Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47098 * 270.00035 * 3 2 1 5 5 H 1.48499 * 109.47211 * 30.00574 * 3 2 1 6 6 H 1.48504 * 109.46977 * 150.00666 * 3 2 1 7 7 C 1.38814 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99957 * 163.07652 * 7 2 1 9 9 N 1.36940 * 120.00124 * 343.07818 * 7 2 1 10 10 C 1.46928 * 120.63187 * 151.81453 * 9 7 2 11 11 C 1.53192 * 108.77751 * 126.40804 * 10 9 7 12 12 C 1.53040 * 109.30874 * 54.63547 * 11 10 9 13 13 C 1.53035 * 109.53925 * 298.63281 * 12 11 10 14 14 H 1.09000 * 109.52165 * 301.39629 * 13 12 11 15 15 N 1.46504 * 109.49570 * 181.32193 * 13 12 11 16 16 C 1.34773 * 119.99952 * 155.16195 * 15 13 12 17 17 O 1.21566 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.47759 * 120.00412 * 179.97438 * 16 15 13 19 19 C 1.40593 * 126.05201 * 179.97438 * 18 16 15 20 20 N 1.31248 * 106.63146 * 179.97438 * 19 18 16 21 21 N 1.40106 * 107.17282 * 359.97438 * 20 19 18 22 22 C 1.40139 * 125.56807 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.07424 * 179.69965 * 22 21 20 24 24 C 1.38113 * 119.93335 * 179.77083 * 23 22 21 25 25 C 1.38279 * 120.06624 * 0.48977 * 24 23 22 26 26 C 1.38279 * 120.14019 * 359.79162 * 25 24 23 27 27 C 1.38113 * 120.06826 * 359.94869 * 26 25 24 28 28 N 1.28709 * 108.86559 * 359.77004 * 21 20 19 29 29 C 1.46925 * 120.63069 * 331.82823 * 9 7 2 30 30 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58548 * 246.20439 * 10 9 7 32 32 H 1.09004 * 109.58372 * 6.47949 * 10 9 7 33 33 H 1.08997 * 109.49334 * 174.58473 * 11 10 9 34 34 H 1.08995 * 109.49879 * 294.68222 * 11 10 9 35 35 H 1.09002 * 109.45550 * 178.61232 * 12 11 10 36 36 H 1.09000 * 109.45902 * 58.65497 * 12 11 10 37 37 H 0.96990 * 120.00000 * 335.15498 * 15 13 12 38 38 H 1.08002 * 126.68373 * 359.96912 * 19 18 16 39 39 H 1.08009 * 120.02968 * 0.02882 * 23 22 21 40 40 H 1.07997 * 119.96703 * 180.25605 * 24 23 22 41 41 H 1.07998 * 119.93009 * 179.76392 * 25 24 23 42 42 H 1.08003 * 119.96823 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.03496 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.58642 * 113.80356 * 29 9 7 45 45 H 1.08996 * 109.58683 * 353.37988 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 1.8134 -3.6528 -0.2012 11 6 2.0671 -4.6183 0.9608 12 6 0.8118 -4.7024 1.8321 13 6 0.4975 -3.3213 2.4115 14 1 1.3470 -2.9701 2.9973 15 7 -0.6859 -3.4092 3.2707 16 6 -0.8710 -2.5095 4.2569 17 8 -0.0558 -1.6253 4.4339 18 6 -2.0648 -2.5978 5.1231 19 6 -2.3831 -1.7321 6.1842 20 7 -3.5179 -2.1571 6.6883 21 7 -3.9054 -3.2804 5.9460 22 6 -5.0648 -4.0381 6.1593 23 6 -5.3414 -5.1304 5.3478 24 6 -6.4825 -5.8779 5.5637 25 6 -7.3543 -5.5336 6.5803 26 6 -7.0847 -4.4430 7.3865 27 6 -5.9426 -3.6946 7.1791 28 7 -3.0249 -3.5002 5.0334 29 6 0.2261 -2.3410 1.2661 30 1 -0.4849 0.8400 0.0004 31 1 1.0397 -4.0597 -0.8523 32 1 2.7328 -3.5125 -0.7698 33 1 2.3037 -5.6068 0.5673 34 1 2.9022 -4.2552 1.5598 35 1 0.9812 -5.4076 2.6458 36 1 -0.0285 -5.0419 1.2265 37 1 -1.3362 -4.1149 3.1296 38 1 -1.8060 -0.8829 6.5193 39 1 -4.6627 -5.3975 4.5512 40 1 -6.6960 -6.7300 4.9354 41 1 -8.2478 -6.1175 6.7447 42 1 -7.7678 -4.1763 8.1794 43 1 -5.7323 -2.8432 7.8093 44 1 -0.6771 -2.6410 0.7348 45 1 0.0994 -1.3357 1.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009466113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 128.101532 kcal Electronic energy + Delta-G solvation = -28821.117030 eV Core-core repulsion = 24842.052335 eV Total energy + Delta-G solvation = -3979.064694 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.81726 -39.64566 -39.18428 -37.24988 -34.21711 -34.07130 -32.85684 -32.40829 -31.35374 -30.14209 -29.86853 -28.63285 -25.25201 -25.10216 -23.89918 -22.72580 -22.13609 -21.62181 -21.46722 -20.01298 -19.37414 -18.61532 -17.23056 -16.76547 -16.61498 -16.52609 -15.55813 -15.50392 -15.00618 -14.81221 -14.36137 -14.26869 -14.03551 -13.90628 -13.79498 -13.46786 -13.23433 -12.96718 -12.44918 -12.39201 -12.28513 -12.00721 -11.80558 -11.74751 -11.14601 -11.00926 -10.96485 -10.79235 -10.68119 -10.48074 -10.39041 -10.23825 -10.08783 -9.92033 -9.67011 -9.50188 -9.48000 -8.67300 -8.50879 -8.41006 -6.63038 -5.73253 -3.16878 0.24971 0.87193 1.54388 1.69531 1.79155 3.28985 3.31912 3.44149 3.51128 3.51529 3.54173 3.61711 4.42994 4.45526 4.56068 4.64590 4.70287 4.87403 4.92737 5.02292 5.24575 5.36843 5.41404 5.43298 5.52337 5.56054 5.64154 5.70291 5.71492 5.86992 5.95643 6.03473 6.08462 6.16118 6.19574 6.34130 6.43479 6.48688 6.61786 6.70433 6.77669 6.88922 6.97953 7.29411 7.55206 7.73932 7.84452 7.90662 8.47586 8.52174 9.25120 9.89138 10.44158 11.34775 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002595 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.051411 B =10785.492492 C =11698.483560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.256 4.256 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.116 3.884 14 H 0.086 0.914 15 N -0.702 5.702 16 C 0.600 3.400 17 O -0.517 6.517 18 C -0.039 4.039 19 C 0.081 3.919 20 N -0.281 5.281 21 N -0.167 5.167 22 C 0.159 3.841 23 C -0.112 4.112 24 C -0.099 4.099 25 C -0.120 4.120 26 C -0.101 4.101 27 C -0.109 4.109 28 N -0.205 5.205 29 C 0.167 3.833 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.398 0.602 38 H 0.220 0.780 39 H 0.142 0.858 40 H 0.136 0.864 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.141 0.859 44 H 0.018 0.982 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.364 -13.567 14.049 23.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.015 3.985 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.011 3.989 14 H 0.104 0.896 15 N -0.352 5.352 16 C 0.382 3.618 17 O -0.390 6.390 18 C -0.207 4.207 19 C -0.110 4.110 20 N -0.109 5.109 21 N -0.059 5.059 22 C 0.068 3.932 23 C -0.133 4.133 24 C -0.117 4.117 25 C -0.138 4.138 26 C -0.119 4.119 27 C -0.130 4.130 28 N -0.049 5.049 29 C 0.039 3.961 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.232 0.768 38 H 0.236 0.764 39 H 0.160 0.840 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.159 0.841 44 H 0.036 0.964 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.928 -13.408 14.385 24.097 hybrid contribution 0.741 1.076 -0.217 1.324 sum -13.187 -12.331 14.168 22.950 Atomic orbital electron populations 1.70014 1.05344 1.25560 1.53346 1.25051 0.95271 0.98513 1.00464 0.86303 0.79325 0.83682 0.77496 1.21477 1.21500 1.20367 1.19126 0.92555 0.84709 1.42177 0.91615 1.43960 1.36065 1.01818 1.49236 1.20965 0.97774 0.86871 0.92850 1.21999 0.96923 0.99360 0.98744 1.21675 0.99022 0.95898 0.98822 1.22085 0.86634 0.97243 0.92901 0.89633 1.45925 1.26346 1.30813 1.32124 1.16627 0.82923 0.82482 0.79794 1.90871 1.43556 1.33967 1.70622 1.23270 0.98247 0.96865 1.02326 1.25199 0.92756 0.99814 0.93206 1.78007 1.14536 0.99871 1.18442 1.48257 1.16559 1.20587 1.20468 1.17409 0.84144 0.92804 0.98821 1.21019 0.98858 0.93805 0.99613 1.21074 0.93297 0.99455 0.97920 1.21334 0.99778 0.97288 0.95444 1.21061 0.96261 0.94936 0.99683 1.20947 0.93789 1.01262 0.97050 1.73721 0.98941 1.22166 1.10040 1.21096 0.88851 0.98776 0.87330 0.93654 0.96411 0.92582 0.92577 0.92040 0.92995 0.92162 0.76770 0.76368 0.84008 0.84598 0.85154 0.84712 0.84128 0.96385 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 11.20 55.49 0.62 -26.29 16 2 C 0.01 0.17 4.92 -17.43 -0.09 0.09 16 3 Si 0.90 22.53 29.59 -169.99 -5.03 17.50 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.26 -7.19 9.58 -15.06 -0.14 -7.33 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 9 N -0.59 -14.94 2.99 -172.32 -0.52 -15.46 16 10 C 0.14 2.93 6.52 -3.71 -0.02 2.91 16 11 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 12 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 13 C 0.12 2.27 2.60 -67.81 -0.18 2.09 16 14 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 15 N -0.70 -12.01 5.08 -54.66 -0.28 -12.29 16 16 C 0.60 10.93 7.79 -12.37 -0.10 10.83 16 17 O -0.52 -11.21 16.56 5.31 0.09 -11.13 16 18 C -0.04 -0.61 7.09 -82.99 -0.59 -1.20 16 19 C 0.08 1.12 11.91 -16.91 -0.20 0.92 16 20 N -0.28 -3.87 11.90 30.85 0.37 -3.50 16 21 N -0.17 -2.28 4.44 32.48 0.14 -2.14 16 22 C 0.16 1.80 6.74 -83.60 -0.56 1.24 16 23 C -0.11 -1.06 9.61 -39.40 -0.38 -1.44 16 24 C -0.10 -0.69 10.04 -39.61 -0.40 -1.08 16 25 C -0.12 -0.73 10.04 -39.55 -0.40 -1.13 16 26 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 27 C -0.11 -1.01 9.65 -39.40 -0.38 -1.39 16 28 N -0.20 -2.97 10.95 33.29 0.36 -2.61 16 29 C 0.17 4.07 4.88 -3.71 -0.02 4.05 16 30 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.40 5.79 8.30 -40.82 -0.34 5.45 16 38 H 0.22 2.42 8.06 -52.49 -0.42 2.00 16 39 H 0.14 1.32 7.68 -52.48 -0.40 0.92 16 40 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 42 H 0.14 0.57 8.06 -52.48 -0.42 0.14 16 43 H 0.14 1.27 7.67 -52.49 -0.40 0.87 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.10 2.73 6.06 -51.93 -0.31 2.42 16 LS Contribution 379.38 15.07 5.72 5.72 Total: -1.00 -33.92 379.38 -8.72 -42.64 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.04 Total: 4.45 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -4.15 Total: 3.11 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.70 Total: -62.29 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.92 -8.72 -42.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009466113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.738 kcal (2) G-P(sol) polarization free energy of solvation -33.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds