.36033 1.01523 1.51360 1.20726 0.87506 0.98171 0.88986 1.22021 1.01271 0.95542 0.98199 1.21600 0.95863 0.97431 0.99133 1.21189 0.97933 0.81892 0.95038 0.92619 1.45608 1.09055 1.14696 1.65886 1.17585 0.82481 0.86261 0.76403 1.90787 1.47646 1.51087 1.56295 1.21230 0.93696 0.96486 1.21346 1.23691 0.99893 0.85328 0.91293 1.45980 1.04747 1.14949 1.49302 0.68644 1.77262 0.96415 1.13239 1.25022 1.21592 0.92380 0.90903 0.96240 1.18860 0.93035 0.99386 0.98903 1.21910 0.92145 0.97302 0.96559 1.22410 0.98884 0.97461 1.00738 1.23487 0.97832 0.95322 0.89555 1.67767 1.02841 1.24519 1.28179 1.23217 0.92567 0.88423 0.97010 1.21217 0.96173 0.86449 0.94230 0.93849 0.92915 0.97532 0.93702 0.89682 0.89245 0.90201 0.74844 0.74034 0.82894 0.80749 0.80064 0.82931 0.95986 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 2 C -0.04 -2.39 4.91 84.86 0.42 -1.98 16 3 Si 0.96 47.19 29.59 68.60 2.03 49.22 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 7 C -0.27 -15.92 9.58 84.03 0.81 -15.11 16 8 H 0.05 2.99 7.89 -2.91 -0.02 2.96 16 9 N -0.61 -31.99 2.99 -699.07 -2.09 -34.09 16 10 C 0.17 8.16 5.31 86.36 0.46 8.62 16 11 C -0.13 -4.61 6.08 30.67 0.19 -4.42 16 12 C -0.10 -2.84 5.35 30.62 0.16 -2.68 16 13 C 0.15 5.00 2.60 45.07 0.12 5.12 16 14 H 0.06 2.31 7.58 -2.38 -0.02 2.30 16 15 N -0.70 -17.63 5.07 -445.55 -2.26 -19.88 16 16 C 0.58 17.55 7.65 86.62 0.66 18.21 16 17 O -0.58 -23.34 12.12 -4.11 -0.05 -23.39 16 18 C -0.31 -7.17 6.27 -18.78 -0.12 -7.28 16 19 C 0.15 1.64 11.50 84.27 0.97 2.60 16 20 N -0.44 -4.81 7.20 -56.43 -0.41 -5.21 16 21 H 0.46 1.02 8.96 -213.53 -1.91 -0.89 16 22 N -0.30 -6.16 12.64 -44.53 -0.56 -6.72 16 23 C 0.16 4.06 6.96 44.07 0.31 4.36 16 24 C -0.10 -2.82 5.75 -19.96 -0.11 -2.93 16 25 C -0.05 -1.21 9.92 22.69 0.23 -0.98 16 26 C -0.18 -3.49 10.10 22.33 0.23 -3.26 16 27 C 0.09 2.31 11.17 84.70 0.95 3.25 16 28 N -0.52 -17.36 10.35 -194.92 -2.02 -19.37 16 29 C 0.15 4.92 8.97 84.97 0.76 5.68 16 30 C 0.15 6.50 6.09 86.36 0.53 7.03 16 31 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 32 H 0.05 2.88 6.04 -2.39 -0.01 2.86 16 33 H 0.01 0.32 8.14 -2.38 -0.02 0.30 16 34 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.41 6.19 7.56 -92.71 -0.70 5.49 16 39 H 0.24 -0.14 7.48 -2.91 -0.02 -0.17 16 40 H 0.15 2.82 8.06 -2.91 -0.02 2.79 16 41 H 0.18 1.99 8.06 -2.91 -0.02 1.96 16 42 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.15 5.69 5.65 -2.91 -0.02 5.68 16 44 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.02 1.22 7.93 -2.39 -0.02 1.21 16 Total: -1.00 -86.70 371.11 -0.14 -86.84 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -1.56 Total: 11.73 kcal Atomic # 6 Polarization: 9.70 SS G_CDS: 6.54 Total: 16.24 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -7.10 Total: -140.64 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -0.05 Total: -23.39 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -86.70 -0.14 -86.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008888000.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.512 kcal (2) G-P(sol) polarization free energy of solvation -86.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds