Wall clock time and date at job start Sat Apr 11 2020 06:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99825 * 2 1 4 4 H 1.48507 * 109.46880 * 240.00030 * 3 2 1 5 5 H 1.48499 * 109.47165 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47055 * 120.00143 * 3 2 1 7 7 C 1.38815 * 120.00316 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99930 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99646 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99817 * 180.27527 * 9 7 2 11 11 H 1.08999 * 110.48080 * 357.68885 * 10 9 7 12 12 C 1.55055 * 110.53697 * 235.02132 * 10 9 7 13 13 C 1.55425 * 101.94039 * 281.35923 * 12 10 9 14 14 C 1.54315 * 103.97885 * 319.97614 * 13 12 10 15 15 H 1.09004 * 112.35972 * 262.39213 * 14 13 12 16 16 C 1.53777 * 109.06885 * 137.96843 * 14 13 12 17 17 N 1.47212 * 106.37894 * 227.57621 * 16 14 13 18 18 C 1.34782 * 126.70017 * 211.27611 * 17 16 14 19 19 O 1.21568 * 119.99855 * 182.84529 * 18 17 16 20 20 C 1.47691 * 119.99814 * 2.84939 * 18 17 16 21 21 C 1.39978 * 120.38411 * 330.71245 * 20 18 17 22 22 N 1.31386 * 121.15872 * 179.97438 * 21 20 18 23 23 C 1.32540 * 121.79509 * 0.02562 * 22 21 20 24 24 N 1.37583 * 133.56929 * 179.97438 * 23 22 21 25 25 H 0.96996 * 126.23613 * 0.02562 * 24 23 22 26 26 C 1.36164 * 107.52245 * 180.02562 * 24 23 22 27 27 N 1.30055 * 110.12028 * 359.97438 * 26 24 23 28 28 C 1.35774 * 109.43108 * 0.02562 * 27 26 24 29 29 C 1.39485 * 133.74690 * 180.28378 * 28 27 26 30 30 C 1.48775 * 107.04137 * 30.85872 * 17 16 14 31 31 C 1.53783 * 105.59925 * 329.57377 * 30 17 16 32 32 H 1.08999 * 111.70824 * 255.91232 * 31 30 17 33 33 H 0.96999 * 120.00128 * 0.02562 * 1 2 3 34 34 H 0.97000 * 120.00405 * 0.02562 * 9 7 2 35 35 H 1.09004 * 110.90240 * 39.64760 * 12 10 9 36 36 H 1.09000 * 110.90741 * 163.24411 * 12 10 9 37 37 H 1.09007 * 110.51691 * 201.34824 * 13 12 10 38 38 H 1.08997 * 110.51504 * 78.60339 * 13 12 10 39 39 H 1.09004 * 110.06903 * 346.80072 * 16 14 13 40 40 H 1.08997 * 110.07639 * 108.28697 * 16 14 13 41 41 H 1.08002 * 119.42075 * 359.95600 * 21 20 18 42 42 H 1.08008 * 124.94388 * 179.97438 * 26 24 23 43 43 H 1.07994 * 120.97520 * 359.93566 * 29 28 27 44 44 H 1.09006 * 110.84568 * 210.39478 * 30 17 16 45 45 H 1.08994 * 110.06363 * 88.34825 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6567 0.0050 11 1 3.1326 -3.4769 -0.0325 12 6 1.6138 -4.5466 -1.1845 13 6 0.2685 -5.1275 -0.6665 14 6 0.5424 -5.4324 0.8213 15 1 0.7942 -6.4794 0.9904 16 6 -0.6744 -4.9982 1.6553 17 7 -0.1449 -4.2255 2.7910 18 6 -0.6754 -4.1444 4.0273 19 8 -0.1627 -3.4253 4.8628 20 6 -1.8795 -4.9293 4.3671 21 6 -2.8156 -5.2535 3.3783 22 7 -3.8917 -5.9513 3.6635 23 6 -4.1413 -6.3786 4.8930 24 7 -5.1643 -7.1077 5.4541 25 1 -5.9405 -7.4580 4.9897 26 6 -4.8886 -7.2477 6.7802 27 7 -3.7674 -6.6553 7.0690 28 6 -3.2501 -6.0951 5.9456 29 6 -2.0944 -5.3613 5.6779 30 6 1.0972 -3.5551 2.3208 31 6 1.6917 -4.4880 1.2525 32 1 2.5494 -5.0423 1.6335 33 1 -0.4850 0.8400 -0.0004 34 1 0.3557 -2.3881 -0.0005 35 1 1.4620 -3.9479 -2.0826 36 1 2.3366 -5.3420 -1.3665 37 1 0.0149 -6.0414 -1.2037 38 1 -0.5289 -4.3910 -0.7653 39 1 -1.3364 -4.3744 1.0546 40 1 -1.2125 -5.8746 2.0165 41 1 -2.6507 -4.9240 2.3631 42 1 -5.5104 -7.7743 7.4892 43 1 -1.3885 -5.1306 6.4619 44 1 1.8037 -3.4277 3.1412 45 1 0.8562 -2.5876 1.8804 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026279082.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:49 Heat of formation + Delta-G solvation = 86.597690 kcal Electronic energy + Delta-G solvation = -29738.187995 eV Core-core repulsion = 25757.323559 eV Total energy + Delta-G solvation = -3980.864436 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.62815 -40.33790 -38.85540 -37.68104 -34.99518 -33.92388 -33.35917 -31.60361 -30.95935 -30.43268 -28.83801 -28.39028 -25.37349 -24.72262 -24.09682 -23.38253 -22.69402 -21.93527 -19.95062 -19.43623 -18.93082 -18.67544 -18.08953 -17.48994 -16.43133 -16.35563 -15.96371 -15.66882 -15.11987 -14.79921 -14.59230 -14.32729 -14.13368 -13.90871 -13.50292 -13.37486 -13.14055 -12.84510 -12.75840 -12.51644 -12.24327 -11.93150 -11.45641 -11.36638 -11.23763 -10.93255 -10.80438 -10.67232 -10.53930 -10.28168 -10.26094 -10.13887 -9.98803 -9.84451 -9.62844 -9.35691 -9.11174 -8.99247 -8.83761 -8.23499 -6.98646 -5.82132 -3.11729 0.51429 0.68702 2.20838 2.44247 2.94095 3.15078 3.43834 3.49187 3.49562 3.67289 3.82883 4.10300 4.41008 4.54408 4.55821 4.65954 4.73624 4.81001 4.91465 5.02394 5.18984 5.42045 5.48247 5.52273 5.61939 5.64057 5.76911 5.79336 5.83301 5.87075 5.99019 6.02414 6.07386 6.15010 6.20812 6.31324 6.44486 6.50174 6.62310 6.66363 6.72785 6.81455 6.90973 7.16210 7.33002 7.54076 7.67766 7.84475 8.35706 8.39323 9.47735 10.01622 10.36124 11.39282 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015518 B = 0.002960 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.964263 B = 9455.800123 C =10279.701698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.250 4.250 8 H 0.072 0.928 9 N -0.707 5.707 10 C 0.176 3.824 11 H 0.068 0.932 12 C -0.141 4.141 13 C -0.113 4.113 14 C -0.097 4.097 15 H 0.080 0.920 16 C 0.095 3.905 17 N -0.605 5.605 18 C 0.578 3.422 19 O -0.536 6.536 20 C -0.184 4.184 21 C 0.166 3.834 22 N -0.485 5.485 23 C 0.252 3.748 24 N -0.589 5.589 25 H 0.430 0.570 26 C 0.273 3.727 27 N -0.481 5.481 28 C -0.008 4.008 29 C 0.040 3.960 30 C 0.098 3.902 31 C -0.123 4.123 32 H 0.075 0.925 33 H 0.257 0.743 34 H 0.386 0.614 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.182 0.818 42 H 0.226 0.774 43 H 0.153 0.847 44 H 0.065 0.935 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.062 -18.942 6.325 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.211 1.211 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.346 5.346 10 C 0.064 3.936 11 H 0.086 0.914 12 C -0.180 4.180 13 C -0.151 4.151 14 C -0.117 4.117 15 H 0.099 0.901 16 C -0.028 4.028 17 N -0.337 5.337 18 C 0.365 3.635 19 O -0.414 6.414 20 C -0.192 4.192 21 C -0.002 4.002 22 N -0.198 5.198 23 C 0.016 3.984 24 N -0.204 5.204 25 H 0.269 0.731 26 C -0.016 4.016 27 N -0.200 5.200 28 C -0.128 4.128 29 C 0.013 3.987 30 C -0.022 4.022 31 C -0.146 4.146 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.198 0.802 42 H 0.242 0.758 43 H 0.171 0.829 44 H 0.084 0.916 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.910 -18.507 7.066 21.721 hybrid contribution -0.263 0.707 -0.306 0.813 sum -9.172 -17.800 6.760 21.135 Atomic orbital electron populations 1.69629 1.05073 1.26019 1.56815 1.24735 0.95482 0.97730 1.02422 0.86290 0.78596 0.83568 0.77852 1.21302 1.21756 1.21130 1.19239 0.91052 0.83913 1.43908 0.91000 1.42454 1.05943 0.99717 1.86488 1.21048 0.96130 0.86176 0.90248 0.91422 1.23193 0.95997 0.98844 1.00005 1.22539 0.98966 1.00072 0.93515 1.22541 0.94502 0.99145 0.95489 0.90126 1.22629 0.97110 0.95211 0.87830 1.48843 1.27330 1.48171 1.09316 1.17364 0.83034 0.81890 0.81178 1.90803 1.62472 1.40174 1.47956 1.20725 0.98990 1.04775 0.94725 1.23352 0.86587 0.90487 0.99808 1.66488 1.21388 1.13746 1.18132 1.19181 0.90604 0.97004 0.91630 1.42849 1.21456 1.46318 1.09814 0.73051 1.25507 0.94868 0.98443 0.82739 1.70489 1.08830 1.13757 1.26904 1.19524 0.97793 1.04689 0.90761 1.20790 0.93140 0.89260 0.95550 1.23086 0.83928 0.99357 0.95866 1.23187 0.96903 0.96149 0.98311 0.90633 0.93326 0.77928 0.91135 0.92400 0.92457 0.90917 0.90335 0.90942 0.80171 0.75750 0.82942 0.91630 0.85105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.73 13.06 55.49 0.72 -26.00 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 4 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.45 9.72 -15.06 -0.15 -6.60 16 8 H 0.07 1.81 7.68 -52.49 -0.40 1.41 16 9 N -0.71 -15.79 2.93 -51.71 -0.15 -15.94 16 10 C 0.18 3.11 3.52 -66.15 -0.23 2.88 16 11 H 0.07 1.22 7.84 -51.93 -0.41 0.81 16 12 C -0.14 -2.09 6.64 -24.36 -0.16 -2.25 16 13 C -0.11 -1.49 6.16 -24.76 -0.15 -1.64 16 14 C -0.10 -1.27 3.91 -88.53 -0.35 -1.62 16 15 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.10 1.27 4.72 -3.25 -0.02 1.26 16 17 N -0.60 -10.11 3.35 -171.46 -0.57 -10.68 16 18 C 0.58 10.30 7.64 -12.40 -0.09 10.20 16 19 O -0.54 -11.53 17.02 5.31 0.09 -11.43 16 20 C -0.18 -2.74 5.67 -104.85 -0.59 -3.33 16 21 C 0.17 2.20 9.03 -17.09 -0.15 2.04 16 22 N -0.48 -6.33 10.36 -11.96 -0.12 -6.45 16 23 C 0.25 3.07 8.45 -155.63 -1.31 1.75 16 24 N -0.59 -4.48 6.20 -13.22 -0.08 -4.56 16 25 H 0.43 1.76 8.96 -40.82 -0.37 1.40 16 26 C 0.27 1.91 12.97 -89.71 -1.16 0.75 16 27 N -0.48 -5.64 11.29 -12.02 -0.14 -5.78 16 28 C -0.01 -0.11 7.23 -84.69 -0.61 -0.72 16 29 C 0.04 0.58 9.77 -38.58 -0.38 0.20 16 30 C 0.10 1.83 6.47 -2.38 -0.02 1.82 16 31 C -0.12 -1.93 3.84 -88.53 -0.34 -2.27 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.39 9.22 7.17 -40.82 -0.29 8.93 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 1.06 6.91 -51.93 -0.36 0.70 16 39 H 0.08 1.06 6.63 -51.93 -0.34 0.71 16 40 H 0.07 0.82 5.82 -51.93 -0.30 0.52 16 41 H 0.18 2.14 5.00 -52.49 -0.26 1.88 16 42 H 0.23 0.31 8.06 -52.48 -0.42 -0.11 16 43 H 0.15 2.13 7.97 -52.49 -0.42 1.72 16 44 H 0.07 1.28 8.00 -51.93 -0.42 0.87 16 45 H 0.13 2.98 5.22 -51.93 -0.27 2.71 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -33.89 360.62 -11.17 -45.06 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -5.51 Total: 11.28 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -5.82 Total: 2.18 kcal Atomic # 7 Polarization: -69.07 SS G_CDS: -0.34 Total: -69.41 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.89 -11.17 -45.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026279082.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.662 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds