Wall clock time and date at job start Sat Apr 11 2020 06:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99972 * 2 1 4 4 H 1.48496 * 109.47178 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47308 * 300.00046 * 3 2 1 6 6 H 1.48503 * 109.47148 * 60.00244 * 3 2 1 7 7 C 1.38818 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99918 * 197.86336 * 7 2 1 9 9 N 1.36937 * 119.99890 * 17.86342 * 7 2 1 10 10 C 1.46852 * 120.38284 * 208.90459 * 9 7 2 11 11 C 1.53348 * 108.81060 * 236.88336 * 10 9 7 12 12 C 1.53183 * 108.76747 * 308.68251 * 11 10 9 13 13 C 1.52849 * 117.65869 * 269.97493 * 12 11 10 14 14 C 1.52820 * 117.71213 * 201.11626 * 12 11 10 15 15 H 1.08994 * 117.52431 * 0.15292 * 14 12 11 16 16 N 1.46500 * 117.50179 * 215.09480 * 14 12 11 17 17 C 1.34777 * 119.99587 * 155.02568 * 16 14 12 18 18 O 1.21569 * 120.00624 * 0.02562 * 17 16 14 19 19 C 1.47690 * 119.99843 * 180.02562 * 17 16 14 20 20 C 1.39988 * 120.38318 * 359.97438 * 19 17 16 21 21 N 1.31389 * 121.15663 * 179.72812 * 20 19 17 22 22 C 1.32542 * 121.79574 * 359.97438 * 21 20 19 23 23 N 1.37576 * 133.56512 * 180.02562 * 22 21 20 24 24 H 0.97003 * 126.23745 * 359.96875 * 23 22 21 25 25 C 1.36172 * 107.52524 * 180.02562 * 23 22 21 26 26 N 1.30060 * 110.10876 * 0.02562 * 25 23 22 27 27 C 1.35774 * 109.43425 * 359.97438 * 26 25 23 28 28 C 1.39492 * 133.74108 * 180.02562 * 27 26 25 29 29 C 1.53183 * 115.07872 * 55.44968 * 12 11 10 30 30 C 1.46844 * 120.38402 * 28.87890 * 9 7 2 31 31 H 0.96991 * 119.99952 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.57743 * 117.08232 * 10 9 7 33 33 H 1.08996 * 109.57953 * 356.68020 * 10 9 7 34 34 H 1.08998 * 109.58636 * 188.89783 * 11 10 9 35 35 H 1.09004 * 109.59159 * 68.46636 * 11 10 9 36 36 H 1.08998 * 117.50311 * 144.81652 * 13 12 11 37 37 H 1.09002 * 117.52433 * 359.74987 * 13 12 11 38 38 H 0.97003 * 120.00189 * 335.03394 * 16 14 12 39 39 H 1.07998 * 119.41855 * 359.74668 * 20 19 17 40 40 H 1.08001 * 124.94358 * 180.02562 * 25 23 22 41 41 H 1.07999 * 120.96949 * 359.97438 * 28 27 26 42 42 H 1.08996 * 109.59064 * 64.33975 * 29 12 11 43 43 H 1.08996 * 109.58807 * 184.77539 * 29 12 11 44 44 H 1.08996 * 109.58075 * 242.91821 * 30 9 7 45 45 H 1.08996 * 109.57865 * 3.32708 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0512 -1.2248 0.2863 9 7 1.3752 -2.3593 -0.3648 10 6 1.8053 -3.6491 0.1902 11 6 2.1669 -4.5891 -0.9662 12 6 1.0062 -4.6102 -1.9656 13 6 -0.0882 -5.6573 -1.7601 14 6 0.9064 -5.8044 -2.9138 15 1 1.6662 -6.5811 -2.8274 16 7 0.4118 -5.5524 -4.2696 17 6 0.7535 -6.3806 -5.2764 18 8 1.4718 -7.3371 -5.0595 19 6 0.2553 -6.1262 -6.6432 20 6 -0.5727 -5.0275 -6.9020 21 7 -1.0202 -4.7839 -8.1131 22 6 -0.7110 -5.5609 -9.1413 23 7 -1.0331 -5.5368 -10.4786 24 1 -1.5938 -4.8808 -10.9216 25 6 -0.4223 -6.6022 -11.0668 26 7 0.2507 -7.2767 -10.1815 27 6 0.1159 -6.6869 -8.9660 28 6 0.6087 -6.9763 -7.6936 29 6 0.5858 -3.2381 -2.5015 30 6 0.2557 -2.3248 -1.3146 31 1 -0.4849 0.8400 0.0004 32 1 0.9944 -4.0839 0.7746 33 1 2.6777 -3.5003 0.8264 34 1 2.3354 -5.5946 -0.5807 35 1 3.0689 -4.2293 -1.4613 36 1 -1.1103 -5.3728 -2.0098 37 1 0.0175 -6.3371 -0.9146 38 1 -0.1616 -4.7893 -4.4426 39 1 -0.8482 -4.3685 -6.0920 40 1 -0.4873 -6.8510 -12.1158 41 1 1.2451 -7.8326 -7.5256 42 1 1.4025 -2.8055 -3.0792 43 1 -0.2948 -3.3471 -3.1345 44 1 -0.6511 -2.6776 -0.8233 45 1 0.1085 -1.3045 -1.6686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016647721.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:27 Heat of formation + Delta-G solvation = 80.596417 kcal Electronic energy + Delta-G solvation = -28663.715622 eV Core-core repulsion = 24682.590952 eV Total energy + Delta-G solvation = -3981.124670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.46090 -41.31813 -39.98557 -38.89834 -37.11624 -34.79995 -34.66757 -33.35284 -32.36788 -31.70895 -30.93976 -29.79766 -26.24574 -25.82935 -24.98033 -24.02516 -23.26382 -22.85503 -22.36519 -21.57804 -19.81495 -19.79254 -19.18601 -18.41063 -17.90331 -17.44579 -16.87190 -16.83094 -16.64849 -15.92631 -15.79947 -15.47535 -15.32603 -15.04575 -14.94624 -14.75030 -14.49875 -14.24797 -14.12652 -13.75651 -13.70346 -13.31058 -13.04380 -12.87788 -12.60304 -12.53673 -12.31995 -12.27399 -12.22508 -11.95747 -11.74669 -11.37541 -11.34720 -11.20032 -10.67160 -10.47542 -10.41003 -10.12920 -9.78693 -9.62985 -8.58913 -7.84181 -5.29535 -0.49393 -0.31266 1.46247 1.49098 1.49112 1.58929 1.61332 1.76782 1.90156 2.53185 2.64690 2.99184 3.01036 3.30126 3.30525 3.53867 3.58385 3.65957 3.70248 3.85746 3.90829 4.02698 4.10580 4.17241 4.22756 4.57438 4.63597 4.66167 4.75120 4.79784 4.87753 4.90363 4.94603 4.99948 5.04707 5.12769 5.26146 5.27377 5.34707 5.41532 5.48313 5.57984 5.69092 5.83313 6.09568 6.40047 6.44237 6.56679 6.66509 7.06544 7.19677 7.92129 8.42405 9.20710 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015531 B = 0.002370 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.459853 B =11812.656791 C =13038.458008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.049 4.049 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.293 1.293 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.609 5.609 10 C 0.146 3.854 11 C -0.088 4.088 12 C -0.115 4.115 13 C -0.167 4.167 14 C 0.085 3.915 15 H 0.130 0.870 16 N -0.680 5.680 17 C 0.576 3.424 18 O -0.571 6.571 19 C -0.201 4.201 20 C 0.175 3.825 21 N -0.492 5.492 22 C 0.243 3.757 23 N -0.575 5.575 24 H 0.448 0.552 25 C 0.307 3.693 26 N -0.526 5.526 27 C -0.024 4.024 28 C 0.035 3.965 29 C -0.091 4.091 30 C 0.179 3.821 31 H 0.250 0.750 32 H 0.018 0.982 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.053 0.947 36 H 0.103 0.897 37 H 0.111 0.889 38 H 0.411 0.589 39 H 0.193 0.807 40 H 0.284 0.716 41 H 0.148 0.852 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.001 0.999 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.750 -13.146 -22.176 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.244 4.244 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.216 1.216 6 H -0.220 1.220 7 C -0.390 4.390 8 H 0.079 0.921 9 N -0.332 5.332 10 C 0.020 3.980 11 C -0.127 4.127 12 C -0.117 4.117 13 C -0.206 4.206 14 C -0.021 4.021 15 H 0.147 0.853 16 N -0.330 5.330 17 C 0.364 3.636 18 O -0.452 6.452 19 C -0.209 4.209 20 C 0.006 3.994 21 N -0.204 5.204 22 C 0.005 3.995 23 N -0.190 5.190 24 H 0.292 0.708 25 C 0.020 3.980 26 N -0.246 5.246 27 C -0.143 4.143 28 C 0.007 3.993 29 C -0.130 4.130 30 C 0.053 3.947 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.122 0.878 37 H 0.129 0.871 38 H 0.250 0.750 39 H 0.209 0.791 40 H 0.299 0.701 41 H 0.166 0.834 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.019 0.981 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.374 -13.746 -22.360 26.609 hybrid contribution -0.157 1.787 0.421 1.843 sum -4.531 -11.958 -21.939 25.394 Atomic orbital electron populations 1.70174 1.06473 1.25687 1.55391 1.25724 0.95996 1.01231 1.01462 0.85304 0.78626 0.80307 0.76794 1.19449 1.21570 1.22021 1.19506 0.92977 0.86379 1.40179 0.92098 1.44261 1.38023 1.02212 1.48722 1.20984 0.97049 0.86026 0.93923 1.21529 0.95871 0.99651 0.95623 1.21822 0.99296 0.90873 0.99682 1.23641 0.95832 1.01449 0.99644 1.21741 1.01123 1.00739 0.78469 0.85260 1.45193 1.51228 1.29592 1.06985 1.17938 0.79543 0.81873 0.84260 1.90760 1.38966 1.30926 1.84501 1.20479 1.06010 1.00597 0.93820 1.23063 0.90216 0.93335 0.92790 1.66483 1.25444 1.29902 0.98572 1.19447 0.97628 0.94606 0.87804 1.43004 1.44107 1.27536 1.04383 0.70828 1.26725 0.88138 0.81791 1.01391 1.70523 1.25016 1.30393 0.98621 1.19721 1.03158 0.97000 0.94464 1.20886 0.93210 0.97028 0.88189 1.21565 1.00012 0.93472 0.97929 1.20571 0.87970 0.97829 0.88338 0.94120 0.96353 0.93117 0.89977 0.92793 0.87841 0.87094 0.75012 0.79084 0.70122 0.83401 0.93050 0.90736 0.98123 0.92629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.16 11.23 21.65 0.24 -53.92 16 2 C -0.05 -2.69 4.88 84.86 0.41 -2.28 16 3 Si 0.96 44.64 29.59 68.60 2.03 46.67 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 7 C -0.26 -14.21 9.54 84.03 0.80 -13.41 16 8 H 0.06 3.30 7.89 -2.92 -0.02 3.27 16 9 N -0.61 -29.96 2.94 -698.90 -2.05 -32.01 16 10 C 0.15 5.90 6.52 86.43 0.56 6.47 16 11 C -0.09 -2.84 5.83 30.77 0.18 -2.66 16 12 C -0.12 -3.45 1.94 -52.17 -0.10 -3.56 16 13 C -0.17 -4.19 9.86 30.56 0.30 -3.89 16 14 C 0.09 2.21 6.14 44.94 0.28 2.48 16 15 H 0.13 3.58 7.40 -2.39 -0.02 3.57 16 16 N -0.68 -15.77 5.30 -445.79 -2.36 -18.13 16 17 C 0.58 15.07 7.77 86.74 0.67 15.74 16 18 O -0.57 -18.87 15.97 -3.93 -0.06 -18.94 16 19 C -0.20 -4.56 5.89 -20.01 -0.12 -4.68 16 20 C 0.18 3.40 10.69 85.18 0.91 4.31 16 21 N -0.49 -10.19 10.36 -191.77 -1.99 -12.18 16 22 C 0.24 4.67 8.45 133.91 1.13 5.80 16 23 N -0.57 -5.47 6.20 -195.74 -1.21 -6.68 16 24 H 0.45 1.11 8.96 -92.71 -0.83 0.28 16 25 C 0.31 2.41 12.97 180.03 2.33 4.75 16 26 N -0.53 -9.79 11.29 -191.94 -2.17 -11.96 16 27 C -0.02 -0.53 7.23 39.46 0.29 -0.25 16 28 C 0.03 0.82 9.75 22.92 0.22 1.05 16 29 C -0.09 -3.09 5.37 30.77 0.17 -2.92 16 30 C 0.18 8.19 5.40 86.43 0.47 8.66 16 31 H 0.25 14.03 8.31 -92.72 -0.77 13.26 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 2.05 7.92 -2.39 -0.02 2.03 16 34 H 0.08 2.20 8.10 -2.39 -0.02 2.18 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.41 7.73 5.15 -92.71 -0.48 7.26 16 39 H 0.19 2.63 6.39 -2.91 -0.02 2.61 16 40 H 0.28 -1.43 8.06 -2.91 -0.02 -1.45 16 41 H 0.15 3.62 7.72 -2.91 -0.02 3.60 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.04 6.75 -2.39 -0.02 2.02 16 44 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 45 H 0.06 2.92 5.93 -2.39 -0.01 2.91 16 Total: -1.00 -78.21 369.86 0.69 -77.52 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -0.25 Total: 14.00 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 8.51 Total: 15.62 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -9.54 Total: -134.88 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.06 Total: -18.94 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -78.21 0.69 -77.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016647721.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.116 kcal (2) G-P(sol) polarization free energy of solvation -78.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds