Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 119.99806 * 2 1 4 4 H 1.48501 * 109.46929 * 240.00098 * 3 2 1 5 5 H 1.48501 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47157 * 119.99565 * 3 2 1 7 7 C 1.38804 * 120.00386 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00740 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.46508 * 119.99561 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.41141 * 32.53247 * 10 9 7 12 12 C 1.54832 * 110.45824 * 269.92311 * 10 9 7 13 13 C 1.54830 * 102.73539 * 203.05659 * 12 10 9 14 14 C 1.54154 * 104.34385 * 38.23260 * 13 12 10 15 15 H 1.08993 * 112.65508 * 99.31651 * 14 13 12 16 16 C 1.54467 * 108.80131 * 224.03719 * 14 13 12 17 17 N 1.48333 * 104.30693 * 138.53860 * 16 14 13 18 18 C 1.34779 * 128.19197 * 138.24970 * 17 16 14 19 19 O 1.21534 * 120.00326 * 354.50270 * 18 17 16 20 20 C 1.47983 * 119.99826 * 174.49275 * 18 17 16 21 21 C 1.39724 * 119.42671 * 184.87057 * 20 18 17 22 22 C 1.36998 * 119.59862 * 180.02562 * 21 20 18 23 23 C 1.39895 * 118.35635 * 0.02562 * 22 21 20 24 24 N 1.35430 * 133.81085 * 180.02562 * 23 22 21 25 25 C 1.30217 * 109.57943 * 179.97438 * 24 23 22 26 26 N 1.35997 * 110.17638 * 359.97438 * 25 24 23 27 27 H 0.97003 * 126.29008 * 180.02562 * 26 25 24 28 28 C 1.37938 * 107.41459 * 0.02562 * 26 25 24 29 29 N 1.31887 * 133.82558 * 180.33217 * 28 26 25 30 30 C 1.48335 * 103.61080 * 318.23783 * 17 16 14 31 31 C 1.54151 * 110.45370 * 154.99974 * 10 9 7 32 32 H 1.08996 * 112.65641 * 19.39567 * 31 10 9 33 33 H 0.96998 * 120.00080 * 0.02562 * 1 2 3 34 34 H 0.96993 * 120.00191 * 359.97438 * 9 7 2 35 35 H 1.08995 * 110.75980 * 321.37456 * 12 10 9 36 36 H 1.09006 * 110.75574 * 84.74613 * 12 10 9 37 37 H 1.09000 * 110.46176 * 279.51975 * 13 12 10 38 38 H 1.08994 * 110.46342 * 156.94643 * 13 12 10 39 39 H 1.08999 * 110.46432 * 257.25162 * 16 14 13 40 40 H 1.09001 * 110.46488 * 19.83559 * 16 14 13 41 41 H 1.07995 * 120.20488 * 359.97438 * 21 20 18 42 42 H 1.07993 * 120.81810 * 179.97438 * 22 21 20 43 43 H 1.07997 * 124.90924 * 180.02562 * 25 24 23 44 44 H 1.09007 * 110.46273 * 283.06326 * 30 17 16 45 45 H 1.08997 * 110.57770 * 160.53221 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9942 -3.5552 0.5499 12 6 2.3272 -4.1264 -1.4501 13 6 2.5259 -5.6528 -1.2834 14 6 1.4938 -6.0575 -0.2123 15 1 0.5893 -6.4877 -0.6421 16 6 2.1688 -7.0182 0.7915 17 7 1.6698 -6.5742 2.1160 18 6 1.2679 -7.3355 3.1530 19 8 1.1950 -8.5422 3.0288 20 6 0.9155 -6.7019 4.4431 21 6 0.5992 -7.5077 5.5399 22 6 0.2720 -6.9249 6.7357 23 6 0.2662 -5.5281 6.8146 24 7 -0.0004 -4.6462 7.8072 25 6 0.1389 -3.4311 7.3604 26 7 0.5048 -3.4519 6.0508 27 1 0.6714 -2.6790 5.4888 28 6 0.5955 -4.7742 5.6685 29 7 0.9096 -5.3789 4.5393 30 6 1.7182 -5.0942 2.0290 31 6 1.1940 -4.7778 0.6109 32 1 0.1316 -4.5342 0.6146 33 1 -0.4850 0.8400 -0.0004 34 1 0.3556 -2.3880 0.0005 35 1 1.4699 -3.9158 -2.0895 36 1 3.2295 -3.6602 -1.8460 37 1 3.5371 -5.8701 -0.9394 38 1 2.3228 -6.1682 -2.2221 39 1 1.8673 -8.0472 0.5959 40 1 3.2534 -6.9217 0.7410 41 1 0.6118 -8.5834 5.4454 42 1 0.0238 -7.5287 7.5960 43 1 -0.0134 -2.5362 7.9455 44 1 2.7422 -4.7389 2.1449 45 1 1.0723 -4.6448 2.7832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026292767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = 61.909938 kcal Electronic energy + Delta-G solvation = -29632.539985 eV Core-core repulsion = 25650.605008 eV Total energy + Delta-G solvation = -3981.934977 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.43277 -41.54606 -40.10230 -38.77390 -36.66007 -35.15648 -34.71652 -32.80823 -32.34067 -31.32831 -30.52921 -29.66752 -26.68570 -26.25655 -24.84879 -24.49910 -23.95898 -22.63155 -21.67462 -20.87382 -20.33084 -19.71891 -19.02173 -18.62950 -18.16434 -17.32176 -17.00824 -16.84820 -16.43195 -16.23445 -15.87645 -15.59431 -15.55525 -15.11567 -14.82556 -14.65205 -14.17396 -14.12469 -13.98095 -13.61532 -13.49683 -13.25392 -13.00944 -12.87323 -12.57918 -12.38976 -12.34799 -12.28070 -12.10567 -11.85216 -11.66042 -11.50468 -11.48101 -11.38944 -11.32427 -10.85777 -10.18544 -10.06437 -9.88714 -9.60406 -8.93785 -7.90530 -5.18021 -0.69245 0.08233 1.35002 1.45021 1.48661 1.50803 1.56657 1.83539 1.89853 2.58473 2.72235 2.92432 3.16591 3.38214 3.40166 3.55712 3.64268 3.73981 3.80292 3.95978 4.11137 4.16900 4.26504 4.40756 4.50412 4.51214 4.55721 4.60900 4.63514 4.66518 4.78107 4.87724 4.89742 4.98482 5.00032 5.05682 5.14765 5.22855 5.26158 5.40680 5.47411 5.50043 5.53724 5.63117 6.02345 6.31245 6.38862 6.51432 6.60463 6.95763 7.37521 8.14474 8.37550 9.32685 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.004000 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3138.925466 B = 6998.435234 C = 9834.318590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.072 4.072 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.299 1.299 6 H -0.277 1.277 7 C -0.234 4.234 8 H 0.075 0.925 9 N -0.731 5.731 10 C 0.180 3.820 11 H 0.055 0.945 12 C -0.139 4.139 13 C -0.101 4.101 14 C -0.094 4.094 15 H 0.089 0.911 16 C 0.109 3.891 17 N -0.604 5.604 18 C 0.590 3.410 19 O -0.561 6.561 20 C 0.096 3.904 21 C -0.121 4.121 22 C -0.026 4.026 23 C 0.015 3.985 24 N -0.524 5.524 25 C 0.313 3.687 26 N -0.583 5.583 27 H 0.442 0.558 28 C 0.208 3.792 29 N -0.456 5.456 30 C 0.111 3.889 31 C -0.104 4.104 32 H 0.066 0.934 33 H 0.249 0.751 34 H 0.371 0.629 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.169 0.831 42 H 0.177 0.823 43 H 0.278 0.722 44 H 0.070 0.930 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.060 -12.384 11.811 17.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.203 1.203 7 C -0.366 4.366 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.071 3.929 11 H 0.073 0.927 12 C -0.179 4.179 13 C -0.139 4.139 14 C -0.114 4.114 15 H 0.107 0.893 16 C -0.012 4.012 17 N -0.335 5.335 18 C 0.379 3.621 19 O -0.441 6.441 20 C -0.051 4.051 21 C -0.144 4.144 22 C -0.053 4.053 23 C -0.107 4.107 24 N -0.245 5.245 25 C 0.026 3.974 26 N -0.198 5.198 27 H 0.285 0.715 28 C -0.031 4.031 29 N -0.172 5.172 30 C -0.012 4.012 31 C -0.124 4.124 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.203 0.797 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.187 0.813 42 H 0.194 0.806 43 H 0.294 0.706 44 H 0.088 0.912 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 3.133 -12.687 11.969 17.721 hybrid contribution -0.117 1.598 -0.667 1.735 sum 3.016 -11.089 11.302 16.119 Atomic orbital electron populations 1.69807 1.06526 1.25850 1.59891 1.25430 0.96176 1.00658 1.04125 0.85329 0.77228 0.79769 0.78139 1.20846 1.22524 1.20278 1.19569 0.91326 0.85217 1.40506 0.90747 1.42614 1.05220 1.00871 1.88329 1.21345 0.93517 0.83947 0.94085 0.92687 1.23062 1.00431 0.95821 0.98596 1.22320 0.98551 0.94619 0.98417 1.22708 0.99295 0.94004 0.95367 0.89251 1.22841 0.99126 0.99319 0.79940 1.49048 1.61671 1.08729 1.14041 1.17516 0.76982 0.85264 0.82372 1.90752 1.56107 1.13999 1.83208 1.20825 1.01636 0.87770 0.94910 1.21651 0.99044 1.02623 0.91110 1.20750 0.95327 0.90539 0.98717 1.20263 1.03454 0.95824 0.91129 1.70510 1.24641 0.99657 1.29685 1.26701 0.91130 0.99010 0.80597 1.43159 1.57616 1.05656 1.13328 0.71519 1.19331 1.04069 0.87438 0.92291 1.66375 1.15109 1.10894 1.24784 1.22973 1.02020 0.78423 0.97757 1.22932 0.99378 0.95443 0.94645 0.91565 0.94228 0.79724 0.93417 0.92574 0.89816 0.90057 0.89655 0.88913 0.81309 0.80552 0.70628 0.91197 0.87809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.37 13.06 21.65 0.28 -57.09 16 2 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 3 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.30 -13.96 7.11 99.48 0.71 -13.26 16 6 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.23 -12.37 9.96 84.03 0.84 -11.53 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.73 -35.01 5.20 -318.12 -1.65 -36.67 16 10 C 0.18 6.62 3.06 46.00 0.14 6.76 16 11 H 0.06 2.04 7.13 -2.38 -0.02 2.03 16 12 C -0.14 -4.49 6.57 31.84 0.21 -4.28 16 13 C -0.10 -2.37 6.36 31.61 0.20 -2.16 16 14 C -0.09 -2.40 3.95 -9.19 -0.04 -2.43 16 15 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 16 C 0.11 2.65 6.60 86.53 0.57 3.23 16 17 N -0.60 -17.54 3.31 -809.91 -2.68 -20.23 16 18 C 0.59 18.23 7.89 86.83 0.69 18.91 16 19 O -0.56 -19.01 16.57 -3.82 -0.06 -19.07 16 20 C 0.10 2.73 6.73 41.96 0.28 3.01 16 21 C -0.12 -2.77 9.55 22.34 0.21 -2.56 16 22 C -0.03 -0.54 10.16 22.38 0.23 -0.32 16 23 C 0.02 0.37 7.25 39.69 0.29 0.66 16 24 N -0.52 -11.23 11.27 -191.66 -2.16 -13.39 16 25 C 0.31 4.52 12.96 180.04 2.33 6.85 16 26 N -0.58 -11.10 6.22 -195.70 -1.22 -12.32 16 27 H 0.44 7.18 8.96 -92.71 -0.83 6.35 16 28 C 0.21 5.42 8.46 134.06 1.13 6.55 16 29 N -0.46 -13.30 6.68 -181.83 -1.21 -14.51 16 30 C 0.11 3.38 6.01 86.52 0.52 3.90 16 31 C -0.10 -3.30 3.63 -9.19 -0.03 -3.34 16 32 H 0.07 2.39 7.83 -2.39 -0.02 2.37 16 33 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 34 H 0.37 19.44 7.63 -92.71 -0.71 18.74 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 37 H 0.08 1.69 7.18 -2.39 -0.02 1.68 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.08 2.03 7.85 -2.39 -0.02 2.01 16 40 H 0.09 1.96 7.20 -2.39 -0.02 1.94 16 41 H 0.17 3.32 7.62 -2.91 -0.02 3.30 16 42 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 43 H 0.28 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.07 2.13 7.20 -2.38 -0.02 2.11 16 45 H 0.10 3.47 5.26 -2.39 -0.01 3.46 16 Total: -1.00 -72.79 366.49 0.88 -71.91 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.48 Total: 35.22 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 8.04 Total: 19.78 kcal Atomic # 7 Polarization: -145.56 SS G_CDS: -8.64 Total: -154.20 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.79 0.88 -71.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026292767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.818 kcal (2) G-P(sol) polarization free energy of solvation -72.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds