Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00067 * 2 1 4 4 H 1.48502 * 109.47154 * 90.00422 * 3 2 1 5 5 H 1.48493 * 109.47344 * 329.99975 * 3 2 1 6 6 H 1.48508 * 109.47073 * 209.99805 * 3 2 1 7 7 C 1.38819 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00022 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.09004 * 110.46126 * 36.18996 * 10 9 7 12 12 C 1.55999 * 110.52821 * 273.55180 * 10 9 7 13 13 C 1.56336 * 105.76764 * 234.41546 * 12 10 9 14 14 C 1.51561 * 101.81317 * 334.55952 * 13 12 10 15 15 H 1.09003 * 111.12217 * 288.52588 * 14 13 12 16 16 C 1.51523 * 123.33757 * 152.74291 * 14 13 12 17 17 N 1.50374 * 102.14009 * 208.63472 * 16 14 13 18 18 C 1.34783 * 125.78260 * 205.32052 * 17 16 14 19 19 O 1.21624 * 119.99786 * 172.62691 * 18 17 16 20 20 C 1.47209 * 119.99960 * 352.62340 * 18 17 16 21 21 C 1.37753 * 119.93833 * 349.24482 * 20 18 17 22 22 C 1.39865 * 119.92484 * 179.73422 * 21 20 18 23 23 C 1.36300 * 119.82189 * 0.53593 * 22 21 20 24 24 C 1.40767 * 119.70789 * 359.73388 * 23 22 21 25 25 N 1.32822 * 132.74460 * 180.02562 * 24 23 22 26 26 C 1.32371 * 109.74455 * 179.97438 * 25 24 23 27 27 N 1.31389 * 109.61823 * 359.97438 * 26 25 24 28 28 N 1.36547 * 119.87765 * 359.97438 * 24 23 22 29 29 C 1.49285 * 108.14282 * 24.83436 * 17 16 14 30 30 C 1.49700 * 110.52469 * 158.97841 * 10 9 7 31 31 H 1.09004 * 108.54206 * 40.66203 * 30 10 9 32 32 H 0.96998 * 119.99836 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00528 * 0.02562 * 9 7 2 34 34 H 1.09002 * 110.19164 * 353.49015 * 12 10 9 35 35 H 1.09003 * 110.19036 * 115.25844 * 12 10 9 36 36 H 1.08999 * 110.96248 * 92.69278 * 13 12 10 37 37 H 1.09006 * 110.95847 * 216.39691 * 13 12 10 38 38 H 1.08992 * 110.80837 * 326.61704 * 16 14 13 39 39 H 1.09007 * 110.79806 * 90.11993 * 16 14 13 40 40 H 1.07999 * 120.03730 * 359.97438 * 21 20 18 41 41 H 1.08003 * 120.08626 * 180.25366 * 22 21 20 42 42 H 1.07998 * 120.14107 * 179.71020 * 23 22 21 43 43 H 1.07998 * 125.19019 * 180.02562 * 26 25 24 44 44 H 1.08999 * 110.39899 * 248.07214 * 29 17 16 45 45 H 1.09005 * 110.39388 * 125.67057 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 1.4001 5 1 1.4477 2.6526 -0.7000 6 1 3.5478 1.4401 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6569 -0.0017 11 1 2.9628 -3.5751 0.6007 12 6 2.4088 -4.0847 -1.4603 13 6 1.8403 -5.5315 -1.6269 14 6 1.8305 -6.0279 -0.1950 15 1 2.8432 -6.2123 0.1637 16 6 0.8701 -7.0836 0.3139 17 7 0.7353 -6.7152 1.7656 18 6 0.4040 -7.5569 2.7648 19 8 0.4550 -7.1795 3.9198 20 6 -0.0196 -8.9330 2.4580 21 6 -0.2911 -9.2948 1.1569 22 6 -0.6881 -10.6038 0.8650 23 6 -0.8155 -11.5139 1.8716 24 6 -0.5406 -11.1302 3.1978 25 7 -0.5777 -11.7862 4.3522 26 6 -0.2263 -10.9761 5.3383 27 7 0.0461 -9.7851 4.8551 28 7 -0.1480 -9.8507 3.4683 29 6 1.0436 -5.2614 1.9068 30 6 1.1875 -4.7659 0.5014 31 1 0.1870 -4.6357 0.0887 32 1 -0.4850 -0.8400 -0.0004 33 1 0.3555 -2.3881 -0.0005 34 1 1.9360 -3.4102 -2.1742 35 1 3.4895 -4.0851 -1.6026 36 1 0.8313 -5.5090 -2.0387 37 1 2.4988 -6.1402 -2.2467 38 1 -0.0915 -7.0093 -0.1940 39 1 1.2943 -8.0810 0.1980 40 1 -0.1937 -8.5696 0.3625 41 1 -0.8977 -10.8914 -0.1547 42 1 -1.1262 -12.5247 1.6527 43 1 -0.1710 -11.2524 6.3809 44 1 1.9747 -5.1220 2.4559 45 1 0.2246 -4.7465 2.4091 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026306425.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = 124.174235 kcal Electronic energy + Delta-G solvation = -29341.610846 eV Core-core repulsion = 25362.375851 eV Total energy + Delta-G solvation = -3979.234994 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.81571 -41.96581 -40.16035 -38.63708 -37.11431 -35.42779 -34.61340 -32.67146 -32.53098 -31.63407 -30.13761 -29.91956 -26.95552 -26.31601 -25.08464 -24.57135 -24.29188 -23.41977 -21.55040 -20.91740 -20.66111 -19.33850 -19.01241 -18.62171 -17.88521 -17.70990 -17.40957 -16.83035 -16.61213 -16.36330 -16.15435 -15.81747 -15.40767 -15.27089 -14.99516 -14.75608 -14.20886 -14.10415 -13.79286 -13.58470 -13.33674 -13.18988 -13.07110 -12.90804 -12.75828 -12.52732 -12.40314 -12.29355 -12.16714 -11.89459 -11.66940 -11.49673 -11.36253 -11.29200 -11.20847 -11.01537 -10.90576 -10.71062 -10.03167 -9.44338 -9.09598 -8.37776 -5.31448 -0.89549 -0.12701 0.77400 1.25036 1.48977 1.57494 1.67304 1.76699 1.81193 2.31585 2.69313 2.72877 2.90832 3.01439 3.29945 3.40954 3.52690 3.60901 3.81091 3.86814 3.92655 4.05462 4.10491 4.18939 4.23816 4.31527 4.38496 4.44716 4.53854 4.58870 4.69429 4.76675 4.79548 4.84978 4.87625 4.91982 5.06462 5.10911 5.21492 5.22646 5.27637 5.30283 5.48273 5.50338 5.51394 5.65843 6.11079 6.51334 6.71928 6.79416 7.11064 8.01611 8.11911 9.14420 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022073 B = 0.002415 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.200310 B =11591.072376 C =12416.648250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.106 4.106 3 Si 1.125 2.875 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.324 4.324 8 H 0.064 0.936 9 N -0.746 5.746 10 C 0.192 3.808 11 H 0.036 0.964 12 C -0.138 4.138 13 C -0.081 4.081 14 C -0.102 4.102 15 H 0.091 0.909 16 C 0.096 3.904 17 N -0.608 5.608 18 C 0.560 3.440 19 O -0.563 6.563 20 C 0.055 3.945 21 C -0.098 4.098 22 C -0.046 4.046 23 C -0.078 4.078 24 C 0.252 3.748 25 N -0.565 5.565 26 C 0.222 3.778 27 N -0.365 5.365 28 N -0.277 5.277 29 C 0.141 3.859 30 C -0.124 4.124 31 H 0.076 0.924 32 H 0.245 0.755 33 H 0.359 0.641 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.132 0.868 40 H 0.218 0.782 41 H 0.222 0.778 42 H 0.195 0.805 43 H 0.255 0.745 44 H 0.056 0.944 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -28.383 -6.750 29.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.297 4.297 3 Si 0.951 3.049 4 H -0.218 1.218 5 H -0.220 1.220 6 H -0.197 1.197 7 C -0.456 4.456 8 H 0.082 0.918 9 N -0.388 5.388 10 C 0.083 3.917 11 H 0.054 0.946 12 C -0.179 4.179 13 C -0.119 4.119 14 C -0.122 4.122 15 H 0.109 0.891 16 C -0.022 4.022 17 N -0.343 5.343 18 C 0.348 3.652 19 O -0.441 6.441 20 C -0.056 4.056 21 C -0.120 4.120 22 C -0.071 4.071 23 C -0.099 4.099 24 C -0.001 4.001 25 N -0.295 5.295 26 C -0.078 4.078 27 N -0.196 5.196 28 N -0.054 5.054 29 C 0.019 3.981 30 C -0.144 4.144 31 H 0.094 0.906 32 H 0.055 0.945 33 H 0.192 0.808 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.117 0.883 38 H 0.139 0.861 39 H 0.150 0.850 40 H 0.234 0.766 41 H 0.238 0.762 42 H 0.212 0.788 43 H 0.271 0.729 44 H 0.074 0.926 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.354 -26.348 -5.370 26.892 hybrid contribution -0.183 -0.782 1.097 1.359 sum 0.171 -27.130 -4.274 27.465 Atomic orbital electron populations 1.70965 1.07162 1.27927 1.56587 1.27064 0.97133 1.04519 1.00984 0.82642 0.73727 0.71954 0.76594 1.21768 1.21984 1.19659 1.20358 0.92181 0.87095 1.45943 0.91774 1.42705 1.04493 1.01743 1.89833 1.20165 0.93170 0.83333 0.94987 0.94552 1.23566 1.00493 0.97037 0.96765 1.21791 1.02721 0.93731 0.93688 1.22587 0.99563 0.92599 0.97430 0.89117 1.22881 1.01370 1.00298 0.77680 1.49773 1.67008 1.08812 1.08687 1.17642 0.78545 0.84590 0.84374 1.90902 1.54421 1.77490 1.21316 1.20161 1.08158 0.89385 0.87898 1.23224 0.95323 1.00854 0.92649 1.21958 0.92821 0.89642 1.02712 1.21188 0.99568 1.04324 0.84843 1.22783 0.98132 0.81323 0.97822 1.70794 1.29470 1.32467 0.96796 1.26921 0.93101 0.85715 1.02015 1.78943 1.31789 1.23615 0.85292 1.47658 1.41539 1.09978 1.06185 1.20800 1.00209 0.79408 0.97665 1.21831 1.01287 0.97291 0.94010 0.90586 0.94476 0.80821 0.93443 0.91908 0.89959 0.88268 0.86101 0.85047 0.76584 0.76176 0.78771 0.72920 0.92555 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.80 13.70 21.65 0.30 -60.50 16 2 C -0.11 -6.09 5.50 84.86 0.47 -5.62 16 3 Si 1.13 52.02 29.92 68.60 2.05 54.08 16 4 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 7 C -0.32 -17.79 9.97 84.04 0.84 -16.95 16 8 H 0.06 3.46 7.83 -2.91 -0.02 3.44 16 9 N -0.75 -35.74 5.12 -323.01 -1.65 -37.39 16 10 C 0.19 6.87 3.43 44.97 0.15 7.03 16 11 H 0.04 1.42 8.11 -2.38 -0.02 1.40 16 12 C -0.14 -3.92 6.74 32.79 0.22 -3.70 16 13 C -0.08 -1.32 6.62 31.28 0.21 -1.11 16 14 C -0.10 -1.72 3.10 -10.04 -0.03 -1.75 16 15 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 16 C 0.10 1.12 4.64 85.14 0.40 1.51 16 17 N -0.61 -14.53 3.44 -817.15 -2.81 -17.35 16 18 C 0.56 16.85 7.80 86.60 0.68 17.53 16 19 O -0.56 -23.47 16.41 -4.11 -0.07 -23.54 16 20 C 0.06 1.25 6.77 40.57 0.27 1.53 16 21 C -0.10 -0.89 8.29 22.55 0.19 -0.70 16 22 C -0.05 -0.14 10.04 22.21 0.22 0.09 16 23 C -0.08 -0.73 10.09 22.44 0.23 -0.51 16 24 C 0.25 5.53 7.88 134.16 1.06 6.58 16 25 N -0.56 -14.14 11.24 -198.18 -2.23 -16.37 16 26 C 0.22 5.69 12.98 180.83 2.35 8.04 16 27 N -0.37 -12.02 11.75 -61.38 -0.72 -12.74 16 28 N -0.28 -7.69 3.92 -181.81 -0.71 -8.40 16 29 C 0.14 4.28 6.83 84.78 0.58 4.86 16 30 C -0.12 -3.44 2.19 -11.19 -0.02 -3.46 16 31 H 0.08 2.14 7.77 -2.39 -0.02 2.12 16 32 H 0.24 15.06 6.77 -92.71 -0.63 14.43 16 33 H 0.36 18.08 6.46 -92.71 -0.60 17.48 16 34 H 0.05 1.62 7.98 -2.39 -0.02 1.60 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.12 0.71 7.32 -2.39 -0.02 0.69 16 39 H 0.13 0.58 6.25 -2.38 -0.01 0.57 16 40 H 0.22 0.49 3.41 -2.91 -0.01 0.48 16 41 H 0.22 -1.87 8.06 -2.91 -0.02 -1.89 16 42 H 0.20 0.52 8.06 -2.91 -0.02 0.49 16 43 H 0.26 4.16 8.06 -2.91 -0.02 4.13 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -93.35 364.62 2.53 -90.82 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.58 Total: 18.05 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 7.80 Total: 13.35 kcal Atomic # 7 Polarization: -144.92 SS G_CDS: -7.83 Total: -152.75 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.07 Total: -23.54 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.08 kcal Total: -93.35 2.53 -90.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026306425.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.991 kcal (2) G-P(sol) polarization free energy of solvation -93.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds