Wall clock time and date at job start Sat Apr 11 2020 06:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 120.00272 * 2 1 4 4 H 1.48500 * 109.46997 * 273.35741 * 3 2 1 5 5 H 1.48501 * 109.46950 * 33.35517 * 3 2 1 6 6 H 1.48492 * 109.47296 * 153.35355 * 3 2 1 7 7 C 1.38811 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00547 * 338.84168 * 7 2 1 9 9 N 1.36939 * 119.99724 * 158.83265 * 7 2 1 10 10 C 1.46925 * 120.63435 * 332.87601 * 9 7 2 11 11 C 1.53185 * 108.77721 * 233.60735 * 10 9 7 12 12 C 1.53038 * 109.31603 * 305.36418 * 11 10 9 13 13 C 1.53035 * 109.53676 * 61.36333 * 12 11 10 14 14 H 1.09000 * 109.49779 * 58.61926 * 13 12 11 15 15 N 1.46505 * 109.50023 * 178.68650 * 13 12 11 16 16 C 1.34769 * 120.00154 * 204.93942 * 15 13 12 17 17 O 1.21579 * 120.00047 * 359.97438 * 16 15 13 18 18 C 1.47625 * 119.99923 * 179.97438 * 16 15 13 19 19 C 1.39626 * 120.18984 * 354.53760 * 18 16 15 20 20 C 1.37851 * 119.91900 * 179.97438 * 19 18 16 21 21 C 1.38506 * 120.30275 * 359.97438 * 20 19 18 22 22 C 1.38102 * 120.38289 * 359.72278 * 21 20 19 23 23 C 1.38716 * 120.07673 * 0.55400 * 22 21 20 24 24 N 1.39810 * 120.15729 * 179.72004 * 23 22 21 25 25 C 1.36329 * 126.86453 * 293.71074 * 24 23 22 26 26 C 1.34961 * 106.77242 * 179.97438 * 25 24 23 27 27 N 1.33377 * 109.02106 * 0.02562 * 26 25 24 28 28 N 1.28766 * 109.92746 * 359.97438 * 27 26 25 29 29 C 1.46933 * 120.60410 * 152.89453 * 9 7 2 30 30 H 0.97003 * 119.99345 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58837 * 113.81698 * 10 9 7 32 32 H 1.09000 * 109.70367 * 353.46820 * 10 9 7 33 33 H 1.09003 * 109.50113 * 185.40827 * 11 10 9 34 34 H 1.09000 * 109.52508 * 65.33445 * 11 10 9 35 35 H 1.08997 * 109.45588 * 301.34671 * 12 11 10 36 36 H 1.08999 * 109.46017 * 181.38404 * 12 11 10 37 37 H 0.96998 * 119.99634 * 24.93226 * 15 13 12 38 38 H 1.07999 * 120.03923 * 359.97438 * 19 18 16 39 39 H 1.07999 * 119.85082 * 180.02562 * 20 19 18 40 40 H 1.07999 * 119.81355 * 180.02562 * 21 20 19 41 41 H 1.08001 * 119.96730 * 180.30393 * 22 21 20 42 42 H 1.07997 * 126.61134 * 359.73900 * 25 24 23 43 43 H 1.08008 * 125.48896 * 179.97438 * 26 25 24 44 44 H 1.09006 * 109.61503 * 6.62456 * 29 9 7 45 45 H 1.08992 * 109.56629 * 246.19480 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4268 2.0873 -1.3977 5 1 1.4850 2.6311 0.7698 6 1 3.5815 1.4207 0.6279 7 6 2.0102 -1.2022 0.0005 8 1 1.5248 -2.1059 0.3385 9 7 3.3103 -1.2424 -0.4277 10 6 3.8080 -0.2626 -1.4029 11 6 4.4424 -1.0142 -2.5772 12 6 5.5118 -1.9719 -2.0468 13 6 4.8638 -2.9955 -1.1117 14 1 4.0925 -3.5445 -1.6518 15 7 5.8828 -3.9309 -0.6291 16 6 5.5268 -5.1675 -0.2286 17 8 4.3599 -5.5066 -0.2673 18 6 6.5537 -6.1103 0.2572 19 6 7.9060 -5.7677 0.1971 20 6 8.8602 -6.6521 0.6528 21 6 8.4841 -7.8802 1.1711 22 6 7.1498 -8.2293 1.2421 23 6 6.1767 -7.3539 0.7828 24 7 4.8258 -7.7080 0.8486 25 6 4.2078 -8.7074 0.1574 26 6 2.9100 -8.6921 0.5276 27 7 2.7235 -7.7170 1.4183 28 7 3.8352 -7.1059 1.6393 29 6 4.2335 -2.2668 0.0794 30 1 -0.4849 0.8401 -0.0004 31 1 4.5551 0.3755 -0.9310 32 1 2.9811 0.3488 -1.7642 33 1 4.9007 -0.3001 -3.2614 34 1 3.6751 -1.5815 -3.1039 35 1 6.2662 -1.4066 -1.4995 36 1 5.9820 -2.4901 -2.8826 37 1 6.8138 -3.6602 -0.5979 38 1 8.2040 -4.8110 -0.2058 39 1 9.9058 -6.3858 0.6062 40 1 9.2382 -8.5668 1.5262 41 1 6.8638 -9.1867 1.6520 42 1 4.6672 -9.3792 -0.5525 43 1 2.1454 -9.3611 0.1609 44 1 3.6861 -2.9799 0.6959 45 1 5.0151 -1.7923 0.6726 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009752647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:22 Heat of formation + Delta-G solvation = 139.511655 kcal Electronic energy + Delta-G solvation = -29817.128519 eV Core-core repulsion = 25838.558605 eV Total energy + Delta-G solvation = -3978.569914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.02608 -40.35581 -38.90584 -37.48618 -34.85515 -34.18153 -32.68173 -31.76432 -30.81177 -30.72224 -29.85197 -28.99165 -25.29987 -24.84368 -24.00966 -22.74977 -22.00098 -21.78495 -21.44831 -20.41699 -19.77510 -18.66280 -17.63374 -16.82751 -16.40431 -15.70039 -15.55157 -15.29829 -15.15809 -14.98279 -14.76556 -14.47687 -14.20102 -13.96265 -13.82163 -13.75884 -13.23541 -13.05825 -12.82668 -12.57072 -12.35880 -12.08213 -12.03118 -11.65301 -11.52148 -11.15042 -11.04976 -10.90287 -10.76364 -10.51823 -10.15393 -9.99574 -9.81482 -9.69313 -9.58507 -9.42914 -9.39875 -9.01378 -8.93465 -8.48986 -6.93418 -5.87053 -3.23357 0.24525 0.57522 1.49473 2.20092 2.64034 2.78770 3.08227 3.34586 3.42429 3.51631 3.54583 4.18610 4.30128 4.41340 4.49368 4.58352 4.72814 4.75587 4.98430 5.02342 5.04128 5.12872 5.22059 5.26065 5.26581 5.41913 5.48641 5.52534 5.61019 5.74701 5.80195 5.80899 5.92386 6.02185 6.06694 6.18459 6.25492 6.29331 6.41133 6.49319 6.62819 6.66560 6.78795 6.79647 6.93860 7.55723 8.02513 8.27789 8.35619 8.42279 9.01596 9.78687 10.13469 11.28971 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.003377 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.363390 B = 8289.755444 C = 9653.108911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.272 1.272 7 C -0.258 4.258 8 H 0.087 0.913 9 N -0.600 5.600 10 C 0.122 3.878 11 C -0.132 4.132 12 C -0.115 4.115 13 C 0.128 3.872 14 H 0.091 0.909 15 N -0.716 5.716 16 C 0.546 3.454 17 O -0.505 6.505 18 C -0.108 4.108 19 C -0.078 4.078 20 C -0.112 4.112 21 C -0.087 4.087 22 C -0.112 4.112 23 C 0.181 3.819 24 N -0.323 5.323 25 C 0.023 3.977 26 C -0.073 4.073 27 N -0.234 5.234 28 N -0.018 5.018 29 C 0.145 3.855 30 H 0.262 0.738 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.393 0.607 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.187 0.813 43 H 0.184 0.816 44 H 0.069 0.931 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.228 -17.941 -2.814 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.175 4.175 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.197 1.197 7 C -0.386 4.386 8 H 0.105 0.895 9 N -0.324 5.324 10 C -0.003 4.003 11 C -0.171 4.171 12 C -0.154 4.154 13 C 0.023 3.977 14 H 0.109 0.891 15 N -0.368 5.368 16 C 0.331 3.669 17 O -0.380 6.380 18 C -0.113 4.113 19 C -0.097 4.097 20 C -0.130 4.130 21 C -0.105 4.105 22 C -0.132 4.132 23 C 0.089 3.911 24 N -0.107 5.107 25 C -0.126 4.126 26 C -0.228 4.228 27 N -0.104 5.104 28 N 0.003 4.997 29 C 0.018 3.982 30 H 0.072 0.928 31 H 0.043 0.957 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.227 0.773 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.204 0.796 43 H 0.201 0.799 44 H 0.087 0.913 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 21.812 -16.990 -1.797 27.707 hybrid contribution 1.269 0.417 -0.875 1.596 sum 23.081 -16.573 -2.671 28.540 Atomic orbital electron populations 1.69861 1.05701 1.26412 1.52958 1.25258 0.95206 0.97417 0.99619 0.86960 0.80074 0.84862 0.76880 1.21673 1.23137 1.19685 1.18978 0.85007 0.95041 1.39579 0.89510 1.44290 1.09042 1.32651 1.46405 1.21385 0.97491 0.92102 0.89336 1.21998 0.97808 0.98304 0.99029 1.21679 0.98464 0.96998 0.98216 1.21730 0.89745 0.89254 0.97018 0.89131 1.45983 1.11323 1.13291 1.66170 1.17986 0.88070 0.82078 0.78762 1.90917 1.18210 1.76624 1.52250 1.20261 0.94587 0.94780 1.01677 1.21329 0.90818 0.99934 0.97655 1.21278 1.00189 0.93646 0.97882 1.21233 0.95115 0.96778 0.97414 1.21182 0.92343 1.00053 0.99660 1.17270 0.80201 0.94050 0.99581 1.47565 1.07097 1.24127 1.31935 1.23380 0.94645 0.94511 1.00098 1.23110 0.95663 1.02029 1.01951 1.74313 1.17226 1.05273 1.13626 1.82233 0.89441 1.15331 1.12650 1.21206 0.92711 0.91333 0.92965 0.92811 0.95702 0.90724 0.92193 0.91393 0.92080 0.92481 0.77288 0.84409 0.84414 0.84317 0.84430 0.79624 0.79923 0.91260 0.96059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.98 13.97 55.49 0.78 -28.20 16 2 C 0.02 0.71 5.22 -17.43 -0.09 0.62 16 3 Si 0.88 22.96 24.36 -169.99 -4.14 18.82 16 4 H -0.29 -7.17 6.63 56.52 0.37 -6.79 16 5 H -0.30 -8.02 7.11 56.52 0.40 -7.62 16 6 H -0.27 -6.93 6.64 56.52 0.38 -6.55 16 7 C -0.26 -7.68 10.03 -15.06 -0.15 -7.83 16 8 H 0.09 2.85 8.05 -52.49 -0.42 2.42 16 9 N -0.60 -15.02 2.77 -172.31 -0.48 -15.49 16 10 C 0.12 2.70 4.21 -3.71 -0.02 2.68 16 11 C -0.13 -2.28 6.08 -26.62 -0.16 -2.45 16 12 C -0.12 -1.69 5.35 -26.69 -0.14 -1.84 16 13 C 0.13 2.22 2.60 -67.81 -0.18 2.04 16 14 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 15 N -0.72 -9.87 5.03 -54.70 -0.28 -10.14 16 16 C 0.55 8.53 7.72 -12.43 -0.10 8.44 16 17 O -0.51 -10.30 13.33 5.30 0.07 -10.23 16 18 C -0.11 -1.26 5.89 -104.82 -0.62 -1.88 16 19 C -0.08 -0.59 9.52 -39.21 -0.37 -0.96 16 20 C -0.11 -0.59 10.02 -39.62 -0.40 -0.99 16 21 C -0.09 -0.46 10.03 -39.53 -0.40 -0.86 16 22 C -0.11 -0.86 9.92 -39.45 -0.39 -1.26 16 23 C 0.18 2.11 6.15 -83.31 -0.51 1.60 16 24 N -0.32 -4.61 2.33 -10.32 -0.02 -4.64 16 25 C 0.02 0.27 11.56 -16.72 -0.19 0.07 16 26 C -0.07 -0.98 11.86 -18.04 -0.21 -1.19 16 27 N -0.23 -4.24 12.33 30.09 0.37 -3.87 16 28 N -0.02 -0.34 12.00 60.35 0.72 0.38 16 29 C 0.15 3.13 6.09 -3.70 -0.02 3.11 16 30 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 31 H 0.03 0.54 7.09 -51.93 -0.37 0.17 16 32 H 0.07 1.81 4.51 -51.93 -0.23 1.57 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 3.87 6.67 -40.82 -0.27 3.60 16 38 H 0.14 0.72 6.44 -52.49 -0.34 0.38 16 39 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 40 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.19 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.18 1.75 8.06 -52.48 -0.42 1.32 16 44 H 0.07 1.69 7.93 -51.93 -0.41 1.28 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -39.41 366.33 -7.26 -46.68 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.86 Total: 1.87 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.95 Total: -0.69 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: 1.09 Total: -61.97 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: 0.07 Total: -10.23 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.14 Total: 18.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -39.41 -7.26 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009752647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.190 kcal (2) G-P(sol) polarization free energy of solvation -39.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds