Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00193 * 2 1 4 4 H 1.48502 * 109.47098 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47448 * 300.00160 * 3 2 1 6 6 H 1.48504 * 109.47026 * 60.00587 * 3 2 1 7 7 C 1.38818 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99526 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00113 * 359.97438 * 7 2 1 10 10 C 1.46495 * 119.99622 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.41413 * 32.53316 * 10 9 7 12 12 C 1.54830 * 110.46032 * 269.92306 * 10 9 7 13 13 C 1.54839 * 102.73787 * 203.06041 * 12 10 9 14 14 C 1.54144 * 104.34611 * 38.22838 * 13 12 10 15 15 H 1.08997 * 111.89992 * 98.85304 * 14 13 12 16 16 C 1.54837 * 108.66719 * 224.14807 * 14 13 12 17 17 N 1.48342 * 104.12494 * 138.72078 * 16 14 13 18 18 C 1.34772 * 128.19878 * 138.24222 * 17 16 14 19 19 O 1.21619 * 120.00287 * 186.02175 * 18 17 16 20 20 C 1.47217 * 119.99567 * 6.29153 * 18 17 16 21 21 C 1.37743 * 119.93939 * 20.90042 * 20 18 17 22 22 C 1.39869 * 119.92852 * 179.84623 * 21 20 18 23 23 C 1.36300 * 119.81742 * 0.38841 * 22 21 20 24 24 C 1.40779 * 119.71196 * 359.82941 * 23 22 21 25 25 N 1.32812 * 132.74473 * 179.97438 * 24 23 22 26 26 C 1.32375 * 109.74474 * 180.02562 * 25 24 23 27 27 N 1.31391 * 109.61338 * 0.02562 * 26 25 24 28 28 N 1.36551 * 119.87327 * 359.97438 * 24 23 22 29 29 C 1.48343 * 103.60716 * 317.97351 * 17 16 14 30 30 C 1.54145 * 110.45360 * 155.00189 * 10 9 7 31 31 H 1.08998 * 111.90087 * 18.85929 * 30 10 9 32 32 H 0.96998 * 119.99935 * 359.97438 * 1 2 3 33 33 H 0.96996 * 120.00043 * 359.97438 * 9 7 2 34 34 H 1.08999 * 110.76073 * 321.36929 * 12 10 9 35 35 H 1.08998 * 110.75990 * 84.75139 * 12 10 9 36 36 H 1.08993 * 110.46029 * 156.94381 * 13 12 10 37 37 H 1.08997 * 110.45840 * 279.51493 * 13 12 10 38 38 H 1.08992 * 110.57814 * 20.05511 * 16 14 13 39 39 H 1.08997 * 110.52224 * 257.35017 * 16 14 13 40 40 H 1.07998 * 120.03700 * 0.02562 * 21 20 18 41 41 H 1.07992 * 120.08882 * 180.19819 * 22 21 20 42 42 H 1.08001 * 120.14675 * 179.79880 * 23 22 21 43 43 H 1.08001 * 125.19431 * 179.97438 * 26 25 24 44 44 H 1.08997 * 110.46887 * 160.70249 * 29 17 16 45 45 H 1.09001 * 110.46698 * 283.16089 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8916 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9943 -3.5557 0.5470 12 6 2.3258 -4.1258 -1.4527 13 6 2.5244 -5.6524 -1.2869 14 6 1.4933 -6.0576 -0.2151 15 1 0.5906 -6.4783 -0.6580 16 6 2.1745 -7.0186 0.7898 17 7 1.6711 -6.5752 2.1128 18 6 1.2705 -7.3368 3.1501 19 8 0.7793 -6.8157 4.1331 20 6 1.4329 -8.7989 3.0955 21 6 2.3487 -9.3571 2.2312 22 6 2.5051 -10.7462 2.1819 23 6 1.7443 -11.5428 2.9845 24 6 0.8085 -10.9604 3.8604 25 7 -0.0479 -11.4741 4.7359 26 6 -0.7218 -10.4999 5.3267 27 7 -0.3249 -9.3398 4.8546 28 7 0.6687 -9.6027 3.9014 29 6 1.7195 -5.0951 2.0265 30 6 1.1942 -4.7781 0.6088 31 1 0.1357 -4.5178 0.6158 32 1 -0.4850 0.8400 0.0004 33 1 0.3555 -2.3881 0.0002 34 1 1.4680 -3.9151 -2.0914 35 1 3.2278 -3.6597 -1.8491 36 1 2.3205 -6.1674 -2.2256 37 1 3.5359 -5.8699 -0.9438 38 1 3.2587 -6.9181 0.7412 39 1 1.8772 -8.0490 0.5947 40 1 2.9473 -8.7228 1.5943 41 1 3.2246 -11.1864 1.5075 42 1 1.8584 -12.6161 2.9485 43 1 -1.4823 -10.6377 6.0811 44 1 1.0728 -4.6479 2.7814 45 1 2.7432 -4.7397 2.1440 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026306427.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 126.613665 kcal Electronic energy + Delta-G solvation = -29348.884320 eV Core-core repulsion = 25369.755107 eV Total energy + Delta-G solvation = -3979.129213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.00805 -40.61027 -38.81160 -37.79555 -35.40222 -33.86451 -33.47079 -31.61840 -31.03759 -30.68791 -29.08293 -28.57579 -25.65651 -25.24624 -23.84121 -23.68779 -22.97647 -22.51736 -20.46852 -19.50950 -19.23615 -18.33303 -17.83170 -17.16908 -16.96692 -16.53378 -16.45277 -15.96792 -15.57906 -15.23521 -14.66862 -14.30910 -14.19826 -13.99751 -13.53004 -13.25764 -13.20631 -12.86293 -12.80699 -12.60364 -12.48057 -12.11864 -11.83924 -11.70973 -11.56097 -11.26167 -10.99991 -10.83709 -10.74108 -10.48973 -10.41167 -10.38326 -10.24783 -10.10056 -9.98667 -9.90065 -9.71425 -8.96138 -8.91250 -8.66352 -7.00358 -5.81262 -3.10512 -0.17642 0.54323 1.55290 2.12277 2.57866 2.69577 3.04575 3.40446 3.45935 3.48479 3.55908 3.75151 3.97760 4.22223 4.39472 4.46588 4.55422 4.58900 4.73558 4.77969 4.84520 5.09181 5.19497 5.20364 5.30465 5.43835 5.45773 5.52748 5.60795 5.62478 5.73009 5.79981 5.85283 5.90214 5.94971 6.02161 6.05794 6.13549 6.18297 6.26032 6.31964 6.46285 6.55482 6.72529 6.95740 7.26436 7.61427 7.66128 7.82884 8.36900 9.48311 10.05177 10.38702 11.41196 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020977 B = 0.002483 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.455056 B =11275.270411 C =12182.648550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.721 5.721 10 C 0.184 3.816 11 H 0.058 0.942 12 C -0.143 4.143 13 C -0.117 4.117 14 C -0.100 4.100 15 H 0.087 0.913 16 C 0.086 3.914 17 N -0.613 5.613 18 C 0.572 3.428 19 O -0.498 6.498 20 C 0.110 3.890 21 C -0.129 4.129 22 C -0.071 4.071 23 C -0.083 4.083 24 C 0.271 3.729 25 N -0.542 5.542 26 C 0.226 3.774 27 N -0.303 5.303 28 N -0.263 5.263 29 C 0.118 3.882 30 C -0.108 4.108 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.384 0.616 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.177 0.823 41 H 0.160 0.840 42 H 0.162 0.838 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -25.540 0.451 26.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.076 0.924 12 C -0.184 4.184 13 C -0.155 4.155 14 C -0.120 4.120 15 H 0.106 0.894 16 C -0.036 4.036 17 N -0.348 5.348 18 C 0.357 3.643 19 O -0.372 6.372 20 C -0.002 4.002 21 C -0.152 4.152 22 C -0.096 4.096 23 C -0.105 4.105 24 C 0.017 3.983 25 N -0.272 5.272 26 C -0.074 4.074 27 N -0.133 5.133 28 N -0.040 5.040 29 C -0.003 4.003 30 C -0.129 4.129 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.219 0.781 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.194 0.806 41 H 0.177 0.823 42 H 0.179 0.821 43 H 0.244 0.756 44 H 0.105 0.895 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 6.240 -24.811 1.602 25.634 hybrid contribution 0.141 0.891 -0.111 0.909 sum 6.381 -23.920 1.491 24.802 Atomic orbital electron populations 1.69665 1.05128 1.25642 1.57445 1.24753 0.95493 0.97749 1.02843 0.86145 0.78777 0.84207 0.77203 1.20550 1.21882 1.21865 1.19263 0.90981 0.84061 1.42920 0.91104 1.42460 1.05743 0.99714 1.88129 1.21139 0.93746 0.85211 0.92640 0.92402 1.23230 1.01603 0.92719 1.00803 1.22415 0.97601 0.97995 0.97500 1.22802 0.98836 0.95129 0.95212 0.89435 1.23329 0.99023 0.99418 0.81866 1.49005 1.63497 1.08770 1.13503 1.16995 0.79862 0.84243 0.83169 1.90942 1.41800 1.73072 1.31347 1.20180 0.94649 0.92028 0.93389 1.22088 0.98320 0.96733 0.98021 1.21237 0.98171 0.92419 0.97780 1.20513 0.93713 1.02019 0.94214 1.21930 0.97717 0.81159 0.97491 1.70818 1.11892 1.31512 1.12964 1.26360 0.98022 0.84861 0.98143 1.79051 1.05703 1.21797 1.06751 1.47661 1.24502 1.06622 1.25196 1.22754 1.02174 0.76830 0.98575 1.23112 1.01669 0.95176 0.92904 0.89071 0.93496 0.78149 0.91512 0.92084 0.92064 0.91629 0.89547 0.89649 0.80577 0.82275 0.82060 0.75591 0.89524 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.38 9.96 -15.06 -0.15 -6.53 16 8 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 9 N -0.72 -16.89 5.20 -51.92 -0.27 -17.16 16 10 C 0.18 3.20 3.06 -66.37 -0.20 3.00 16 11 H 0.06 1.02 7.13 -51.93 -0.37 0.65 16 12 C -0.14 -2.15 6.57 -24.80 -0.16 -2.32 16 13 C -0.12 -1.21 6.36 -25.16 -0.16 -1.37 16 14 C -0.10 -1.07 3.97 -87.94 -0.35 -1.42 16 15 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.09 0.73 4.61 -2.06 -0.01 0.72 16 17 N -0.61 -7.66 3.30 -170.00 -0.56 -8.22 16 18 C 0.57 8.47 7.77 -12.62 -0.10 8.37 16 19 O -0.50 -9.65 16.50 5.26 0.09 -9.57 16 20 C 0.11 1.32 6.69 -82.05 -0.55 0.77 16 21 C -0.13 -0.91 8.00 -39.15 -0.31 -1.22 16 22 C -0.07 -0.34 10.04 -39.67 -0.40 -0.74 16 23 C -0.08 -0.58 10.09 -39.32 -0.40 -0.97 16 24 C 0.27 3.15 7.88 -156.38 -1.23 1.92 16 25 N -0.54 -6.82 11.24 -13.99 -0.16 -6.97 16 26 C 0.23 2.76 12.98 -92.00 -1.19 1.57 16 27 N -0.30 -4.69 11.93 29.25 0.35 -4.34 16 28 N -0.26 -3.63 3.91 -8.81 -0.03 -3.67 16 29 C 0.12 1.69 6.59 -2.25 -0.01 1.68 16 30 C -0.11 -1.59 3.65 -88.14 -0.32 -1.91 16 31 H 0.09 1.52 7.79 -51.93 -0.40 1.12 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.38 9.77 7.60 -40.82 -0.31 9.46 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.57 7.18 -51.93 -0.37 0.20 16 38 H 0.09 0.55 7.02 -51.93 -0.36 0.19 16 39 H 0.09 0.53 5.55 -51.93 -0.29 0.24 16 40 H 0.18 0.80 4.72 -52.49 -0.25 0.55 16 41 H 0.16 0.11 8.06 -52.49 -0.42 -0.32 16 42 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 43 H 0.23 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.09 1.47 7.84 -51.93 -0.41 1.06 16 45 H 0.08 1.12 7.21 -51.93 -0.37 0.74 16 LS Contribution 364.65 15.07 5.50 5.50 Total: -1.00 -36.51 364.65 -10.68 -47.19 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.64 Total: 6.08 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -5.65 Total: 1.12 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: 0.05 Total: -67.24 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.51 -10.68 -47.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026306427.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.807 kcal (2) G-P(sol) polarization free energy of solvation -36.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds