Wall clock time and date at job start Sat Apr 11 2020 06:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47308 * 300.00046 * 3 2 1 6 6 H 1.48503 * 109.47148 * 60.00244 * 3 2 1 7 7 C 1.38818 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99918 * 197.86336 * 7 2 1 9 9 N 1.36937 * 119.99890 * 17.86342 * 7 2 1 10 10 C 1.46852 * 120.38284 * 208.90459 * 9 7 2 11 11 C 1.53348 * 108.81060 * 236.88336 * 10 9 7 12 12 C 1.53183 * 108.76747 * 308.68251 * 11 10 9 13 13 C 1.52849 * 117.65869 * 269.97493 * 12 11 10 14 14 C 1.52820 * 117.71213 * 201.11626 * 12 11 10 15 15 H 1.08994 * 117.52431 * 0.15292 * 14 12 11 16 16 N 1.46500 * 117.50179 * 215.09480 * 14 12 11 17 17 C 1.34777 * 119.99587 * 155.02568 * 16 14 12 18 18 O 1.21569 * 120.00624 * 0.02562 * 17 16 14 19 19 C 1.47690 * 119.99843 * 180.02562 * 17 16 14 20 20 C 1.39988 * 120.38318 * 359.97438 * 19 17 16 21 21 N 1.31389 * 121.15663 * 179.72812 * 20 19 17 22 22 C 1.32542 * 121.79574 * 359.97438 * 21 20 19 23 23 N 1.37576 * 133.56512 * 180.02562 * 22 21 20 24 24 H 0.97003 * 126.23745 * 359.96875 * 23 22 21 25 25 C 1.36172 * 107.52524 * 180.02562 * 23 22 21 26 26 N 1.30060 * 110.10876 * 0.02562 * 25 23 22 27 27 C 1.35774 * 109.43425 * 359.97438 * 26 25 23 28 28 C 1.39492 * 133.74108 * 180.02562 * 27 26 25 29 29 C 1.53183 * 115.07872 * 55.44968 * 12 11 10 30 30 C 1.46844 * 120.38402 * 28.87890 * 9 7 2 31 31 H 0.96991 * 119.99952 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.57743 * 117.08232 * 10 9 7 33 33 H 1.08996 * 109.57953 * 356.68020 * 10 9 7 34 34 H 1.08998 * 109.58636 * 188.89783 * 11 10 9 35 35 H 1.09004 * 109.59159 * 68.46636 * 11 10 9 36 36 H 1.08998 * 117.50311 * 144.81652 * 13 12 11 37 37 H 1.09002 * 117.52433 * 359.74987 * 13 12 11 38 38 H 0.97003 * 120.00189 * 335.03394 * 16 14 12 39 39 H 1.07998 * 119.41855 * 359.74668 * 20 19 17 40 40 H 1.08001 * 124.94358 * 180.02562 * 25 23 22 41 41 H 1.07999 * 120.96949 * 359.97438 * 28 27 26 42 42 H 1.08996 * 109.59064 * 64.33975 * 29 12 11 43 43 H 1.08996 * 109.58807 * 184.77539 * 29 12 11 44 44 H 1.08996 * 109.58075 * 242.91821 * 30 9 7 45 45 H 1.08996 * 109.57865 * 3.32708 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0512 -1.2248 0.2863 9 7 1.3752 -2.3593 -0.3648 10 6 1.8053 -3.6491 0.1902 11 6 2.1669 -4.5891 -0.9662 12 6 1.0062 -4.6102 -1.9656 13 6 -0.0882 -5.6573 -1.7601 14 6 0.9064 -5.8044 -2.9138 15 1 1.6662 -6.5811 -2.8274 16 7 0.4118 -5.5524 -4.2696 17 6 0.7535 -6.3806 -5.2764 18 8 1.4718 -7.3371 -5.0595 19 6 0.2553 -6.1262 -6.6432 20 6 -0.5727 -5.0275 -6.9020 21 7 -1.0202 -4.7839 -8.1131 22 6 -0.7110 -5.5609 -9.1413 23 7 -1.0331 -5.5368 -10.4786 24 1 -1.5938 -4.8808 -10.9216 25 6 -0.4223 -6.6022 -11.0668 26 7 0.2507 -7.2767 -10.1815 27 6 0.1159 -6.6869 -8.9660 28 6 0.6087 -6.9763 -7.6936 29 6 0.5858 -3.2381 -2.5015 30 6 0.2557 -2.3248 -1.3146 31 1 -0.4849 0.8400 0.0004 32 1 0.9944 -4.0839 0.7746 33 1 2.6777 -3.5003 0.8264 34 1 2.3354 -5.5946 -0.5807 35 1 3.0689 -4.2293 -1.4613 36 1 -1.1103 -5.3728 -2.0098 37 1 0.0175 -6.3371 -0.9146 38 1 -0.1616 -4.7893 -4.4426 39 1 -0.8482 -4.3685 -6.0920 40 1 -0.4873 -6.8510 -12.1158 41 1 1.2451 -7.8326 -7.5256 42 1 1.4025 -2.8055 -3.0792 43 1 -0.2948 -3.3471 -3.1345 44 1 -0.6511 -2.6776 -0.8233 45 1 0.1085 -1.3045 -1.6686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016647721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:28 Heat of formation + Delta-G solvation = 102.822609 kcal Electronic energy + Delta-G solvation = -28662.751822 eV Core-core repulsion = 24682.590952 eV Total energy + Delta-G solvation = -3980.160870 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79923 -40.25623 -38.84165 -37.92271 -35.52111 -34.09345 -33.34651 -31.81622 -31.41174 -30.12268 -30.10717 -28.21918 -25.04095 -24.34163 -24.24461 -22.49981 -22.32480 -21.93100 -20.96462 -20.46500 -19.10964 -18.43758 -18.13084 -17.32496 -16.57165 -16.44157 -16.16066 -15.65841 -14.94149 -14.86930 -14.67444 -14.31945 -14.17145 -13.85515 -13.58240 -13.43452 -13.35045 -13.07992 -12.95030 -12.62743 -12.28288 -11.74958 -11.63255 -11.53163 -11.50436 -11.37756 -10.99131 -10.74270 -10.51011 -10.30571 -10.28552 -9.96378 -9.71926 -9.62706 -9.58520 -9.37662 -9.33365 -9.05687 -8.49839 -8.45426 -6.64633 -5.79992 -3.22617 0.32383 0.42321 2.04903 2.27787 2.65935 2.89911 3.36112 3.44682 3.46986 3.50318 3.63173 3.93222 4.18477 4.24051 4.41627 4.49255 4.50577 4.60824 4.90570 4.97361 5.12561 5.14241 5.28646 5.38414 5.50204 5.58156 5.62984 5.65915 5.85558 5.99371 6.04899 6.08368 6.10684 6.27491 6.43831 6.53490 6.56201 6.56759 6.63504 6.69908 6.82684 6.99850 7.16868 7.32410 7.34483 7.41900 7.63799 7.79869 8.08588 8.45779 9.21262 9.84865 10.41375 11.27831 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.002370 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.459853 B =11812.656791 C =13038.458008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.900 3.100 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.590 5.590 10 C 0.149 3.851 11 C -0.098 4.098 12 C -0.096 4.096 13 C -0.181 4.181 14 C 0.069 3.931 15 H 0.134 0.866 16 N -0.688 5.688 17 C 0.572 3.428 18 O -0.536 6.536 19 C -0.196 4.196 20 C 0.177 3.823 21 N -0.482 5.482 22 C 0.256 3.744 23 N -0.588 5.588 24 H 0.431 0.569 25 C 0.276 3.724 26 N -0.480 5.480 27 C -0.009 4.009 28 C 0.049 3.951 29 C -0.106 4.106 30 C 0.173 3.827 31 H 0.253 0.747 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.401 0.599 39 H 0.171 0.829 40 H 0.228 0.772 41 H 0.157 0.843 42 H 0.062 0.938 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 -12.512 -19.897 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.730 3.270 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.022 3.978 11 C -0.138 4.138 12 C -0.097 4.097 13 C -0.220 4.220 14 C -0.037 4.037 15 H 0.151 0.849 16 N -0.337 5.337 17 C 0.358 3.642 18 O -0.414 6.414 19 C -0.205 4.205 20 C 0.007 3.993 21 N -0.195 5.195 22 C 0.020 3.980 23 N -0.203 5.203 24 H 0.271 0.729 25 C -0.012 4.012 26 N -0.199 5.199 27 C -0.128 4.128 28 C 0.022 3.978 29 C -0.145 4.145 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.238 0.762 39 H 0.188 0.812 40 H 0.244 0.756 41 H 0.175 0.825 42 H 0.081 0.919 43 H 0.062 0.938 44 H 0.036 0.964 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.817 -13.120 -20.058 24.270 hybrid contribution -0.303 1.648 -0.182 1.686 sum -4.120 -11.472 -20.240 23.627 Atomic orbital electron populations 1.70039 1.05258 1.25368 1.53948 1.25043 0.95251 0.98429 1.00960 0.86263 0.79475 0.84041 0.77255 1.20248 1.21581 1.21765 1.19236 0.92885 0.85019 1.40924 0.91724 1.43984 1.37819 1.01573 1.47819 1.20862 0.97451 0.86892 0.92549 1.21695 0.95897 0.99343 0.96834 1.21971 0.98275 0.91125 0.98366 1.23546 0.95918 1.02977 0.99525 1.21919 1.01163 1.02673 0.77898 0.84852 1.45280 1.51441 1.29380 1.07632 1.17726 0.80318 0.82520 0.83630 1.90780 1.37281 1.29390 1.83911 1.20672 1.05061 0.99751 0.94983 1.22782 0.90683 0.93542 0.92246 1.66410 1.25182 1.29669 0.98208 1.19159 0.97568 0.94887 0.86412 1.42901 1.44354 1.27057 1.05941 0.72866 1.25566 0.91584 0.83918 1.00126 1.70511 1.22357 1.28549 0.98459 1.19563 1.02865 0.96337 0.94071 1.20859 0.92706 0.96911 0.87373 1.21827 0.99101 0.93616 0.99955 1.20751 0.88886 0.98627 0.87035 0.93716 0.96229 0.92657 0.92789 0.91772 0.88815 0.88345 0.76242 0.81216 0.75583 0.82522 0.91935 0.93815 0.96359 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.23 55.49 0.62 -24.97 16 2 C 0.00 0.04 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.25 -6.74 9.54 -15.06 -0.14 -6.88 16 8 H 0.07 1.72 7.89 -52.49 -0.41 1.31 16 9 N -0.59 -14.29 2.94 -172.26 -0.51 -14.80 16 10 C 0.15 3.03 6.52 -3.67 -0.02 3.00 16 11 C -0.10 -1.65 5.83 -26.46 -0.15 -1.81 16 12 C -0.10 -1.51 1.94 -154.49 -0.30 -1.81 16 13 C -0.18 -2.50 9.86 -26.79 -0.26 -2.76 16 14 C 0.07 0.96 6.14 -68.00 -0.42 0.54 16 15 H 0.13 1.97 7.40 -51.93 -0.38 1.59 16 16 N -0.69 -8.54 5.30 -54.87 -0.29 -8.83 16 17 C 0.57 7.66 7.77 -12.40 -0.10 7.56 16 18 O -0.54 -8.86 15.97 5.30 0.08 -8.78 16 19 C -0.20 -2.27 5.89 -104.85 -0.62 -2.88 16 20 C 0.18 1.82 10.69 -17.09 -0.18 1.64 16 21 N -0.48 -5.34 10.36 -11.96 -0.12 -5.46 16 22 C 0.26 2.66 8.45 -155.64 -1.31 1.35 16 23 N -0.59 -3.64 6.20 -13.22 -0.08 -3.72 16 24 H 0.43 1.25 8.96 -40.82 -0.37 0.88 16 25 C 0.28 1.55 12.97 -89.70 -1.16 0.38 16 26 N -0.48 -4.84 11.29 -12.02 -0.14 -4.97 16 27 C -0.01 -0.10 7.23 -84.69 -0.61 -0.71 16 28 C 0.05 0.58 9.75 -38.58 -0.38 0.20 16 29 C -0.11 -1.84 5.37 -26.45 -0.14 -1.98 16 30 C 0.17 3.91 5.40 -3.67 -0.02 3.89 16 31 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.11 7.92 -51.93 -0.41 0.70 16 34 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.40 4.21 5.15 -40.82 -0.21 4.00 16 39 H 0.17 1.33 6.39 -52.49 -0.34 0.99 16 40 H 0.23 0.02 8.06 -52.49 -0.42 -0.40 16 41 H 0.16 1.80 7.72 -52.49 -0.41 1.40 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.04 0.64 6.75 -51.93 -0.35 0.29 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.09 2.30 5.93 -51.93 -0.31 1.99 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -34.77 369.86 -11.50 -46.27 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.70 Total: 3.66 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -5.91 Total: -0.32 kcal Atomic # 7 Polarization: -62.24 SS G_CDS: -0.52 Total: -62.75 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: 0.08 Total: -8.78 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.77 -11.50 -46.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016647721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.090 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds