Wall clock time and date at job start Sat Apr 11 2020 06:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86793 * 120.00140 * 2 1 4 4 H 1.48504 * 109.47098 * 270.00035 * 3 2 1 5 5 H 1.48499 * 109.47211 * 30.00574 * 3 2 1 6 6 H 1.48504 * 109.46977 * 150.00666 * 3 2 1 7 7 C 1.38814 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99957 * 163.07652 * 7 2 1 9 9 N 1.36940 * 120.00124 * 343.07818 * 7 2 1 10 10 C 1.46928 * 120.63187 * 151.81453 * 9 7 2 11 11 C 1.53192 * 108.77751 * 126.40804 * 10 9 7 12 12 C 1.53040 * 109.30874 * 54.63547 * 11 10 9 13 13 C 1.53035 * 109.53925 * 298.63281 * 12 11 10 14 14 H 1.09000 * 109.52165 * 301.39629 * 13 12 11 15 15 N 1.46504 * 109.49570 * 181.32193 * 13 12 11 16 16 C 1.34773 * 119.99952 * 155.16195 * 15 13 12 17 17 O 1.21566 * 119.99970 * 359.97438 * 16 15 13 18 18 C 1.47759 * 120.00412 * 179.97438 * 16 15 13 19 19 C 1.40593 * 126.05201 * 179.97438 * 18 16 15 20 20 N 1.31248 * 106.63146 * 179.97438 * 19 18 16 21 21 N 1.40106 * 107.17282 * 359.97438 * 20 19 18 22 22 C 1.40139 * 125.56807 * 179.97438 * 21 20 19 23 23 C 1.38853 * 120.07424 * 179.69965 * 22 21 20 24 24 C 1.38113 * 119.93335 * 179.77083 * 23 22 21 25 25 C 1.38279 * 120.06624 * 0.48977 * 24 23 22 26 26 C 1.38279 * 120.14019 * 359.79162 * 25 24 23 27 27 C 1.38113 * 120.06826 * 359.94869 * 26 25 24 28 28 N 1.28709 * 108.86559 * 359.77004 * 21 20 19 29 29 C 1.46925 * 120.63069 * 331.82823 * 9 7 2 30 30 H 0.96996 * 119.99679 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58548 * 246.20439 * 10 9 7 32 32 H 1.09004 * 109.58372 * 6.47949 * 10 9 7 33 33 H 1.08997 * 109.49334 * 174.58473 * 11 10 9 34 34 H 1.08995 * 109.49879 * 294.68222 * 11 10 9 35 35 H 1.09002 * 109.45550 * 178.61232 * 12 11 10 36 36 H 1.09000 * 109.45902 * 58.65497 * 12 11 10 37 37 H 0.96990 * 120.00000 * 335.15498 * 15 13 12 38 38 H 1.08002 * 126.68373 * 359.96912 * 19 18 16 39 39 H 1.08009 * 120.02968 * 0.02882 * 23 22 21 40 40 H 1.07997 * 119.96703 * 180.25605 * 24 23 22 41 41 H 1.07998 * 119.93009 * 179.76392 * 25 24 23 42 42 H 1.08003 * 119.96823 * 179.97438 * 26 25 24 43 43 H 1.07999 * 120.03496 * 180.02562 * 27 26 25 44 44 H 1.08998 * 109.58642 * 113.80356 * 29 9 7 45 45 H 1.08996 * 109.58683 * 353.37988 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2224 -0.2728 9 7 1.3699 -2.3626 0.3441 10 6 1.8134 -3.6528 -0.2012 11 6 2.0671 -4.6183 0.9608 12 6 0.8118 -4.7024 1.8321 13 6 0.4975 -3.3213 2.4115 14 1 1.3470 -2.9701 2.9973 15 7 -0.6859 -3.4092 3.2707 16 6 -0.8710 -2.5095 4.2569 17 8 -0.0558 -1.6253 4.4339 18 6 -2.0648 -2.5978 5.1231 19 6 -2.3831 -1.7321 6.1842 20 7 -3.5179 -2.1571 6.6883 21 7 -3.9054 -3.2804 5.9460 22 6 -5.0648 -4.0381 6.1593 23 6 -5.3414 -5.1304 5.3478 24 6 -6.4825 -5.8779 5.5637 25 6 -7.3543 -5.5336 6.5803 26 6 -7.0847 -4.4430 7.3865 27 6 -5.9426 -3.6946 7.1791 28 7 -3.0249 -3.5002 5.0334 29 6 0.2261 -2.3410 1.2661 30 1 -0.4849 0.8400 0.0004 31 1 1.0397 -4.0597 -0.8523 32 1 2.7328 -3.5125 -0.7698 33 1 2.3037 -5.6068 0.5673 34 1 2.9022 -4.2552 1.5598 35 1 0.9812 -5.4076 2.6458 36 1 -0.0285 -5.0419 1.2265 37 1 -1.3362 -4.1149 3.1296 38 1 -1.8060 -0.8829 6.5193 39 1 -4.6627 -5.3975 4.5512 40 1 -6.6960 -6.7300 4.9354 41 1 -8.2478 -6.1175 6.7447 42 1 -7.7678 -4.1763 8.1794 43 1 -5.7323 -2.8432 7.8093 44 1 -0.6771 -2.6410 0.7348 45 1 0.0994 -1.3357 1.6677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009466113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:12 Heat of formation + Delta-G solvation = 105.502244 kcal Electronic energy + Delta-G solvation = -28822.097008 eV Core-core repulsion = 24842.052335 eV Total energy + Delta-G solvation = -3980.044673 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.90464 -40.89543 -40.10828 -38.90642 -35.89772 -34.99898 -34.52864 -33.61189 -32.02527 -31.89317 -31.06501 -30.02828 -27.24156 -26.18458 -24.83314 -23.98560 -23.73467 -22.74159 -22.46107 -21.45532 -20.94174 -19.55826 -18.76201 -18.49666 -17.64049 -17.31789 -17.11950 -16.71932 -16.35477 -15.92524 -15.81600 -15.57690 -15.27276 -15.16782 -15.07299 -14.74400 -14.49010 -14.16856 -14.04217 -13.92870 -13.57940 -13.31352 -12.94543 -12.61793 -12.61219 -12.57949 -12.53145 -12.28837 -12.07355 -12.00593 -11.96648 -11.73792 -11.64319 -11.40011 -11.27555 -11.21096 -10.55338 -10.19732 -10.07930 -9.41329 -8.68440 -7.88566 -5.34716 -0.63819 0.28104 0.48702 0.73213 0.78643 1.42066 1.46571 1.54855 1.94864 2.12706 2.47741 2.52078 2.70264 3.27748 3.51580 3.71327 3.80049 3.82912 3.88044 3.97340 4.13720 4.15311 4.26241 4.33307 4.34215 4.37968 4.48306 4.53504 4.60957 4.77600 4.82084 4.91807 4.99008 5.10005 5.19038 5.20579 5.21627 5.28763 5.30965 5.38173 5.45488 5.47850 5.53267 5.62698 5.75738 5.90239 6.31189 6.39610 6.59959 7.06752 7.13939 7.85191 8.34809 9.16384 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015197 B = 0.002595 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.051411 B =10785.492492 C =11698.483560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.278 1.278 5 H -0.297 1.297 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.134 3.866 11 C -0.120 4.120 12 C -0.108 4.108 13 C 0.131 3.869 14 H 0.062 0.938 15 N -0.693 5.693 16 C 0.602 3.398 17 O -0.560 6.560 18 C -0.065 4.065 19 C 0.079 3.921 20 N -0.287 5.287 21 N -0.156 5.156 22 C 0.113 3.887 23 C -0.122 4.122 24 C -0.098 4.098 25 C -0.105 4.105 26 C -0.098 4.098 27 C -0.117 4.117 28 N -0.200 5.200 29 C 0.179 3.821 30 H 0.247 0.753 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.413 0.587 38 H 0.238 0.762 39 H 0.137 0.863 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.165 0.835 43 H 0.136 0.864 44 H -0.002 1.002 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.819 -16.436 15.055 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.393 4.393 8 H 0.087 0.913 9 N -0.333 5.333 10 C 0.010 3.990 11 C -0.159 4.159 12 C -0.146 4.146 13 C 0.025 3.975 14 H 0.080 0.920 15 N -0.343 5.343 16 C 0.385 3.615 17 O -0.436 6.436 18 C -0.231 4.231 19 C -0.111 4.111 20 N -0.115 5.115 21 N -0.049 5.049 22 C 0.023 3.977 23 C -0.143 4.143 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.138 4.138 28 N -0.046 5.046 29 C 0.052 3.948 30 H 0.056 0.944 31 H 0.038 0.962 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.249 0.751 38 H 0.254 0.746 39 H 0.154 0.846 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.182 0.818 43 H 0.154 0.846 44 H 0.016 0.984 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.377 -16.331 15.386 27.200 hybrid contribution 0.976 1.810 -0.503 2.117 sum -14.401 -14.521 14.883 25.293 Atomic orbital electron populations 1.70176 1.06736 1.25597 1.55226 1.25820 0.96041 1.01665 1.01193 0.85344 0.78140 0.79725 0.77713 1.20444 1.22355 1.19547 1.19489 0.92913 0.86032 1.40876 0.91272 1.44248 1.35988 1.02928 1.50126 1.21198 0.97628 0.85628 0.94592 1.21895 0.96860 1.00155 0.97031 1.21657 0.99247 0.93820 0.99848 1.21657 0.86501 0.98328 0.90996 0.92001 1.45759 1.26107 1.31029 1.31434 1.16915 0.83125 0.81636 0.79814 1.90837 1.45326 1.35569 1.71898 1.22833 0.98244 0.98657 1.03333 1.25502 0.92849 1.00066 0.92638 1.77992 1.14491 1.00233 1.18749 1.48595 1.16652 1.20210 1.19456 1.17928 0.84366 0.94256 1.01130 1.21183 0.99932 0.93780 0.99393 1.21454 0.92182 0.99605 0.98357 1.21814 1.00193 0.96529 0.93827 1.21457 0.95454 0.94449 1.00260 1.21114 0.94444 1.01675 0.96552 1.73645 0.98876 1.21820 1.10290 1.20779 0.88121 0.97495 0.88450 0.94441 0.96168 0.92451 0.88349 0.92673 0.89550 0.90881 0.75058 0.74621 0.84558 0.81895 0.81616 0.81789 0.84574 0.98435 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.45 11.20 21.65 0.24 -58.20 16 2 C -0.05 -3.06 4.92 84.86 0.42 -2.65 16 3 Si 0.96 47.79 29.59 68.60 2.03 49.82 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 6 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 7 C -0.26 -15.12 9.58 84.03 0.81 -14.32 16 8 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 9 N -0.61 -31.67 2.99 -699.10 -2.09 -33.76 16 10 C 0.13 5.46 6.52 86.36 0.56 6.02 16 11 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 12 C -0.11 -3.23 5.35 30.62 0.16 -3.07 16 13 C 0.13 5.18 2.60 45.06 0.12 5.30 16 14 H 0.06 2.77 7.58 -2.39 -0.02 2.75 16 15 N -0.69 -24.20 5.08 -445.13 -2.26 -26.46 16 16 C 0.60 22.95 7.79 86.76 0.68 23.62 16 17 O -0.56 -25.78 16.56 -3.92 -0.06 -25.84 16 18 C -0.07 -2.12 7.09 42.20 0.30 -1.82 16 19 C 0.08 2.28 11.91 85.35 1.02 3.29 16 20 N -0.29 -8.04 11.90 -56.32 -0.67 -8.71 16 21 N -0.16 -4.30 4.44 -51.14 -0.23 -4.53 16 22 C 0.11 2.49 6.74 38.11 0.26 2.75 16 23 C -0.12 -2.16 9.61 22.39 0.22 -1.95 16 24 C -0.10 -1.06 10.04 22.25 0.22 -0.83 16 25 C -0.11 -0.85 10.04 22.29 0.22 -0.63 16 26 C -0.10 -1.01 10.04 22.25 0.22 -0.79 16 27 C -0.12 -2.02 9.65 22.39 0.22 -1.80 16 28 N -0.20 -5.92 10.95 -48.60 -0.53 -6.46 16 29 C 0.18 9.11 4.88 86.36 0.42 9.53 16 30 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 33 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.41 11.93 8.30 -92.72 -0.77 11.16 16 38 H 0.24 5.51 8.06 -2.91 -0.02 5.49 16 39 H 0.14 2.47 7.68 -2.91 -0.02 2.45 16 40 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 41 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 42 H 0.16 0.71 8.06 -2.91 -0.02 0.68 16 43 H 0.14 2.39 7.67 -2.91 -0.02 2.37 16 44 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 Total: -1.00 -78.77 379.38 2.70 -76.07 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.25 Total: 18.94 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 6.02 Total: 19.13 kcal Atomic # 7 Polarization: -132.58 SS G_CDS: -5.54 Total: -138.12 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.06 Total: -25.84 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -78.77 2.70 -76.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009466113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.576 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds