Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99806 * 2 1 4 4 H 1.48501 * 109.46929 * 240.00098 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47157 * 119.99565 * 3 2 1 7 7 C 1.38804 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00740 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99561 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.41141 * 32.53247 * 10 9 7 12 12 C 1.54832 * 110.45824 * 269.92311 * 10 9 7 13 13 C 1.54830 * 102.73539 * 203.05659 * 12 10 9 14 14 C 1.54154 * 104.34385 * 38.23260 * 13 12 10 15 15 H 1.08993 * 112.65508 * 99.31651 * 14 13 12 16 16 C 1.54467 * 108.80131 * 224.03719 * 14 13 12 17 17 N 1.48333 * 104.30693 * 138.53860 * 16 14 13 18 18 C 1.34779 * 128.19197 * 138.24970 * 17 16 14 19 19 O 1.21534 * 120.00326 * 354.50270 * 18 17 16 20 20 C 1.47983 * 119.99826 * 174.49275 * 18 17 16 21 21 C 1.39724 * 119.42671 * 184.87057 * 20 18 17 22 22 C 1.36998 * 119.59862 * 180.02562 * 21 20 18 23 23 C 1.39895 * 118.35635 * 0.02562 * 22 21 20 24 24 N 1.35430 * 133.81085 * 180.02562 * 23 22 21 25 25 C 1.30217 * 109.57943 * 179.97438 * 24 23 22 26 26 N 1.35997 * 110.17638 * 359.97438 * 25 24 23 27 27 H 0.97003 * 126.29008 * 180.02562 * 26 25 24 28 28 C 1.37938 * 107.41459 * 0.02562 * 26 25 24 29 29 N 1.31887 * 133.82558 * 180.33217 * 28 26 25 30 30 C 1.48335 * 103.61080 * 318.23783 * 17 16 14 31 31 C 1.54151 * 110.45370 * 154.99974 * 10 9 7 32 32 H 1.08996 * 112.65641 * 19.39567 * 31 10 9 33 33 H 0.96998 * 120.00080 * 0.02562 * 1 2 3 34 34 H 0.96993 * 120.00191 * 359.97438 * 9 7 2 35 35 H 1.08995 * 110.75980 * 321.37456 * 12 10 9 36 36 H 1.09006 * 110.75574 * 84.74613 * 12 10 9 37 37 H 1.09000 * 110.46176 * 279.51975 * 13 12 10 38 38 H 1.08994 * 110.46342 * 156.94643 * 13 12 10 39 39 H 1.08999 * 110.46432 * 257.25162 * 16 14 13 40 40 H 1.09001 * 110.46488 * 19.83559 * 16 14 13 41 41 H 1.07995 * 120.20488 * 359.97438 * 21 20 18 42 42 H 1.07993 * 120.81810 * 179.97438 * 22 21 20 43 43 H 1.07997 * 124.90924 * 180.02562 * 25 24 23 44 44 H 1.09007 * 110.46273 * 283.06326 * 30 17 16 45 45 H 1.08997 * 110.57770 * 160.53221 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9942 -3.5552 0.5499 12 6 2.3272 -4.1264 -1.4501 13 6 2.5259 -5.6528 -1.2834 14 6 1.4938 -6.0575 -0.2123 15 1 0.5893 -6.4877 -0.6421 16 6 2.1688 -7.0182 0.7915 17 7 1.6698 -6.5742 2.1160 18 6 1.2679 -7.3355 3.1530 19 8 1.1950 -8.5422 3.0288 20 6 0.9155 -6.7019 4.4431 21 6 0.5992 -7.5077 5.5399 22 6 0.2720 -6.9249 6.7357 23 6 0.2662 -5.5281 6.8146 24 7 -0.0004 -4.6462 7.8072 25 6 0.1389 -3.4311 7.3604 26 7 0.5048 -3.4519 6.0508 27 1 0.6714 -2.6790 5.4888 28 6 0.5955 -4.7742 5.6685 29 7 0.9096 -5.3789 4.5393 30 6 1.7182 -5.0942 2.0290 31 6 1.1940 -4.7778 0.6109 32 1 0.1316 -4.5342 0.6146 33 1 -0.4850 0.8400 -0.0004 34 1 0.3556 -2.3880 0.0005 35 1 1.4699 -3.9158 -2.0895 36 1 3.2295 -3.6602 -1.8460 37 1 3.5371 -5.8701 -0.9394 38 1 2.3228 -6.1682 -2.2221 39 1 1.8673 -8.0472 0.5959 40 1 3.2534 -6.9217 0.7410 41 1 0.6118 -8.5834 5.4454 42 1 0.0238 -7.5287 7.5960 43 1 -0.0134 -2.5362 7.9455 44 1 2.7422 -4.7389 2.1449 45 1 1.0723 -4.6448 2.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026292767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = 81.894137 kcal Electronic energy + Delta-G solvation = -29631.673405 eV Core-core repulsion = 25650.605008 eV Total energy + Delta-G solvation = -3981.068397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58452 -40.37825 -38.96380 -37.70014 -35.17754 -34.01250 -33.36485 -31.54907 -31.04333 -30.30794 -29.16254 -28.36800 -25.32066 -25.00813 -23.82240 -22.95341 -22.84089 -21.81511 -20.39356 -19.73666 -19.03605 -18.78006 -17.66387 -17.18017 -17.13891 -16.08998 -15.90626 -15.66502 -15.27891 -15.03069 -14.78445 -14.34508 -14.19305 -13.89743 -13.55679 -13.20522 -13.09774 -12.96709 -12.82988 -12.42722 -12.30597 -11.81723 -11.65738 -11.48785 -11.28778 -11.19258 -10.83084 -10.81655 -10.65731 -10.33496 -10.27584 -10.25764 -10.16725 -9.96050 -9.70900 -9.20828 -9.16244 -8.90445 -8.84971 -8.56610 -6.99569 -5.82567 -3.10973 0.22834 0.98248 2.26795 2.28554 2.84914 2.92530 3.37302 3.43153 3.43407 3.70435 3.77372 4.06931 4.28395 4.52692 4.59234 4.77527 4.80797 4.82081 4.86732 4.99669 5.33257 5.42931 5.45896 5.50457 5.53854 5.61797 5.67771 5.75968 5.81090 5.85129 5.89434 5.97859 6.02866 6.15177 6.18676 6.25680 6.30092 6.43249 6.49599 6.59723 6.71427 6.79909 6.81327 7.04021 7.37127 7.44823 7.59355 7.64225 8.10411 8.36084 9.47178 10.05699 10.40154 11.39823 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.004000 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.925466 B = 6998.435234 C = 9834.318590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.720 5.720 10 C 0.185 3.815 11 H 0.056 0.944 12 C -0.142 4.142 13 C -0.116 4.116 14 C -0.103 4.103 15 H 0.084 0.916 16 C 0.108 3.892 17 N -0.602 5.602 18 C 0.593 3.407 19 O -0.540 6.540 20 C 0.123 3.877 21 C -0.126 4.126 22 C -0.028 4.028 23 C 0.023 3.977 24 N -0.496 5.496 25 C 0.290 3.710 26 N -0.583 5.583 27 H 0.437 0.563 28 C 0.235 3.765 29 N -0.439 5.439 30 C 0.100 3.900 31 C -0.108 4.108 32 H 0.086 0.914 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.228 0.772 44 H 0.070 0.930 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.913 -11.913 10.928 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.360 5.360 10 C 0.074 3.926 11 H 0.074 0.926 12 C -0.183 4.183 13 C -0.154 4.154 14 C -0.122 4.122 15 H 0.102 0.898 16 C -0.014 4.014 17 N -0.333 5.333 18 C 0.380 3.620 19 O -0.418 6.418 20 C -0.026 4.026 21 C -0.149 4.149 22 C -0.056 4.056 23 C -0.099 4.099 24 N -0.216 5.216 25 C 0.001 3.999 26 N -0.197 5.197 27 H 0.278 0.722 28 C -0.003 4.003 29 N -0.154 5.154 30 C -0.022 4.022 31 C -0.129 4.129 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.174 0.826 42 H 0.166 0.834 43 H 0.244 0.756 44 H 0.088 0.912 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.936 -12.183 11.104 16.597 hybrid contribution 0.248 1.423 -0.468 1.519 sum 2.184 -10.759 10.635 15.285 Atomic orbital electron populations 1.69648 1.05070 1.25714 1.57725 1.24707 0.95445 0.97556 1.03097 0.86322 0.78550 0.83755 0.77865 1.21269 1.21743 1.21377 1.19204 0.90935 0.84166 1.42629 0.91296 1.42442 1.05671 0.99701 1.88181 1.21134 0.93721 0.85170 0.92574 0.92560 1.23215 1.01410 0.92909 1.00768 1.22383 0.97744 0.97702 0.97562 1.22748 0.98706 0.95371 0.95405 0.89779 1.22722 0.98249 0.99329 0.81054 1.49016 1.61763 1.09119 1.13449 1.17274 0.77464 0.85429 0.81848 1.90780 1.55030 1.13286 1.82684 1.20861 0.99597 0.87364 0.94745 1.21520 0.99700 1.02210 0.91499 1.20433 0.96221 0.90713 0.98192 1.19903 1.03995 0.94961 0.91050 1.70465 1.22811 0.98702 1.29602 1.25604 0.94628 0.98290 0.81329 1.43003 1.57694 1.06425 1.12617 0.72186 1.19007 1.03077 0.86055 0.92202 1.66508 1.14502 1.10561 1.23841 1.23182 1.02457 0.77912 0.98647 1.23109 1.01067 0.95053 0.93654 0.89564 0.93501 0.78230 0.91595 0.92274 0.91752 0.92225 0.90215 0.90625 0.82577 0.83366 0.75620 0.91178 0.86701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.00 13.06 55.49 0.72 -26.28 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 21.47 29.55 -169.99 -5.02 16.44 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.24 -6.25 9.96 -15.06 -0.15 -6.40 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 N -0.72 -16.91 5.20 -51.90 -0.27 -17.18 16 10 C 0.18 3.41 3.06 -66.36 -0.20 3.20 16 11 H 0.06 1.06 7.13 -51.93 -0.37 0.69 16 12 C -0.14 -2.37 6.57 -24.80 -0.16 -2.53 16 13 C -0.12 -1.50 6.36 -25.16 -0.16 -1.66 16 14 C -0.10 -1.38 3.95 -88.14 -0.35 -1.73 16 15 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 16 C 0.11 1.42 6.60 -2.26 -0.01 1.40 16 17 N -0.60 -8.88 3.31 -169.96 -0.56 -9.44 16 18 C 0.59 9.16 7.89 -12.27 -0.10 9.06 16 19 O -0.54 -9.23 16.57 5.34 0.09 -9.14 16 20 C 0.12 1.73 6.73 -82.96 -0.56 1.18 16 21 C -0.13 -1.47 9.55 -39.48 -0.38 -1.85 16 22 C -0.03 -0.31 10.16 -39.41 -0.40 -0.71 16 23 C 0.02 0.29 7.25 -84.58 -0.61 -0.33 16 24 N -0.50 -5.73 11.27 -11.93 -0.13 -5.86 16 25 C 0.29 2.42 12.96 -89.73 -1.16 1.25 16 26 N -0.58 -5.82 6.22 -13.21 -0.08 -5.90 16 27 H 0.44 3.67 8.96 -40.82 -0.37 3.31 16 28 C 0.23 3.08 8.46 -155.74 -1.32 1.76 16 29 N -0.44 -6.29 6.68 -8.82 -0.06 -6.35 16 30 C 0.10 1.52 6.01 -2.26 -0.01 1.51 16 31 C -0.11 -1.73 3.63 -88.15 -0.32 -2.05 16 32 H 0.09 1.50 7.83 -51.93 -0.41 1.10 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.38 9.71 7.63 -40.82 -0.31 9.40 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.06 0.77 7.18 -51.93 -0.37 0.39 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.03 7.85 -51.93 -0.41 0.62 16 40 H 0.08 0.90 7.20 -51.93 -0.37 0.53 16 41 H 0.16 1.59 7.62 -52.49 -0.40 1.19 16 42 H 0.15 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.23 0.71 8.06 -52.49 -0.42 0.28 16 44 H 0.07 1.08 7.20 -51.92 -0.37 0.70 16 45 H 0.12 1.86 5.26 -51.93 -0.27 1.59 16 LS Contribution 366.49 15.07 5.52 5.52 Total: -1.00 -33.09 366.49 -11.53 -44.62 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.74 Total: 11.88 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -6.00 Total: 1.69 kcal Atomic # 7 Polarization: -70.63 SS G_CDS: -0.38 Total: -71.02 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.14 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.09 -11.53 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026292767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.517 kcal (2) G-P(sol) polarization free energy of solvation -33.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds