Wall clock time and date at job start Sat Apr 11 2020 06:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48503 * 109.47215 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47385 * 299.99914 * 3 2 1 6 6 H 1.48499 * 109.47397 * 59.99935 * 3 2 1 7 7 C 1.38809 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00272 * 197.86176 * 7 2 1 9 9 N 1.36936 * 120.00225 * 17.86264 * 7 2 1 10 10 C 1.46849 * 120.38884 * 208.90889 * 9 7 2 11 11 C 1.53349 * 108.81037 * 236.88104 * 10 9 7 12 12 C 1.53180 * 108.76627 * 308.67826 * 11 10 9 13 13 C 1.52845 * 117.66127 * 269.97211 * 12 11 10 14 14 C 1.52824 * 117.71310 * 201.11824 * 12 11 10 15 15 H 1.09000 * 117.50101 * 215.13121 * 14 12 11 16 16 N 1.46498 * 117.50163 * 0.13905 * 14 12 11 17 17 C 1.34773 * 120.00233 * 204.99723 * 16 14 12 18 18 O 1.21538 * 119.99796 * 0.02562 * 17 16 14 19 19 C 1.47967 * 120.00155 * 180.27353 * 17 16 14 20 20 C 1.39732 * 119.43288 * 179.45455 * 19 17 16 21 21 C 1.36985 * 119.60555 * 179.76813 * 20 19 17 22 22 C 1.39905 * 118.35472 * 0.50186 * 21 20 19 23 23 N 1.35434 * 133.80697 * 179.74538 * 22 21 20 24 24 C 1.30213 * 109.57498 * 179.97438 * 23 22 21 25 25 N 1.35994 * 110.17843 * 359.97438 * 24 23 22 26 26 H 0.96999 * 126.29527 * 180.02562 * 25 24 23 27 27 C 1.37936 * 107.41640 * 0.02562 * 25 24 23 28 28 N 1.31890 * 133.83229 * 180.02562 * 27 25 24 29 29 C 1.53180 * 115.07716 * 55.45301 * 12 11 10 30 30 C 1.46846 * 120.38033 * 28.88179 * 9 7 2 31 31 H 0.97002 * 119.99544 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.58172 * 117.07554 * 10 9 7 33 33 H 1.09003 * 109.57730 * 356.67547 * 10 9 7 34 34 H 1.09002 * 109.58691 * 188.89310 * 11 10 9 35 35 H 1.08997 * 109.59094 * 68.46520 * 11 10 9 36 36 H 1.09000 * 117.50391 * 144.81127 * 13 12 11 37 37 H 1.09003 * 117.50212 * 359.76759 * 13 12 11 38 38 H 0.97008 * 119.99826 * 25.00442 * 16 14 12 39 39 H 1.08006 * 120.19642 * 0.02562 * 20 19 17 40 40 H 1.08000 * 120.82346 * 180.26053 * 21 20 19 41 41 H 1.07998 * 124.91131 * 179.97438 * 24 23 22 42 42 H 1.09004 * 109.59050 * 64.33817 * 29 12 11 43 43 H 1.09005 * 109.59032 * 184.77367 * 29 12 11 44 44 H 1.09008 * 109.57899 * 242.92584 * 30 9 7 45 45 H 1.08999 * 109.58009 * 3.32505 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3965 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2248 0.2863 9 7 1.3751 -2.3593 -0.3648 10 6 1.8050 -3.6491 0.1902 11 6 2.1666 -4.5891 -0.9662 12 6 1.0059 -4.6101 -1.9655 13 6 -0.0885 -5.6572 -1.7601 14 6 0.9060 -5.8045 -2.9137 15 1 0.5385 -5.6168 -3.9226 16 7 1.9276 -6.8480 -2.7973 17 6 2.2159 -7.6300 -3.8564 18 8 1.6286 -7.4692 -4.9082 19 6 3.2435 -8.6880 -3.7370 20 6 3.5248 -9.4995 -4.8392 21 6 4.4788 -10.4768 -4.7340 22 6 5.1362 -10.6347 -3.5092 23 7 6.0993 -11.4762 -3.0636 24 6 6.3718 -11.2075 -1.8190 25 7 5.6019 -10.1749 -1.3826 26 1 5.6141 -9.7850 -0.4945 27 6 4.8005 -9.7838 -2.4350 28 7 3.8791 -8.8521 -2.5843 29 6 0.5856 -3.2381 -2.5014 30 6 0.2556 -2.3247 -1.3146 31 1 -0.4849 0.8401 -0.0004 32 1 0.9942 -4.0838 0.7746 33 1 2.6775 -3.5003 0.8265 34 1 2.3352 -5.5946 -0.5806 35 1 3.0686 -4.2294 -1.4612 36 1 -1.1106 -5.3727 -2.0097 37 1 0.0175 -6.3367 -0.9144 38 1 2.3966 -6.9761 -1.9578 39 1 2.9962 -9.3542 -5.7698 40 1 4.7149 -11.1124 -5.5747 41 1 7.1034 -11.7292 -1.2199 42 1 1.4024 -2.8055 -3.0792 43 1 -0.2950 -3.3470 -3.1345 44 1 -0.6513 -2.6775 -0.8233 45 1 0.1084 -1.3044 -1.6687 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016683671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:36 Heat of formation + Delta-G solvation = 81.623063 kcal Electronic energy + Delta-G solvation = -28732.801963 eV Core-core repulsion = 24751.721811 eV Total energy + Delta-G solvation = -3981.080152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.42067 -41.33621 -40.07131 -38.81879 -37.15008 -34.99558 -34.43296 -33.38870 -32.31733 -31.69273 -31.03853 -29.89939 -26.32488 -26.10605 -24.56873 -24.07188 -23.27286 -22.66702 -22.54320 -21.63658 -19.87416 -19.65698 -19.29196 -18.32400 -18.21900 -17.30772 -16.90461 -16.78557 -16.25231 -15.98711 -15.90451 -15.64787 -15.35802 -15.14549 -14.94771 -14.77384 -14.37085 -14.19155 -13.96999 -13.78726 -13.65998 -13.29398 -13.11352 -12.89878 -12.61366 -12.55066 -12.34222 -12.26753 -12.22674 -12.00973 -11.80075 -11.49170 -11.39114 -11.25088 -10.76588 -10.49200 -10.43048 -10.04427 -9.83551 -9.57839 -8.62656 -7.86389 -5.32464 -0.70984 0.08159 1.34369 1.44004 1.45019 1.47602 1.57510 1.89693 1.92194 2.51154 2.68872 2.95611 2.96717 3.22769 3.28519 3.45462 3.62657 3.78400 3.80502 3.86122 3.96435 3.97726 4.11924 4.19111 4.51481 4.55675 4.58540 4.67211 4.72139 4.83630 4.86316 4.91861 4.95594 4.99302 5.01218 5.07598 5.15673 5.30301 5.36822 5.37955 5.44777 5.54615 5.65815 5.78058 6.01635 6.35206 6.41266 6.57812 6.65663 7.02268 7.16425 7.88591 8.39619 9.18773 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.002328 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.206732 B =12022.691121 C =12931.515223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.050 4.050 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.261 4.261 8 H 0.064 0.936 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.082 4.082 12 C -0.114 4.114 13 C -0.166 4.166 14 C 0.081 3.919 15 H 0.129 0.871 16 N -0.669 5.669 17 C 0.576 3.424 18 O -0.559 6.559 19 C 0.098 3.902 20 C -0.122 4.122 21 C -0.029 4.029 22 C 0.014 3.986 23 N -0.530 5.530 24 C 0.317 3.683 25 N -0.578 5.578 26 H 0.446 0.554 27 C 0.214 3.786 28 N -0.460 5.460 29 C -0.093 4.093 30 C 0.180 3.820 31 H 0.250 0.750 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.053 0.947 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.416 0.584 39 H 0.165 0.835 40 H 0.173 0.827 41 H 0.282 0.718 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.001 0.999 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.280 -25.690 -3.851 28.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.217 1.217 6 H -0.219 1.219 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.331 5.331 10 C 0.021 3.979 11 C -0.122 4.122 12 C -0.115 4.115 13 C -0.204 4.204 14 C -0.025 4.025 15 H 0.146 0.854 16 N -0.318 5.318 17 C 0.362 3.638 18 O -0.437 6.437 19 C -0.050 4.050 20 C -0.146 4.146 21 C -0.056 4.056 22 C -0.107 4.107 23 N -0.251 5.251 24 C 0.030 3.970 25 N -0.194 5.194 26 H 0.290 0.710 27 C -0.026 4.026 28 N -0.176 5.176 29 C -0.133 4.133 30 C 0.055 3.945 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.072 0.928 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.254 0.746 39 H 0.182 0.818 40 H 0.191 0.809 41 H 0.297 0.703 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.019 0.981 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.959 -25.545 -4.358 28.136 hybrid contribution 0.070 1.586 0.839 1.796 sum 11.029 -23.959 -3.519 26.610 Atomic orbital electron populations 1.70183 1.06616 1.25751 1.55280 1.25767 0.95999 1.01414 1.01362 0.85274 0.78662 0.80126 0.76783 1.19225 1.21747 1.21853 1.19516 0.93021 0.86339 1.40301 0.91873 1.44244 1.37943 1.02320 1.48630 1.20975 0.97130 0.85973 0.93779 1.21427 0.95758 0.99264 0.95704 1.21807 0.99296 0.90598 0.99806 1.23615 0.95953 1.01032 0.99790 1.21784 0.93281 0.90424 0.97033 0.85362 1.45198 1.38942 1.32813 1.14857 1.17933 0.81553 0.80793 0.83498 1.90772 1.52822 1.71015 1.29100 1.20670 0.96903 0.97460 0.89939 1.21657 0.98289 0.94675 0.99965 1.20738 0.92415 0.96660 0.95820 1.20248 0.98352 0.96325 0.95825 1.70513 1.16543 1.26626 1.11398 1.26750 0.93392 0.85747 0.91143 1.43024 1.32073 1.30834 1.13423 0.71035 1.19143 0.96249 0.96514 0.90684 1.66075 1.07017 1.19050 1.25439 1.21640 1.00076 0.93587 0.97967 1.20544 0.88096 0.97661 0.88243 0.94108 0.96349 0.92803 0.90341 0.92801 0.87504 0.87516 0.74603 0.81750 0.80939 0.70306 0.93326 0.91122 0.98064 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.33 11.23 21.65 0.24 -55.09 16 2 C -0.05 -2.80 4.88 84.86 0.41 -2.39 16 3 Si 0.96 45.14 29.59 68.60 2.03 47.17 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.26 -14.44 9.54 84.03 0.80 -13.64 16 8 H 0.06 3.42 7.89 -2.91 -0.02 3.40 16 9 N -0.61 -30.50 2.94 -698.89 -2.05 -32.56 16 10 C 0.15 5.96 6.52 86.43 0.56 6.52 16 11 C -0.08 -2.68 5.37 30.77 0.17 -2.51 16 12 C -0.11 -3.65 1.94 -52.17 -0.10 -3.76 16 13 C -0.17 -4.51 9.86 30.55 0.30 -4.21 16 14 C 0.08 2.29 6.14 44.94 0.28 2.57 16 15 H 0.13 3.89 7.40 -2.39 -0.02 3.87 16 16 N -0.67 -17.51 5.33 -445.54 -2.38 -19.89 16 17 C 0.58 16.03 7.80 86.82 0.68 16.71 16 18 O -0.56 -18.33 15.85 -3.84 -0.06 -18.39 16 19 C 0.10 2.33 6.74 41.96 0.28 2.61 16 20 C -0.12 -2.43 9.55 22.34 0.21 -2.21 16 21 C -0.03 -0.50 10.16 22.38 0.23 -0.28 16 22 C 0.01 0.27 7.25 39.69 0.29 0.56 16 23 N -0.53 -8.39 11.27 -191.65 -2.16 -10.55 16 24 C 0.32 2.15 12.96 180.04 2.33 4.48 16 25 N -0.58 -5.48 6.22 -195.70 -1.22 -6.69 16 26 H 0.45 1.56 8.96 -92.71 -0.83 0.73 16 27 C 0.21 4.01 8.46 134.06 1.13 5.15 16 28 N -0.46 -10.21 9.54 -181.84 -1.74 -11.95 16 29 C -0.09 -3.57 5.83 30.77 0.18 -3.39 16 30 C 0.18 8.71 5.40 86.43 0.47 9.18 16 31 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.05 2.14 7.92 -2.39 -0.02 2.12 16 34 H 0.08 2.04 6.75 -2.39 -0.02 2.02 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.42 9.86 6.43 -92.70 -0.60 9.27 16 39 H 0.16 2.94 7.61 -2.91 -0.02 2.92 16 40 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.28 -1.60 8.06 -2.91 -0.02 -1.63 16 42 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 43 H 0.07 2.40 8.10 -2.38 -0.02 2.38 16 44 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 45 H 0.05 3.01 5.93 -2.39 -0.01 3.00 16 Total: -1.00 -76.59 371.97 0.52 -76.06 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -0.37 Total: 16.49 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 8.22 Total: 15.39 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -9.30 Total: -136.72 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.06 Total: -18.39 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.59 0.52 -76.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016683671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.686 kcal (2) G-P(sol) polarization free energy of solvation -76.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds